Contig 007261:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP006A12Sequence323007261 (4)
JMCP009E10Sequence205007261 (4)
JMCP017D01Sequence337007261 (4)
JMCP017G03Sequence190007261 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMCP006A12+ ATATATATATATATATATAT
JMCP017D01+ CGGGAATTTATTTTATAATATATATATATATATATAT
                      ____________________________________________________________
consensus CGGGAATTTATTTTATAATATATATATATATATATAT
 
. : . : . : . : . : . :
rJMCP006A12+ AAAgtgTgtcCTGACACCTTTACTTCTATCTgagttCAtgtCTTTTCCTTTCTTCAGTCt
JMCP017D01+ AAACACTCAGCTGACACCTTTACTTCTATCTCTCAACAACACTTTTCCTTTCTTCAGTCA
                      ____________________________________________________________
consensus AAACACTCAGCTGACACCTTTACTTCTATCTCTCAACAACACTTTTCCTTTCTTCAGTCA
 
. : . : . : . : . : . :
rJMCP006A12+ gTGCGAGATTTTTCTCATTTTCTTTTTTTATTTTattTTCGTTGTTTTCgtcTTagTaga
rJMCP009E10+ GTTGTTTTCCAGTTTCTTCT
JMCP017D01+ CTGCGAGATTTTTCTCATTTTCTTTTTTTATTTTTAATTTGTTGTTTTCCAGTTTCTTCT
JMCP017G03+ AGTTTCTTCT
                      ____________________________________________________________
consensus CTGCGAGATTTTTCTCATTTTCTTTTTTTATTTTTAATTTGTTGTTTTCCAGTTTCTTCT
 
. : . : . : . : . : . :
rJMCP006A12+ gactttTTAGATTGTTTTTAAAGAATTTTTGTTTTAAagTTCAgtaTTgtgaCtagaaCT
rJMCP009E10+ CTGAAATTAGATTGTTTTTAAAGAATTTTTGTTTTAATCTTCACATTTCACTCATCTTCT
JMCP017D01+ CTGAAATTAGATTGTTTTTAAAGAATTTTTGTTTTAATCTTCACATTTCACTCATCTTCT
JMCP017G03+ CTGAAATTAGATTGTTTTTAAAGAATTTTTGTTTTAATCTTCACATTTCACTCATCTTCT
                      ____________________________________________________________
consensus CTGAAATTAGATTGTTTTTAAAGAATTTTTGTTTTAATCTTCACATTTCACTCATCTTCT
 
. : . : . : . : . : . :
rJMCP006A12+ CCGTTTTCTCCATGATTTgtcCaGATGTTTTGTcAATTcTgttacGATTaAgttctTTGg
rJMCP009E10+ CCGTTTTCTCCATGATTTCAGCTGATGTTTTGTGAATTGTCAATGGATTTACAAGATTGC
JMCP017D01+ CCGTTTTCTCCATGATTTCAGCTGATGTTTTGTGAATTGTCAATGGATTTACAAGATTGC
JMCP017G03+ CCGTTTTCTCCATGATTTCAGCTGATGTTTTGTGAATTGTCAATGGATTTACAAGATTGC
                      ____________________________________________________________
consensus CCGTTTTCTCCATGATTTCAGCTGATGTTTTGTGAATTGTCAATGGATTTACAAGATTGC
 
. : . : . : . : . : . :
rJMCP006A12+ tcCTCTTTTGTTGgtaATAAATCgtatttaTGAATTTAGGGTTTGAGTTGTTT
rJMCP009E10+ AGCTCTTCTGTTGCATATAAATCCATAAATTGAATTTAGGGTTTGAGTTGTTT
JMCP017D01+ AGCTCTTTTGTTGCATATAAATCCATAAATTGAATTTAGGGTTTGAGTTGTTT
JMCP017G03+ AGCTCTTTTGTTGCATATAAATCCATAAATTGAATTTAGGGTTTGAGTTGTTTATCTCCT
                      ____________________________________________________________
consensus AGCTCTTTTGTTGCATATAAATCCATAAATTGAATTTAGGGTTTGAGTTGTTTATCTCCT