Contig 007261:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP006A12Sequence323007261 (4)
JMCP009E10Sequence205007261 (4)
JMCP017D01Sequence337007261 (4)
JMCP017G03Sequence190007261 (4)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP006A12+                                                  ATATATATATATATATATAT
JMCP017D01+                                  CGGGAATTTATTTTATAATATATATATATATATATAT
                      ____________________________________________________________
consensus                                    CGGGAATTTATTTTATAATATATATATATATATATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP006A12+          AAAgtgTgtcCTGACACCTTTACTTCTATCTgagttCAtgtCTTTTCCTTTCTTCAGTCt
JMCP017D01+           AAACACTCAGCTGACACCTTTACTTCTATCTCTCAACAACACTTTTCCTTTCTTCAGTCA
                      ____________________________________________________________
consensus             AAACACTCAGCTGACACCTTTACTTCTATCTCTCAACAACACTTTTCCTTTCTTCAGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP006A12+          gTGCGAGATTTTTCTCATTTTCTTTTTTTATTTTattTTCGTTGTTTTCgtcTTagTaga
rJMCP009E10+                                                  GTTGTTTTCCAGTTTCTTCT
JMCP017D01+           CTGCGAGATTTTTCTCATTTTCTTTTTTTATTTTTAATTTGTTGTTTTCCAGTTTCTTCT
JMCP017G03+                                                             AGTTTCTTCT
                      ____________________________________________________________
consensus             CTGCGAGATTTTTCTCATTTTCTTTTTTTATTTTTAATTTGTTGTTTTCCAGTTTCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP006A12+          gactttTTAGATTGTTTTTAAAGAATTTTTGTTTTAAagTTCAgtaTTgtgaCtagaaCT
rJMCP009E10+          CTGAAATTAGATTGTTTTTAAAGAATTTTTGTTTTAATCTTCACATTTCACTCATCTTCT
JMCP017D01+           CTGAAATTAGATTGTTTTTAAAGAATTTTTGTTTTAATCTTCACATTTCACTCATCTTCT
JMCP017G03+           CTGAAATTAGATTGTTTTTAAAGAATTTTTGTTTTAATCTTCACATTTCACTCATCTTCT
                      ____________________________________________________________
consensus             CTGAAATTAGATTGTTTTTAAAGAATTTTTGTTTTAATCTTCACATTTCACTCATCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP006A12+          CCGTTTTCTCCATGATTTgtcCaGATGTTTTGTcAATTcTgttacGATTaAgttctTTGg
rJMCP009E10+          CCGTTTTCTCCATGATTTCAGCTGATGTTTTGTGAATTGTCAATGGATTTACAAGATTGC
JMCP017D01+           CCGTTTTCTCCATGATTTCAGCTGATGTTTTGTGAATTGTCAATGGATTTACAAGATTGC
JMCP017G03+           CCGTTTTCTCCATGATTTCAGCTGATGTTTTGTGAATTGTCAATGGATTTACAAGATTGC
                      ____________________________________________________________
consensus             CCGTTTTCTCCATGATTTCAGCTGATGTTTTGTGAATTGTCAATGGATTTACAAGATTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP006A12+          tcCTCTTTTGTTGgtaATAAATCgtatttaTGAATTTAGGGTTTGAGTTGTTT       
rJMCP009E10+          AGCTCTTCTGTTGCATATAAATCCATAAATTGAATTTAGGGTTTGAGTTGTTT       
JMCP017D01+           AGCTCTTTTGTTGCATATAAATCCATAAATTGAATTTAGGGTTTGAGTTGTTT       
JMCP017G03+           AGCTCTTTTGTTGCATATAAATCCATAAATTGAATTTAGGGTTTGAGTTGTTTATCTCCT
                      ____________________________________________________________
consensus             AGCTCTTTTGTTGCATATAAATCCATAAATTGAATTTAGGGTTTGAGTTGTTTATCTCCT