| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005A14 | Sequence | 409 | 007292 (12) | gb|ABP35526.1| | 3e-48 | CCR4-associated factor [Ipomoea batatas] | 729 | 007292 (12) | gb|ABP35526.1| | 2e-122 | CCR4-associated factor [Ipomoea batatas] |
| JMFF013F24 | Sequence | 548 | 007292 (12) | gb|ABP35526.1| | 1e-95 | CCR4-associated factor [Ipomoea batatas] | 667 | 007292 (12) | gb|ABP35526.1| | 4e-140 | CCR4-associated factor [Ipomoea batatas] |
| JMFF028P11 | Sequence | 494 | 007292 (12) | gb|ABP35526.1| | 1e-81 | CCR4-associated factor [Ipomoea batatas] | 375 | 007292 (12) | gb|ABP35526.1| | 2e-76 | CCR4-associated factor [Ipomoea batatas] |
| JMFF030M22 | Sequence | 512 | 007292 (12) | gb|ABP35526.1| | 3e-86 | CCR4-associated factor [Ipomoea batatas] | 710 | 007292 (12) | gb|ABP35526.1| | 2e-161 | CCR4-associated factor [Ipomoea batatas] |
| JMFF048C14 | Sequence | 292 | 007292 (12) | gb|ABP35526.1| | 4e-33 | CCR4-associated factor [Ipomoea batatas] | 251 | 007292 (12) | ref|XP_004291682.1| | 3e-35 | PREDICTED: probable CCR4-associated factor 1 homolog 11 [Fragaria vesca subsp. |
| JMFN006A18 | Sequence | 618 | 007292 (12) | gb|ABP35526.1| | 1e-117 | CCR4-associated factor [Ipomoea batatas] | |||||
| JMFN029M19 | Sequence | 638 | 007292 (12) | gb|ABP35526.1| | 3e-134 | CCR4-associated factor [Ipomoea batatas] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF048C14- GTTTAACTAAAAGAATTAATAAAATTATTATTTTTTGTTTA
JMFN029M19+ TTTTTGTTNA
rJMFF005A14- TTTTTGTTTA
____________________________________________________________
consensus GTTTAACTAAAAGAATTAATAAAATTATTATTTTTTGTTTA
. : . : . : . : . : . :
rJMFF048C14- ACAATTAGAATTATCTTAAAAAACTTCTAGTCCATACAATACTCCGGCATGTTTTTCCGG
JMFN029M19+ ACAATTAGAATTATCTTAAAAAACTTNTAGTCCATACAATACTCCGGCATGTTTTTCCGG
rJMFF005A14- ACAATTAGAATTATCTTAAAAAACTTCTAGTCCATACAATACTCCGGCATGTTTTTCCGG
rJMFF013F24- ATACTCCGGNATGTTTTTCCGG
rJMFF028P11- ACTTCTAGTCCATACAATACTCCGGCATGTTTTTCCGG
rJMFF030M22- AACTTCTAGTCCATACAATACTCCGGCATGTTTTTCCGG
____________________________________________________________
consensus ACAATTAGAATTATCTTAAAAAACTTCTAGTCCATACAATACTCCGGCATGTTTTTCCGG
. : . : . : . : . : . :
rJMFF048C14- TCCTTCATTTACAAAGTACACATCCCTCATTTTTTGAAACGTGTGCCATGTCAGCAGGCT
JMFN029M19+ TCCTTCATTTACAAAGTACACATCCCTCATTTTTNGAAACGTGTGCCATGTCAGCAGGCT
rJMFF005A14- TCCTTCATTTACAAAGTACACATCCCTCATTTTTTGAAACGTGTGCCATGTCAGCAGGCT
rJMFF013F24- TCCTTCATTTAC-AAGTACNCATCCCTCATTTTTTGAAACGTGTGCCATGTCAGCAGGCT
rJMFF028P11- TCCTTCATTTACAAAGTACACATCCCTCATTTTTTGAAACGTGTGCCATGTCAGCAGGCT
rJMFF030M22- TCCTTCATTTACAAAGTACACATCCCTCATTTTTTGAAACGTGTGCCATGTCAGCAGGCT
____________________________________________________________
consensus TCCTTCATTTACAAAGTACACATCCCTCATTTTTTGAAACGTGTGCCATGTCAGCAGGCT
. : . : . : . : . : . :
rJMFF048C14- ATCTGAACCGGCCTGATGGCATTTTCCGACCACCCGGTCCACGGCCAGCGTTCTGGCCAA
JMFN029M19+ ATCTGAACCGGCCTGATGGCATTTTCCGACCACCCGGTCCACGGCCAGCGTTCTGGCCAA
rJMFF005A14- ATCTGAACCGGCCTGATGGCATTTTCCGACCACCCGGTCCACGGCCAGCGTTCTGGCCAA
rJMFF013F24- ATCTGAACCGGCCTGATGGCATTTTCCGACCACCCGGTCCACGGCCAGCGTTCTGGCCAA
rJMFF028P11- ATCTGAACCGGCCTGATGGCATTTTCCGACCACCCGGTCCACGGCCAGCGTTCTGGCCAA
rJMFF030M22- ATCTGAACCGGCCTGATGGCATTTTCCGACCACCCGGTCCACGGCCAGCGTTCTGGCCAA
____________________________________________________________
consensus ATCTGAACCGGCCTGATGGCATTTTCCGACCACCCGGTCCACGGCCAGCGTTCTGGCCAA
. : . : . : . : . : . :
rJMFF048C14- CCGGTCTAGCCCGCCATAAAGACTCTGGCA
JMFN029M19+ CCGGTCTAGCCCGCCATAGAGACTCTGGCAGAACTTCATGAGGTGCTTGATGTCATAAAC
rJMFF005A14- CCGGTCTAGCCCGCCATAGAGACTCTGGCAGAACTTCATGAGGTGCTTGATGTCATAAAC
rJMFF013F24- CCGGTCTAGCCCGCCATANAGACTCTGGCAGAACTTCATGAGGTGCTTGATGTCATAAAC
rJMFF028P11- CCGGTCTAGCCCGCCATAGAGACTCTGGCAGAACTTCATGAGGTGCTTGATGTCATAAAC
rJMFF030M22- CCGGTCTAGCCCGCCATAGAGACTCTGGCAGAACTTCATGAGGTGCTTGATGTCATAAAC
____________________________________________________________
consensus CCGGTCTAGCCCGCCATAGAGACTCTGGCAGAACTTCATGAGGTGCTTGATGTCATAAAC
. : . : . : . : . : . :
JMFN029M19+ CCTATCCCCGAAGAAGATCTTGAGAATTTCCAAGAAATCTTCCAGATCTCCGGGCAAGGA
rJMFF005A14- CCTATCCCCGAAGAAGATCTTGAGAATTTCCAAGAAATCTTCCAGATCTCCGGGCAAGGA
rJMFF013F24- CCTATCCCCGAAGAAGATCTTGAGAATTTCCAAGAAATCTTCCAGATCTCCGGGCAAGGA
rJMFF028P11- CCTATCCCCGAAGAAGATCTTGAGAATTTCCAAGAAATCTTCCAGATCTCCGGGCAAGGA
rJMFF030M22- CCTATCCCCGAAGAAGATCTTGAGAATTTCCAAGAAATCTTCCAGATCTCCGGGCAAGGA
____________________________________________________________
consensus CCTATCCCCGAAGAAGATCTTGAGAATTTCCAAGAAATCTTCCAGATCTCCGGGCAAGGA
. : . : . : . : . : . :
JMFN029M19+ GCGGCGCGTGAGGATCTTGACCAGGTAGCCGAAATCGTACGCGCTGTGGAACGTGACCCA
rJMFF005A14- GCGGCGCGTGAGGATCTTGACCAGGTAGCCGAAATCGTACGCGCTGTGGAACGTGACCCA
rJMFF013F24- GCGGCGCGTGAGGATCTTGACCAGGTAGCCGAAATCGTACGCGCTGTGGAACGTGACCCA
rJMFF028P11- GCGGCGCGTGAGGATCTTGACCAGGTAGCCGAAATCNTACGCGCTGTGGAACNTGACCCA
rJMFF030M22- GCGGCGCGTGAGGATCTTGACCAGGTAGCCGAAATCGTACGCGCTGTGGAACGTGACCCA
JMFN006A18+ GCCGAAATCGTACGCGCTGTGGAACGTGACCCA
____________________________________________________________
consensus GCGGCGCGTGAGGATCTTGACCAGGTAGCCGAAATCGTACGCGCTGTGGAACGTGACCCA
. : . : . : . : . : . :
JMFN029M19+ GCTGACGGACTCGTTACAGACCAGGCCGGACGACATCATCAACTCGGCGAACCGGGCCGA
rJMFF005A14- GCTGACGGACTCGTTACAGACCAGGCCGGACGACATCATCAACTCGGCGAACCGGGCCGA
rJMFF013F24- GCTGACGGACTCGTTACAGACCAGGCCGGACGACATCATCAACTCGGCGAACCGGGCCGA
rJMFF028P11- GCTGACGGACTCGTTACAGACCNGGCCGGACGACATC
rJMFF030M22- GCTGACGGACTCGTTACAGACCAGGCCGGACGACATCATCAACTCGGCGAACCGGGCCGA
JMFN006A18+ GCTGACGGACTCGTTACAGACCAGGCCGGACGACATCATCAACTCGGCGAACCGGGCCGA
JMFF013F24+ CGAACCGGGCGGA
____________________________________________________________
consensus GCTGACGGACTCGTTACAGACCAGGCCGGACGACATCATCAACTCGGCGAACCGGGCCGA
. : . : . : . : . : . :
JMFN029M19+ GTCAACCCCGCAGTCCCGGTTCTTGTCGAAGTCGATTCCCTGACGGCGGAGCAACTCGAC
rJMFF005A14- GTCAACCCCGCAGTCCCGGTTCTTGTCGAAGTCGATTCCCTGACGGCGGAGCAACTCGAC
rJMFF013F24- GTCAACCCCGCAGTCCCGGTTCTTGTCGAAGTCGATTCCCTGACGGCGGAGCAACTCGAC
rJMFF030M22- GTCAACCCCGCAGTCCCGGTTCTTGTCGAAGTCGATTCCCTGACGGCGGAGCAACTCGAC
JMFN006A18+ GTCAACCCCGCAGTCCCGGTTCTTGTCGAAGTCGATTCCCTGACGGCGGAGCAACTCGAC
JMFF013F24+ GTCAACCCCGCAGTCCCGGTTCTTGTCGAAGTCGATTCCCTGACGGCGGAGCAACTCGAC
JMFF028P11+ GACGGCGGAGCAACTCGAC
JMFF030M22+ TGTCGAAGTCGATTCCCTGACGGCGGAGCAACTCGAC
____________________________________________________________
consensus GTCAACCCCGCAGTCCCGGTTCTTGTCGAAGTCGATTCCCTGACGGCGGAGCAACTCGAC
. : . : . : . : . : . :
JMFN029M19+ GGAATCCGGCGCGTAGAGGTCACGCTGCACGTCAAAGTCGGAGAAATTGAACTGCCAGAT
rJMFF005A14- GGAATCCGGCGCGTAGAGGTCACGCTGCACGTCAAAGTCGGAGAAATTGAACTGCCAGAT
rJMFF013F24- GGAATCCGGCGCGTAGAGGTCACGCTGCACGTCAAAGTCGGAGAAATTGAACTGCCAGAT
rJMFF030M22- GGAATCCGGCGCGTAGAGGTCACGCTGCACGTCAAAGTCGGAGAAATTGAACTGCCAGAT
JMFN006A18+ GGAATCCGGCGCGTAGAGGTCACGCTGCACGTCAAAGTCGGAGAAATTGAACTGCCAGAT
JMFF013F24+ GGAATCCGGCGCGTAGAGGTCACGCTGCACGTCAAAGTCGGAGAAATTGAACTGCCAGAT
JMFF028P11+ GGAATCCGGCGCGTAGAGGTCACGCTGCACGTCAAAGTCGGAGAAATTGAACTGCCAGAT
JMFF030M22+ GGAATCCGGCGCGTAGAGGTCACGCTGCACGTCAAAGTCGGAGAAATTGAACTGCCAGAT
____________________________________________________________
consensus GGAATCCGGCGCGTAGAGGTCACGCTGCACGTCAAAGTCGGAGAAATTGAACTGCCAGAT
. : . : . : . : . : . :
JMFN029M19+ GAAGCGGTGGCCGTCAGATCCGAG-CACGGGGAGGTTTCCGCTACCGTCCGACAAAGTCA
rJMFF005A14- GAAGCGGTGGCCGTCAGATCCGAGCCACGGGGAGGTTTCCGCTACCGTCCGACAAAGTCA
rJMFF013F24- GAAGCGGTGGCCGTCAGATCCGAG-CACGGGGAGGTTTCCGCTACCGTCCGACAAAGTCA
rJMFF030M22- GAAGCGGTGGCCGTCAGATCCGAG-CACGGGGAGGTTTCCGCTACCGTCCGACAAAGTCA
JMFN006A18+ GAAGCGGTGGCCGTCAGATCCGAG-CACGGGGAGGTTTCCGCTACCGTCCGACAAAGTCA
JMFF013F24+ GAAGCGGTGGCCGTCAGATCCGAG-CACGGGGAGGTTTCCGCTACCGTCCGACAAAGTCA
JMFF028P11+ GAAGCGGTGGCCGTCAGATCCGAG-CACGGGGAGGTTTCCGCTACCGTCCGACAAAGTCA
JMFF030M22+ GAAGCGGTGGCCGTCAGATCCGAG-CACGGGGAGGTTTCCGCTACCGTCCGACAAAGTCA
JMFF005A14+ CCGTCAGATCCGAG-CACGGGGAGGTTTCCGCTACCGTCCGACAAAGTCA
____________________________________________________________
consensus GAAGCGGTGGCCGTCAGATCCGAG-CACGGGGAGGTTTCCGCTACCGTCCGACAAAGTCA
. : . : . : . : . : . :
JMFN029M19+ ACCCCAA-CTGAATCAGATTCAG
rJMFF005A14- ACCCCAA-CTGAATCAGATTCAGAGCATCCACGTTTGACTTGAGCAACCGGTANGAATCC
rJMFF013F24- ACCCCAA-CTGAATCAGATTCAGAGCATCCACGTTTGACTTGAGCAACCGGTAGGAATCC
rJMFF030M22- ACCCCAA-CTGAATCAGATTCAGAGCATCCACGTTTGACTTGAGCAACCGGTAGGAATCC
JMFN006A18+ ACCCCAA-CTGAATCAGATTCAGAGCATCCACGTTTGACTTGAGCAACCGGTAGGAATCC
JMFF013F24+ ACCCCAA-CTGAATCAGATTCAGAGCATCCACGTTTGACTTGAGCAACCGGTAGGAATCC
JMFF028P11+ ACCCCAA-CTGAATCAGATTCAGAGCATCCACGTTTGACTTGAGCAACCGGTAGGAATCC
JMFF030M22+ ACCCCAA-CTGAATCAGATTCAGAGCATCCACGTTTGACTTGAGCAACCGGTAGGAATCC
JMFF005A14+ ACCCCAACCTGAATCAGATTCAGAGCATCCACGTTTGACTTGAGCAACCGGTAGGAATCC
____________________________________________________________
consensus ACCCCAA-CTGAATCAGATTCAGAGCATCCACGTTTGACTTGAGCAACCGGTAGGAATCC
. : . : . : . : . : . :
rJMFF005A14- GCAGAGCGATCGGAAGCCGAGAAAGGCCCTCGCCGGCGACTCTCCGGCTTGA
rJMFF013F24- GCAGAGCGATCGGAAGCCGAGAAAGGCCCTCGCCGGCGACTCTCCGG
rJMFF030M22- GCAGAGCGATCGGAAGCCGAGAAAGGNCCTCGCCGGCGACTCTCCGGCTTGAAAACNACC
JMFN006A18+ GCAGAGCGATCGGAAGCCGAGAAAGGCCCTCGCCGGCGACTCTCCGGCTTGAAAACAACC
JMFF013F24+ GCAGAGCGATCGGAAGCCGAGAAAGGCCCTCGCCGGCGACTCTCCGGCTTGAAAACAACC
JMFF028P11+ GCAGAGCGATCGGAAGCCGAGAAAGGCCCTCGCCGGCGACTCTCCGGCTTGAAAACAACC
JMFF030M22+ GCAGAGCGATCGGAAGCCGAGAAAGGCCCTCGCCGGCGACTCTCCGGCTTGAAAACAACC
JMFF048C14+ CGATCGGAAGCCGAGAAAGGCCCTCGCCGGCGACTCTCCGGCTTGAAAACAACC
JMFF005A14+ GCAGAGCGATCGGAAGCCGAGAAAGGCCCTCGCCGGCGACTCTCCGGCTTGAAAACAACC
____________________________________________________________
consensus GCAGAGCGATCGGAAGCCGAGAAAGGCCCTCGCCGGCGACTCTCCGGCTTGAAAACAACC
. : . : . : . : . : . :
rJMFF030M22- CCAGGAAACTCCG
JMFN006A18+ CCAGGAAACTCCGTATCCATGGAGATGTACGGATACTCGTCGATGAGGTGGCTGATGAGC
JMFF013F24+ CCAGGAAACTCCGTATCCATGGAGATGTACGGATACTCGTCGATGAGGTGGCTGATGAGC
JMFF028P11+ CCAGGAAACTCCGTATCCATGGAGATGTACGGATACTCGTCGATGAGGTGGCTGATGAGC
JMFF030M22+ CCAGGAAACTCCGTATCCATGGAGATGTACGGATACTCGTCGATGAGGTGGCTGATGAGC
JMFF048C14+ CCAGGAAACTCCGTATCCATGGAGATGTACGGATACTCGTCGATGAGGTGGCTGATGAGC
JMFF005A14+ CCAGGAAACTCCGTATCCATGGAGATGTACGGATACTCGTCGATGAGGTGGCTGATGAGC
____________________________________________________________
consensus CCAGGAAACTCCGTATCCATGGAGATGTACGGATACTCGTCGATGAGGTGGCTGATGAGC
. : . : . : . : . : . :
JMFN006A18+ TGGAACTCCGATTCCAGATTATCCGCCCAAACTTCCCGAATCTTAATGGGATTTGCGTCC
JMFF013F24+ TGGAACTCCGATTCCAGATTATCCGCCCAAACTTCCCGAATCTTAATGGGATTTGCGTCC
JMFF028P11+ TGGAACTCCGATTCCAGATTATCCGCCCAAACTTCCCGAATCTTAATGGGATTTGCGTCC
JMFF030M22+ TGGAACTCCGATTCCAGATTATCCGCCCAAACTTCCCGAATCTTAATGGGATTTGCGTCC
JMFF048C14+ TGGAACTCCGATTCCAGATTATCCGCCCAAACTTCCCGAATCTTAATGGGATTTGCGTCC
JMFF005A14+ TGGAACTCCGATTCCAGATTATCCGCCCAAACTTCCCGAATCTTAATGGGATTTGCGTCC
____________________________________________________________
consensus TGGAACTCCGATTCCAGATTATCCGCCCAAACTTCCCGAATCTTAATGGGATTTGCGTCC
. : . : . : . : . : . :
JMFN006A18+ AAAACATCTTCTTGTACCCCCATAACCTTAAACCTTAAAAAAACCAAACAAATAAAAACT
JMFF013F24+ AAAACATCTTCTTGTACCCCCATAACCTTAAACCTTAAAAAAACCAAACAAATAAAAACT
JMFF028P11+ AAAACATCTTCTTGTACCCCCATAACCTTAAACCTTAAAAAAACCAAACAAATAAAAACT
JMFF030M22+ AAAACATCTTCTTGTACCCCCATAACCTTAAACCTTAAAAAAACCAAACAAATAAAAACT
JMFF048C14+ AAAACATCTTCTTGTACCCCCATAACCTTAAACCTTAAAAAAACCAAACAAATAAAAACT
JMFF005A14+ AAAACATCTTCTTGTACCCCCATAACCTTAAACCTTAAAAAAACCAAACAAATAAAAACT
____________________________________________________________
consensus AAAACATCTTCTTGTACCCCCATAACCTTAAACCTTAAAAAAACCAAACAAATAAAAACT
. : . : . : . : . : . :
JMFN006A18+ GAAACTTGCAGAAACCCTTTAAAGCTATCAGATCAAAGAACACAGAT
JMFF013F24+ GAAACTTGCAGAAACCCTTTAAAGCTATCAGATCAAAGAACACAGATGAATATG
JMFF028P11+ GAAACTTGCAGAAACCCTTTAAAGCTATCAGATCAAAGAACACAGATGAATATGG
JMFF030M22+ GAAACTTGCAGAAACCCTTTAAAGCTATCAGATCAAAGAACACAGATGAATATGG
JMFF048C14+ GAAACTTGCAGAAACCCTTTAAAGCTATCGGATCAAAGAACACAGATGAATATGG
JMFF005A14+ GAAACTTGCAGAAACCCTTTAAAGCTATCAGATCAAAGAACACAGATGAATATGGATGAT
____________________________________________________________
consensus GAAACTTGCAGAAACCCTTTAAAGCTATCAGATCAAAGAACACAGATGAATATGGATGAT