Contig 007294:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005M06Sequence512007294 (3)emb|CDP01539.1|9e-32unnamed protein product [Coffea canephora]674020145ref|XP_003635057.1|9e-34PREDICTED: zinc-finger homeodomain protein 2-like [Vitis vinifera]
JMSF024O12Sequence659007294 (3)ref|XP_009596949.1|2e-51PREDICTED: zinc-finger homeodomain protein 2-like isoform X2 [Nicotiana tomento722007294 (3)ref|XP_006346746.1|2e-27PREDICTED: ZF-HD homeobox protein At4g24660-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF024O12-                  GCTAGGTTTCAACACTGGGTTAATGATGGAGAAAATTAAAGCATAAATCCCA
                      ____________________________________________________________
consensus                     GCTAGGTTTCAACACTGGGTTAATGATGGAGAAAATTAAAGCATAAATCCCA
 
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rJMSF024O12-          GCAGCAAGCTAAGGCCAGAGATAGACAATCTAAGCTAGCTACTTACAAAACATCTGGGCT
                      ____________________________________________________________
consensus             GCAGCAAGCTAAGGCCAGAGATAGACAATCTAAGCTAGCTACTTACAAAACATCTGGGCT
 
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rJMSF024O12-          AGCTAGCTTAACTAGATACTTAATTAGTACTCTTAATGGAAACTGAAATATAATGCATAC
                      ____________________________________________________________
consensus             AGCTAGCTTAACTAGATACTTAATTAGTACTCTTAATGGAAACTGAAATATAATGCATAC
 
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rJMSF024O12-          TACATAGGTAGATAGATTGATAGATATGGATCATATACGAGGAGGATCTTGGTCTGGTTG
                      ____________________________________________________________
consensus             TACATAGGTAGATAGATTGATAGATATGGATCATATACGAGGAGGATCTTGGTCTGGTTG
 
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rJMSF024O12-          GTTGGTGGTGTTGTTGTTGTTGTTTTGTTCTAGGGTTTTTTTAGCGACAGTGTGCTTGTT
                      ____________________________________________________________
consensus             GTTGGTGGTGTTGTTGTTGTTGTTTTGTTCTAGGGTTTTTTTAGCGACAGTGTGCTTGTT
 
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rJMSF024O12-          GTTATGCATCCAAACCTTGAACACGTGCCTTCTAACACCGTACTCGATGCAGAACTGCTC
                      ____________________________________________________________
consensus             GTTATGCATCCAAACCTTGAACACGTGCCTTCTAACACCGTACTCGATGCAGAACTGCTC
 
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rJMSF024O12-          CACAGCTTCCTCGCTCTCCTTCTGAATCCGCCACCCTAATCGCTCCGCCAGCTCCACCAT
JMSF024O12+                                    ATCCGCCACCNTAATCGCTCCGCCAGCTCCACCAT
                      ____________________________________________________________
consensus             CACAGCTTCCTCGCTCTCCTTCTGAATCCGCCACCCTAATCGCTCCGCCAGCTCCACCAT
 
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rJMSF024O12-          TTTCTCCTTCTGCACCTCTGTGAACTTTGTCCTGAACCGCTTCCCTTTCGACCCGCCGCC
JMSF024O12+           TTTCTCCTTCTGCACCTCTGTGAACTTTGTCCTGAACCGCTTCCCTTTCGACCCGCCGCC
                      ____________________________________________________________
consensus             TTTCTCCTTCTGCACCTCTGTGAACTTTGTCCTGAACCGCTTCCCTTTCGACCCGCCGCC
 
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rJMSF024O12-          GCCGCTGTTGGGAGTCGCGGTGTCCATGTCCAGGTCCAGTTCTTCCATCTCCTCCCGGTA
JMSF024O12+           GCCGCTGTTGGGAGTCGCGGTGTCCATGTCCAGGTCCAGTTCTTCCATCTCCTCCCGGTA
                      ____________________________________________________________
consensus             GCCGCTGTTGGGAGTCGCGGTGTCCATGTCCAGGTCCAGTTCTTCCATCTCCTCCCGGTA
 
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rJMSF024O12-          CGCGCTGCCGGAGATGGAGGGGAGGGCCAGGGGCCTCTGCAGCGGCGCGTGGTGGTGGTG
JMSF024O12+           CGCGCTGCCGGAGATGGAGGGGAGGGCCAGGGGCCTCTGCAGCGGCGCGTGGTGGTGGTG
                      ____________________________________________________________
consensus             CGCGCTGCCGGAGATGGAGGGGAGGGCCAGGGGCCTCTGCAGCGGCGCGTGGTGGTGGTG
 
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rJMSF024O12-          GTGGTGG                                                     
JMSF024O12+           GTGGTGGTGGTGGAGGTAGCCAGACGGAGCGCGGTGGTGGTGGTGGTAGCCGACGGGGAT
                      ____________________________________________________________
consensus             GTGGTGGTGGTGGAGGTAGCCAGACGGAGCGCGGTGGTGGTGGTGGTAGCCGACGGGGAT
 
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JMSF024O12+           AAGGGCGGCGGCGGTATTGATCTCCTTGCGGTGGAAATTTCGGTGGCAGTTGCAGGCGGC
JMFF005M06+                               TCTCCTTGCGGTGGAAATTGCGGTGGCAGTTACAGGCGGC
                      ____________________________________________________________
consensus             AAGGGCGGCGGCGGTATTGATCTCCTTGCGGTGGAAATTTCGGTGGCAGTTGCAGGCGGC
 
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JMSF024O12+           GCACTTGAGGGCGTCGAGGGTGCCGTATTCACCGGCGGGCATGAACTCCCCGCAGCCATC
JMFF005M06+           GCATTTGAGGGCGTCGACGCTGCCGTCCTCCCCGGCGGCCATGAACTCGCCGCAACCGTC
                      ____________________________________________________________
consensus             GCATTTGAGGGCGTCGAGGGTGCCGTCTTCCCCGGCGGGCATGAACTCGCCGCAGCCGTC
 
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JMSF024O12+           GACGGCGTGGCCGCCGATTCCCACCGCGTGATTCTTCTGGCACTCTCGGTAGCGCGGCTT
JMFF005M06+           CACCGCGTGCCCGCCGATCCCCACCGCGTGGTTCCTCAGGCACTCCCTGTACCGCGGCTT
                      ____________________________________________________________
consensus             GACGGCGTGGCCGCCGATTCCCACCGCGTGGTTCTTCTGGCACTCTCTGTAGCGCGGCTT
 
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JMSF024O12+           CCGCATCTG                                                   
JMFF005M06+           CCTCATCTGAAGTGGCGCCATCACTCCGCCGCCGCCGCCGGGGCTCATGGACGCCATTTT
                      ____________________________________________________________
consensus             CCTCATCTGAAGTGGCGCCATCACTCCGCCGCCGCCGCCGGGGCTCATGGACGCCATTTT
 
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JMFF005M06+           CGGCTGAGTTGGCTTCGAGTTCCCCAGCGAGTCATAACTCGCCCCCATCTCTATATCTCC
                      ____________________________________________________________
consensus             CGGCTGAGTTGGCTTCGAGTTCCCCAGCGAGTCATAACTCGCCCCCATCTCTATATCTCC
 
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JMFF005M06+           TTCTTCTCCCTTCTGCTCCTCTTGATCCTCAAACTCCATGCTTTCTTCTTCTCTTAGCTC
                      ____________________________________________________________
consensus             TTCTTCTCCCTTCTGCTCCTCTTGATCCTCAAACTCCATGCTTTCTTCTTCTCTTAGCTC
 
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JMFF005M06+           TTAGCTCTTCTTATACTTAGCCAAATCGTACGCTAATTTCCCCAACTAATTATCTTCCGT
                      ____________________________________________________________
consensus             TTAGCTCTTCTTATACTTAGCCAAATCGTACGCTAATTTCCCCAACTAATTATCTTCCGT