Contig 007296:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006E22Sequence385007296 (4)ref|XP_010242658.1|2e-77PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Nelum764003945 (2)gb|ABZ04080.1|3e-90chloroplast heat shock protein 70-1 [Ipomoea nil]
JMFF033B12Sequence574007296 (4)gb|ABZ04080.1|5e-128chloroplast heat shock protein 70-1 [Ipomoea nil]708003945 (2)gb|ABZ04080.1|6e-76chloroplast heat shock protein 70-1 [Ipomoea nil]
JMFS071D02Sequence611007296 (4)gb|ABZ04081.1|8e-123chloroplast heat shock protein 70-2 [Ipomoea nil]
JMFS085A12Sequence610007296 (4)gb|ABZ04081.1|8e-123chloroplast heat shock protein 70-2 [Ipomoea nil]

Alignment

This contig is upended


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JMFS071D02+                                        TTTGTCATGACACCACCCAGAGTTTCCAAAC
JMFS085A12+                                         TTGTCATGACACCACCCAGAGTTTCCAAAC
                      ____________________________________________________________
consensus                                          TTTGTCATGACACCACCCAGAGTTTCCAAAC
 
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JMFS071D02+           CAATGGATAATGGAGTCACATCCAAGAGAACAATATCACTTACATCTCCAGACAAAACAC
JMFS085A12+           CAATGGATAATGGAGTCACATCCAAGAGAACAATATCACTTACATCTCCAGACAAAACAC
                      ____________________________________________________________
consensus             CAATGGATAATGGAGTCACATCCAAGAGAACAATATCACTTACATCTCCAGACAAAACAC
 
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JMFS071D02+           CAGCCTGAACTGCAGCCCCAAGTGCAACAACTTCATCAGGGTTAACAGTGACATTAGGGT
JMFS085A12+           CAGCCTGAACTGCAGCCCCAAGTGCAACAACTTCATCAGGGTTAACAGTGACATTAGGGT
                      ____________________________________________________________
consensus             CAGCCTGAACTGCAGCCCCAAGTGCAACAACTTCATCAGGGTTAACAGTGACATTAGGGT
 
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JMFS071D02+           CCTTTCCAGTCAGTTTCTTGACTAATTCCTGAACAGCAGGAATCCGAGTTGAGCCCCCAA
JMFS085A12+           CCTTTCCAGTCAGTTTCTTGACTAATTCCTGAACAGCAGGAATCCGAGTTGAGCCCCCAA
                      ____________________________________________________________
consensus             CCTTTCCAGTCAGTTTCTTGACTAATTCCTGAACAGCAGGAATCCGAGTTGAGCCCCCAA
 
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JMFS071D02+           CAAGGATCACTTCATCAATATCACTAAATGAGAGCTTTGCATCTCTCAAGGAATTTTGAA
JMFS085A12+           CAAGGATCACTTCATCAATATCACTAAATGAGAGCTTTGCATCTCTCAAGGAATTTTGAA
JMFF033B12+                                        GAGAGCTTTGCATCTCTCAATGAATTCTGGA
                      ____________________________________________________________
consensus             CAAGGATCACTTCATCAATATCACTAAATGAGAGCTTTGCATCTCTCAAGGAATTTTGAA
 
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JMFS071D02+           CTGGTGTTTTCAGCCTGTCAAGCAAGTCTGAGCACAGCTCCTCGAACTTAGCTCGAGTAA
JMFS085A12+           CTGGTGTTTTCAGCCTGTCAAGCAAGTCTGAGCACAGCTCCTCGAACTTAGCTCGAGTAA
JMFF033B12+           CGGGTGTTTTGAGTCTGTCAAGCAGATCTGAACACAATTCCTCAAACTTAGCTCGAGTTA
                      ____________________________________________________________
consensus             CTGGTGTTTTCAGCCTGTCAAGCAAGTCTGAGCACAGCTCCTCGAACTTAGCTCGAGTAA
 
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JMFS071D02+           TAGTGGTTTCAATATGCTTAGGACCATCTGATGTAGCAGTAATGAAGGGCAAGCTGATGT
JMFS085A12+           TAGTGGTTTCAATATGCTTAGGACCATCTGATGTAGCAGTAATGAAGGGCAAGCTGATGT
JMFF033B12+           GGGTTGTTTCAATATGTTTAGGACCATCAGCCGTGGCTGTAATGAAGGGCAAGCTAATGT
                      ____________________________________________________________
consensus             TAGTGGTTTCAATATGCTTAGGACCATCTGATGTAGCAGTAATGAAGGGCAAGCTGATGT
 
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JMFS071D02+           TAGTCTGTGTTAATGATGACAGCTCCATCTTAGCTTTCTCAGCTGTCTCAGTCAGACGCT
JMFS085A12+           TAGTCTGTGTTAATGATGACAGCTCCATCTTAGCTTTCTCAGCTGTCTCAGTCAGACGCT
JMFF033B12+           TAGTCTGCGTCAACGATGACAGCTCCATCTTAGCTTTCTCAGCTGTCTCAGTCAGACGCT
JMFF006E22+                                              TTCTCAGCTGTCTCAGTCAGACGCT
                      ____________________________________________________________
consensus             TAGTCTGTGTTAATGATGACAGCTCCATCTTAGCTTTCTCAGCTGTCTCAGTCAGACGCT
 
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JMFS071D02+           GAAGAGCTTGTTTGTCCTTGAGAAGATCTATGCCTTCATCCTTCTTGAAACTTGAAGCAA
JMFS085A12+           GAAGAGCTTGTTTGTCCTTGAGAAGATCTATGCCTTCATCCTTCTTGAAACTTGAAGCAA
JMFF033B12+           GAAGAGCTTGTTTGTCCTTGAGGAGATCTATGCCTTCATCCTTCTTGAAATTTGAAGCAA
JMFF006E22+           GAAGAGCTTGTTTGTCCTTGAGGAGATNTATGCCTTCATCCTTCTTGAAATTTGAAGCAA
                      ____________________________________________________________
consensus             GAAGAGCTTGTTTGTCCTTGAGGAGATCTATGCCTTCATCCTTCTTGAAATTTGAAGCAA
 
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JMFS071D02+           GCCAATCGACAATTCTCTTATCAAAATCATCACCACCAAGATGGGTATCTCCAGAAGTAG
JMFS085A12+           GCCAATCGACAATTCTCTTATCAAAATCATCACCACCAAGATGGGTATCTCCAGAAGTAG
JMFF033B12+           GCCAGTCAACAACTCTCTTATCAAAATCATCACCACCAAGATGGGTATCTCCAGAAGTAG
JMFF006E22+           GCCAGTCAACAACTCTNTTATCAAAATCATCACCACCAAGATGGGTATCTCCAGAAGTAG
                      ____________________________________________________________
consensus             GCCAGTCGACAATTCTCTTATCAAAATCATCACCACCAAGATGGGTATCTCCAGAAGTAG
 
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JMFS071D02+           ACAACACCTCAAATACACCATCACCAAC                                
JMFS085A12+           ACAACACCTCAAATACACCATCACCAAC                                
JMFF033B12+           ACAGCACCTCAAACACACCATCACCAACTTCTAGAACTGAAACATCAAAGGTTCCACCTC
JMFF006E22+           ACAGCACCTCAAACACACCATCACCAACTTNTAGAACTGAAACATCAAAGGTTCCACCTC
                      ____________________________________________________________
consensus             ACAGCACCTCAAATACACCATCACCAACTTCTAGAACTGAAACATCAAAGGTTCCACCTC
 
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JMFF033B12+           CAAGGTCAAACACCAAAATAGTTTCATTGTTTTTCCTTTCAAAACCATAAGCCAATGAAG
JMFF006E22+           CAAGGTCAAACACCAAAATAGTTTCATTGTTTTTCCTTTCAAAACCATAAGCCAATGAAG
                      ____________________________________________________________
consensus             CAAGGTCAAACACCAAAATAGTTTCATTGTTTTTCCTTTCAAAACCATAAGCCAATGAAG
 
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JMFF033B12+           CAGCAGTAGGTTCATTTATAATACGAAGCACCTCCAGTCCAGCAATACGGCCAGCATCCT
JMFF006E22+           CAGCAGTAGGTTCATTTATAATACGAAGCACCTCCAGTCCAGCAATACGGCCAGCATCCT
                      ____________________________________________________________
consensus             CAGCAGTAGGTTCATTTATAATACGAAGCACCTCCAGTCCAGCAATACGGCCAGCATCCT
 
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JMFF033B12+           TAGTTGCTGTTCTTTGAGAATCATTGAAGTATGCAGGAACTGTGACTACAGCTTTGGAAA
JMFF006E22+           TAGTTGCTGTTCTTTGAGAATCATTGAAGTATGCAGGAACTGTGACTACAGCTTTGGAAA
                      ____________________________________________________________
consensus             TAGTTGCTGTTCTTTGAGAATCATTGAAGTATGCAGGAACTGTGACTACAGCTTTGGAAA