Contig 007291:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005A07Sequence385007291 (2)ref|XP_002298205.2|9e-17hypothetical protein POPTR_0001s21210g [Populus trichocarpa] gb|EEE83010.2| hypo670007291 (2)ref|XP_009770214.1|1e-51PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X4 [

Alignment

This contig is upended


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rJMFF005A07- TTTTGTTCA
                      ____________________________________________________________
consensus TTTTGTTCA
 
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rJMFF005A07- ATACTTTCACATGAGAATACACGACACACATATCACAACACATGAAACATGTAGAAGAAA
                      ____________________________________________________________
consensus ATACTTTCACATGAGAATACACGACACACATATCACAACACATGAAACATGTAGAAGAAA
 
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rJMFF005A07- AAAATCGCTGCCAAATATCAACATACGCTTGCAAAACAAAGAGTTCACATTCGCGCCATG
                      ____________________________________________________________
consensus AAAATCGCTGCCAAATATCAACATACGCTTGCAAAACAAAGAGTTCACATTCGCGCCATG
 
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rJMFF005A07- CGCGTGAAAAACTAGTAGAATTCGACATTCTAGATAATGTAATATTGTTCTGAATATTTT
                      ____________________________________________________________
consensus CGCGTGAAAAACTAGTAGAATTCGACATTCTAGATAATGTAATATTGTTCTGAATATTTT
 
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rJMFF005A07- GGGAAAGTAGTTGCTGCCGGGCTTGAGATTGATTGGTTACCATAAGAACAGAAAGTTGCT
                      ____________________________________________________________
consensus GGGAAAGTAGTTGCTGCCGGGCTTGAGATTGATTGGTTACCATAAGAACAGAAAGTTGCT
 
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rJMFF005A07- GCACTTGGTTATTAGCTTGGGGTTGCATTGGATGTGAACCTGTTCCTTAGGGATTTTGAC
                      ____________________________________________________________
consensus GCACTTGGTTATTAGCTTGGGGTTGCATTGGATGTGAACCTGTTCCTTAGGGATTTTGAC
 
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rJMFF005A07- TGCTATTGGCAACATTAGCCTGCAGAGGATTAGCCATGGGATTTTGTGATTTTGTCTCCA
                      ____________________________________________________________
consensus TGCTATTGGCAACATTAGCCTGCAGAGGATTAGCCATGGGATTTTGTGATTTTGTCTCCA
 
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rJMFF005A07- TAGATAACATCTTCAAGGTTATCTTCCGCAAATAATCTGACTGATCTGTTGCAGCAGTAT
                      ____________________________________________________________
consensus TAGATAACATCTTCAAGGTTATCTTCCGCAAATAATCTGACTGATCTGTTGCAGCAGTAT
 
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rJMFF005A07- AAATTTTTTCCTCAAACCTCACTGCAATTTTCTTAAGTTCCTGTAGTCCCTCGACTCCAG
JMFF005A07+ AGTTCCTGTAGTCCCTCGACTCCAG
                      ____________________________________________________________
consensus AAATTTTTTCCTCAAACCTCACTGCAATTTTCTTAAGTTCCTGTAGTCCCTCGACTCCAG
 
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rJMFF005A07- AGAAGGGAAGATGTCTCTTTAAAGTCTCCATTATCTTGTGGACAACCCTCTGCCTGTGCT
JMFF005A07+ AGAAGGGAAGATGTCTCTTTAAAGTCTCCATTATCTTGTGGACAACCCTCTGCCTGTGCT
                      ____________________________________________________________
consensus AGAAGGGAAGATGTCTCTTTAAAGTCTCCATTATCTTGTGGACAACCCTCTGCCTGTGCT
 
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rJMFF005A07- CCGGTTGAAATTGAGTCCGCCAATCGCCCGTCTCCATAGCTCCGGGAGCCGGTGCCGCCG
JMFF005A07+ CCGGTTGAAATTGAGTCCGCCAATCGCCCGTCTCCATAGCTCCGGGAGCCGGTGCCGCCG
                      ____________________________________________________________
consensus CCGGTTGAAATTGAGTCCGCCAATCGCCCGTCTCCATAGCTCCGGGAGCCGGTGCCGCCG
 
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rJMFF005A07- CCGCAGCAATGGCGATGGGGTCACCACCCTGAGGCTCAGCCAGANGTTGCGCCGCCCTCC
JMFF005A07+ CCGCAGCAATGGCGATGGGGTCACCACCCTGAGGCTCAGCCAGAGGTTGCGCCGCCCTCC
                      ____________________________________________________________
consensus CCGCAGCAATGGCGATGGGGTCACCACCCTGAGGCTCAGCCAGAGGTTGCGCCGCCCTCC
 
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rJMFF005A07- A
JMFF005A07+ AATTATTCCCGTCCATGCTATATCAACTTCCTTCTACAGCTTCAATTACAGCTGAACTGA
                      ____________________________________________________________
consensus AATTATTCCCGTCCATGCTATATCAACTTCCTTCTACAGCTTCAATTACAGCTGAACTGA
 
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JMFF005A07+ ACTGAACTGAACTGATAAATGAAAGCGAAAATTCCCAGACTAGTGGTCAAAGAAACCGAC
                      ____________________________________________________________
consensus ACTGAACTGAACTGATAAATGAAAGCGAAAATTCCCAGACTAGTGGTCAAAGAAACCGAC
 
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JMFF005A07+ TCCAGAAATGGAGAAAGCTTTTTAAGAAAGATTTTTAGAGAGAGAACTGGAAAATTCAAC
                      ____________________________________________________________
consensus TCCAGAAATGGAGAAAGCTTTTTAAGAAAGATTTTTAGAGAGAGAACTGGAAAATTCAAC