Contig 007287:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004J08Sequence508007287 (2)ref|XP_009798541.1|1e-83PREDICTED: signal recognition particle receptor subunit alpha [Nicotiana sylves716013607 (2)ref|XP_009790358.1|2e-125PREDICTED: signal recognition particle receptor subunit alpha homolog [Nicotian
JMFS139A04Sequence626007287 (2)ref|XP_009614623.1|2e-102PREDICTED: signal recognition particle receptor subunit alpha-like [Nicotiana t

Alignment

This contig is upended


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JMFS139A04+                           TCCCATTCTCAAAACTACAATTAGAATTGCCATTTTCTAGTGAG
                      ____________________________________________________________
consensus                             TCCCATTCTCAAAACTACAATTAGAATTGCCATTTTCTAGTGAG
 
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JMFS139A04+           CGGTTTTTAACCTTGTCCTCTCCACCATCATCTCCTGATTCACTTTTTTTATTACCTCCA
                      ____________________________________________________________
consensus             CGGTTTTTAACCTTGTCCTCTCCACCATCATCTCCTGATTCACTTTTTTTATTACCTCCA
 
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JMFS139A04+           TCAAACATGCCCCTCTGAACTTGTCCTTGCTTCTTAGCAAGAGTATTCTTCATAGGCTTT
JMFF004J08+                                           CTTAGCAAGAGTATTCTTCATAGGCTTT
                      ____________________________________________________________
consensus             TCAAACATGCCCCTCTGAACTTGTCCTTGCTTCTTAGCAAGAGTATTCTTCATAGGCTTT
 
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JMFS139A04+           CCCGCCTGCTTTGATTTCTTCATTTCCTCAACACGTGCCTCTGCCTCCTTCCTAAGCTGT
JMFF004J08+           CCCGCCTGCTTTGATTTCTTCATTTCCTCAACACGTGCCTCTGCCTCCTTCCTAAGCTGT
                      ____________________________________________________________
consensus             CCCGCCTGCTTTGATTTCTTCATTTCCTCAACACGTGCCTCTGCCTCCTTCCTAAGCTGT
 
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JMFS139A04+           TGAAAAATATCATCGAAGTCATTGTACAGGGTCCTTTTGGGATCATATATCATTGAGAAC
JMFF004J08+           TGAAAAATATCATCGAAGTCATTGTACAGGGTCCTTTTGGGATCATATATCATTGAGAAC
                      ____________________________________________________________
consensus             TGAAAAATATCATCGAAGTCATTGTACAGGGTCCTTTTGGGATCATATATCATTGAGAAC
 
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JMFS139A04+           TCTTTCTTAACCATCATTAGTAGATCATCAACATACAAAAGATGGAGAATCCTCTGATAA
JMFF004J08+           TCTTTCTTAACCATCATTAGTAGATCATCAACATACAAAAGATGGAGAATCCTCTGATAA
                      ____________________________________________________________
consensus             TCTTTCTTAACCATCATTAGTAGATCATCAACATACAAAAGATGGAGAATCCTCTGATAA
 
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JMFS139A04+           ACAGCAACAAATACAATTCCAAGTTCATTGTGAAATGTCCACTTAAGAGTATAAGCAGCT
JMFF004J08+           ACAGCAACAAATACAATTCCAAGTTCATTGTGAAATGTCCACTTAAGAGTATAAGCAGCT
                      ____________________________________________________________
consensus             ACAGCAACAAATACAATTCCAAGTTCATTGTGAAATGTCCACTTAAGAGTATAAGCAGCT
 
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JMFS139A04+           CCTGGCACATCATAATTATAGGATGTAGAACCTGATCGTTCTTCCAAGAGACAAGACCGA
JMFF004J08+           CCTGGCACATCATAATTATAGGATGTAGAACCTGATCGTTCTTCCAAGAGACAAGACCGA
                      ____________________________________________________________
consensus             CCTGGCACATCATAATTATAGGATGTAGAACCTGATCGTTCTTCCAAGAGACAAGACCGA
 
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JMFS139A04+           ATCAAGATGTCAATCGGAGAACCTTTAAGAGCATTTCCAAGCTCTTTGCAGGTCCAGAGG
JMFF004J08+           ATCAAGATGTCAATCGGAGAACCTTTAAGAGCATTTCCAAGCTCTTTGCAGGTCCAGAGG
                      ____________________________________________________________
consensus             ATCAAGATGTCAATCGGAGAACCTTTAAGAGCATTTCCAAGCTCTTTGCAGGTCCAGAGG
 
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JMFS139A04+           ATCAACCCCCCTCTAGTGAAAATAAATAACTGCTCTAACATCTTTGGACAATGCAACCAA
JMFF004J08+           ATCAACCCCCCTCTAGTGAAAATAAATAACTGCTCTAACATCTTTGGACAATGCAACCAA
                      ____________________________________________________________
consensus             ATCAACCCCCCTCTAGTGAAAATAAATAACTGCTCTAACATCTTTGGACAATGCAACCAA
 
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JMFS139A04+           AAGTCTGAACTGGAATTTGAGGCCTAGGGTTCTCAGACGAAG                  
JMFF004J08+           AAGTCTGAACTGGAATTTGAGGCCTAGGGTTCTCAGACGAAGCGATCGCGGCGCATCTAT
                      ____________________________________________________________
consensus             AAGTCTGAACTGGAATTTGAGGCCTAGGGTTCTCAGACGAAGCGATCGCGGCGCATCTAT