Contig 007257:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029L04Sequence631013554 (3)ref|XP_006353762.1|1e-99PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Solanum tuberosum]726007257 (3)ref|XP_004243912.1|6e-54PREDICTED: microtubule-associated protein TORTIFOLIA1 [Solanum lycopersicum] re
JMSF049B18Sequence709013554 (3)ref|XP_006353762.1|4e-99PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Solanum tuberosum]780007257 (3)ref|XP_004243912.1|2e-54PREDICTED: microtubule-associated protein TORTIFOLIA1 [Solanum lycopersicum] re
JMSF052K09Sequence667013554 (3)ref|XP_006353762.1|1e-98PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Solanum tuberosum]832007257 (3)ref|XP_009618427.1|5e-58PREDICTED: microtubule-associated protein TORTIFOLIA1 [Nicotiana tomentosiformi

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049B18+                                                           CTGCACAGGGA
rJMSF052K09+                 ACCAAATAAAAAATTCTCTTGGGAAGATCACTCAGCGAGGCTCTGCACAGGGA
                      ____________________________________________________________
consensus                    ACCAAATAAAAAATTCTCTTGGGAAGATCACTCAGCGAGGCTCTGCACAGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+                                                   CCAGAGTTTCTACTAGTAA
rJMSF049B18+          GGCAATGGTCGTCAAACAAGAAAAACTGATAACCCCTTTTCCCAGAGTTTCTACTAGTAA
rJMSF052K09+          GGCAATGGTCGTCAAACAAGAAAAACTGATAACCCC-TTTCCCAGAGTTTCTACTAGTAA
                      ____________________________________________________________
consensus             GGCAATGGTCGTCAAACAAGAAAAACTGATAACCCCTTTTCCCAGAGTTTCTACTAGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          TGTCAAGCAAAATATCTTAGAGATTGAGAGTAGTTCGTGGAAAGTTGTTAAATGTCATAT
rJMSF049B18+          TGTCAAGCAAAATATCTTAGAGATTGAGAGTAGTTCGTGGAAAGTTGTTAAATGTCATAT
rJMSF052K09+          TGTCAAGCAAAATATCTTAGAGATTGAGAGTAGTTCGTGGAAAGTTGTTAAATGTCATAT
                      ____________________________________________________________
consensus             TGTCAAGCAAAATATCTTAGAGATTGAGAGTAGTTCGTGGAAAGTTGTTAAATGTCATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          GCTGAATGGGGATCTAGATTCTGCATATATGGAGGCCCTGTGCTCAGGTAGTGAACTTGT
rJMSF049B18+          GCTGAATGGGGATCTAGATTCTGCATATATGGAGGCCCTGTGCTCAGGTAGTGAACTTGT
rJMSF052K09+          GCTGAATGGGGATCTAGATTCTGCATATATGGAGGCCCTGTGCTCAGGTAGTGAACTTGT
                      ____________________________________________________________
consensus             GCTGAATGGGGATCTAGATTCTGCATATATGGAGGCCCTGTGCTCAGGTAGTGAACTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          TTTGTTTCATCTGCTTGACAGAACAGGTCCTGTTCTGGACAACTTATCACAAAAGACTTC
rJMSF049B18+          TTTGTTTCATCTGCTTGACAGAACAGGTCCTGTTCTGGACAACTTATCACAAAAGACTTC
rJMSF052K09+          TTTGTTTCATCTGCTTGACAGAACAGGTCCTGTTCTGGACAACTTATCACAAAAGACTTC
                      ____________________________________________________________
consensus             TTTGTTTCATCTGCTTGACAGAACAGGTCCTGTTCTGGACAACTTATCACAAAAGACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          TAGTGATCTTTTGACAATTCTTGCATCATACTTCTTGGAACAAAGATTTGTGAATTCCAT
rJMSF049B18+          TAGTGATCTTTTGACAATTCTTGCATCATACTTCTTGGAACAAAGATTTGTGAATTCCAT
rJMSF052K09+          TAGTGATCTTTTGACAATTCTTGCATCATACTTCTTGGAACAAAGATTTGTGAATTCCAT
                      ____________________________________________________________
consensus             TAGTGATCTTTTGACAATTCTTGCATCATACTTCTTGGAACAAAGATTTGTGAATTCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          TCTCCCTTGGTTACAACAGTTGGCTGAACTGTGCACCACCCACGGCCCAGAATACATCAC
rJMSF049B18+          TCTCCCTTGGTTACAACAGTTGGCTGAACTGTGCACCACCCACGGCCCAGAATACATCAC
rJMSF052K09+          TCTCCCTTGGTTACAACAGTTGGCTGAACTGTGCACCACCCACGGCCCAGAATACATCAC
                      ____________________________________________________________
consensus             TCTCCCTTGGTTACAACAGTTGGCTGAACTGTGCACCACCCACGGCCCAGAATACATCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          TCTTTCTGCAAAAACAAGGCGGGAGTTCTTCTCTGGATTTCAAGTAGTTAATATGGAATT
rJMSF049B18+          TCTTTCTGCAAAAACAAGGCGGGAGTTCTTCTCTGGATTTCAAGTAGTTAATATGGAATT
rJMSF052K09+          TCTTTCTGCAAAAACAAGGCGGGAGTTCTTCTCTGGATTTCAAGTAGTTAATATGGAATT
                      ____________________________________________________________
consensus             TCTTTCTGCAAAAACAAGGCGGGAGTTCTTCTCTGGATTTCAAGTAGTTAATATGGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          TTCTAGTGTTGCAGAAAGAAAATCTTTCATGCAGCTGGCATCAACCTTGCGCCAGACTTG
rJMSF049B18+          TTCTAGTGTTGCAGAAAGAAAATCTTTCATGCAGCTGGCATCAACCTTGCGCCAGACTTG
rJMSF052K09+          TTCTAGTGTTGCAGAAAGAAAATCTTTCATGCAGCTGGCATCAACCTTGCGCCAGACTTG
                      ____________________________________________________________
consensus             TTCTAGTGTTGCAGAAAGAAAATCTTTCATGCAGCTGGCATCAACCTTGCGCCAGACTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          GGAAAAGTGTTCTGCGTGACAAGATGAAAGCAGTGTGGATGCTCTCTGGCATTCGGCGAA
rJMSF049B18+          GGAAAAGTGTTCTGCGTGACAAGATGAAAGCAGTGTGGATGCTCTCTGGCATTCGGCGAA
rJMSF052K09+          GGAAAAGTGTCCTGCGTGACAAGATGAAAGCAGTGTGGATGCTCTCTGGCATTCGGCGAA
                      ____________________________________________________________
consensus             GGAAAAGTGTTCTGCGTGACAAGATGAAAGCAGTGTGGATGCTCTCTGGCATTCGGCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          ATCTGTTGTGTTCTCAGAGACTCAGAGTGGACTTATGCTATCTGGAAATAAATTTCATAA
rJMSF049B18+          ATCTGTTGTGTTCTCAGAGACTCAGAGTGGACTTATGCTATCTGGAAATAAATTTCATAA
rJMSF052K09+          ATCTGTTGTGTTCTCAGAGACTCAGAGTGGACTTATGCTATCTGGAAATAAATTTCATAA
                      ____________________________________________________________
consensus             ATCTGTTGTGTTCTCAGAGACTCAGAGTGGACTTATGCTATCTGGAAATAAATTTCATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          TCTACGTTTATGTTATCTGAGTCTGGCATTCATAATAGTCAGTATTTAGTAGATTCTTCA
rJMSF049B18+          TCTACGTTTATGTTATCTGAGTCTGGCATTCATAATAGTCAGTATTTAGTAGATTCTTCA
rJMSF052K09+          TCTACGTTTATGTTATCTGAGTCTGGCATTCATAATAGTCAGTATTTAGTAGATTCTTCA
                      ____________________________________________________________
consensus             TCTACGTTTATGTTATCTGAGTCTGGCATTCATAATAGTCAGTATTTAGTAGATTCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          ATTACCTTGTGTTGACCTGTCTTTTCTCTGTTTGTAATGGCACATACATCTTTTGTTAGA
rJMSF049B18+          ATTACCTTGTGTTGACCTGTCTTTTCTCTGTTTGTAATGGCACATACATCTTTTGTTAGA
rJMSF052K09+          ATTACCTTGTGTTGACCTGTCTTTTCTCTGTTTGTAATGGCACATACATCTTTTGTTAGA
                      ____________________________________________________________
consensus             ATTACCTTGTGTTGACCTGTCTTTTCTCTGTTTGTAATGGCACATACATCTTTTGTTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L04+          AGCTGCAGCCATCAAGATCTATTGAGTATTGAATATTGATATCCCCT             
rJMSF049B18+          AGCTGCAGCCATCAAGATCTATTGAGTATTGAATATTGATATCCCCT             
rJMSF052K09+          AGCTGCAGCCATCAAGATCTATTGAGTATTGAATATTGATATCCCCTCCTTGTGCACAAT
                      ____________________________________________________________
consensus             AGCTGCAGCCATCAAGATCTATTGAGTATTGAATATTGATATCCCCTCCTTGTGCACAAT