Contig 007257:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029L04Sequence631013554 (3)ref|XP_006353762.1|1e-99PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Solanum tuberosum]726007257 (3)ref|XP_004243912.1|6e-54PREDICTED: microtubule-associated protein TORTIFOLIA1 [Solanum lycopersicum] re
JMSF049B18Sequence709013554 (3)ref|XP_006353762.1|4e-99PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Solanum tuberosum]780007257 (3)ref|XP_004243912.1|2e-54PREDICTED: microtubule-associated protein TORTIFOLIA1 [Solanum lycopersicum] re
JMSF052K09Sequence667013554 (3)ref|XP_006353762.1|1e-98PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Solanum tuberosum]832007257 (3)ref|XP_009618427.1|5e-58PREDICTED: microtubule-associated protein TORTIFOLIA1 [Nicotiana tomentosiformi

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF049B18+ CTGCACAGGGA
rJMSF052K09+ ACCAAATAAAAAATTCTCTTGGGAAGATCACTCAGCGAGGCTCTGCACAGGGA
                      ____________________________________________________________
consensus ACCAAATAAAAAATTCTCTTGGGAAGATCACTCAGCGAGGCTCTGCACAGGGA
 
. : . : . : . : . : . :
rJMSF029L04+ CCAGAGTTTCTACTAGTAA
rJMSF049B18+ GGCAATGGTCGTCAAACAAGAAAAACTGATAACCCCTTTTCCCAGAGTTTCTACTAGTAA
rJMSF052K09+ GGCAATGGTCGTCAAACAAGAAAAACTGATAACCCC-TTTCCCAGAGTTTCTACTAGTAA
                      ____________________________________________________________
consensus GGCAATGGTCGTCAAACAAGAAAAACTGATAACCCCTTTTCCCAGAGTTTCTACTAGTAA
 
. : . : . : . : . : . :
rJMSF029L04+ TGTCAAGCAAAATATCTTAGAGATTGAGAGTAGTTCGTGGAAAGTTGTTAAATGTCATAT
rJMSF049B18+ TGTCAAGCAAAATATCTTAGAGATTGAGAGTAGTTCGTGGAAAGTTGTTAAATGTCATAT
rJMSF052K09+ TGTCAAGCAAAATATCTTAGAGATTGAGAGTAGTTCGTGGAAAGTTGTTAAATGTCATAT
                      ____________________________________________________________
consensus TGTCAAGCAAAATATCTTAGAGATTGAGAGTAGTTCGTGGAAAGTTGTTAAATGTCATAT
 
. : . : . : . : . : . :
rJMSF029L04+ GCTGAATGGGGATCTAGATTCTGCATATATGGAGGCCCTGTGCTCAGGTAGTGAACTTGT
rJMSF049B18+ GCTGAATGGGGATCTAGATTCTGCATATATGGAGGCCCTGTGCTCAGGTAGTGAACTTGT
rJMSF052K09+ GCTGAATGGGGATCTAGATTCTGCATATATGGAGGCCCTGTGCTCAGGTAGTGAACTTGT
                      ____________________________________________________________
consensus GCTGAATGGGGATCTAGATTCTGCATATATGGAGGCCCTGTGCTCAGGTAGTGAACTTGT
 
. : . : . : . : . : . :
rJMSF029L04+ TTTGTTTCATCTGCTTGACAGAACAGGTCCTGTTCTGGACAACTTATCACAAAAGACTTC
rJMSF049B18+ TTTGTTTCATCTGCTTGACAGAACAGGTCCTGTTCTGGACAACTTATCACAAAAGACTTC
rJMSF052K09+ TTTGTTTCATCTGCTTGACAGAACAGGTCCTGTTCTGGACAACTTATCACAAAAGACTTC
                      ____________________________________________________________
consensus TTTGTTTCATCTGCTTGACAGAACAGGTCCTGTTCTGGACAACTTATCACAAAAGACTTC
 
. : . : . : . : . : . :
rJMSF029L04+ TAGTGATCTTTTGACAATTCTTGCATCATACTTCTTGGAACAAAGATTTGTGAATTCCAT
rJMSF049B18+ TAGTGATCTTTTGACAATTCTTGCATCATACTTCTTGGAACAAAGATTTGTGAATTCCAT
rJMSF052K09+ TAGTGATCTTTTGACAATTCTTGCATCATACTTCTTGGAACAAAGATTTGTGAATTCCAT
                      ____________________________________________________________
consensus TAGTGATCTTTTGACAATTCTTGCATCATACTTCTTGGAACAAAGATTTGTGAATTCCAT
 
. : . : . : . : . : . :
rJMSF029L04+ TCTCCCTTGGTTACAACAGTTGGCTGAACTGTGCACCACCCACGGCCCAGAATACATCAC
rJMSF049B18+ TCTCCCTTGGTTACAACAGTTGGCTGAACTGTGCACCACCCACGGCCCAGAATACATCAC
rJMSF052K09+ TCTCCCTTGGTTACAACAGTTGGCTGAACTGTGCACCACCCACGGCCCAGAATACATCAC
                      ____________________________________________________________
consensus TCTCCCTTGGTTACAACAGTTGGCTGAACTGTGCACCACCCACGGCCCAGAATACATCAC
 
. : . : . : . : . : . :
rJMSF029L04+ TCTTTCTGCAAAAACAAGGCGGGAGTTCTTCTCTGGATTTCAAGTAGTTAATATGGAATT
rJMSF049B18+ TCTTTCTGCAAAAACAAGGCGGGAGTTCTTCTCTGGATTTCAAGTAGTTAATATGGAATT
rJMSF052K09+ TCTTTCTGCAAAAACAAGGCGGGAGTTCTTCTCTGGATTTCAAGTAGTTAATATGGAATT
                      ____________________________________________________________
consensus TCTTTCTGCAAAAACAAGGCGGGAGTTCTTCTCTGGATTTCAAGTAGTTAATATGGAATT
 
. : . : . : . : . : . :
rJMSF029L04+ TTCTAGTGTTGCAGAAAGAAAATCTTTCATGCAGCTGGCATCAACCTTGCGCCAGACTTG
rJMSF049B18+ TTCTAGTGTTGCAGAAAGAAAATCTTTCATGCAGCTGGCATCAACCTTGCGCCAGACTTG
rJMSF052K09+ TTCTAGTGTTGCAGAAAGAAAATCTTTCATGCAGCTGGCATCAACCTTGCGCCAGACTTG
                      ____________________________________________________________
consensus TTCTAGTGTTGCAGAAAGAAAATCTTTCATGCAGCTGGCATCAACCTTGCGCCAGACTTG
 
. : . : . : . : . : . :
rJMSF029L04+ GGAAAAGTGTTCTGCGTGACAAGATGAAAGCAGTGTGGATGCTCTCTGGCATTCGGCGAA
rJMSF049B18+ GGAAAAGTGTTCTGCGTGACAAGATGAAAGCAGTGTGGATGCTCTCTGGCATTCGGCGAA
rJMSF052K09+ GGAAAAGTGTCCTGCGTGACAAGATGAAAGCAGTGTGGATGCTCTCTGGCATTCGGCGAA
                      ____________________________________________________________
consensus GGAAAAGTGTTCTGCGTGACAAGATGAAAGCAGTGTGGATGCTCTCTGGCATTCGGCGAA
 
. : . : . : . : . : . :
rJMSF029L04+ ATCTGTTGTGTTCTCAGAGACTCAGAGTGGACTTATGCTATCTGGAAATAAATTTCATAA
rJMSF049B18+ ATCTGTTGTGTTCTCAGAGACTCAGAGTGGACTTATGCTATCTGGAAATAAATTTCATAA
rJMSF052K09+ ATCTGTTGTGTTCTCAGAGACTCAGAGTGGACTTATGCTATCTGGAAATAAATTTCATAA
                      ____________________________________________________________
consensus ATCTGTTGTGTTCTCAGAGACTCAGAGTGGACTTATGCTATCTGGAAATAAATTTCATAA
 
. : . : . : . : . : . :
rJMSF029L04+ TCTACGTTTATGTTATCTGAGTCTGGCATTCATAATAGTCAGTATTTAGTAGATTCTTCA
rJMSF049B18+ TCTACGTTTATGTTATCTGAGTCTGGCATTCATAATAGTCAGTATTTAGTAGATTCTTCA
rJMSF052K09+ TCTACGTTTATGTTATCTGAGTCTGGCATTCATAATAGTCAGTATTTAGTAGATTCTTCA
                      ____________________________________________________________
consensus TCTACGTTTATGTTATCTGAGTCTGGCATTCATAATAGTCAGTATTTAGTAGATTCTTCA
 
. : . : . : . : . : . :
rJMSF029L04+ ATTACCTTGTGTTGACCTGTCTTTTCTCTGTTTGTAATGGCACATACATCTTTTGTTAGA
rJMSF049B18+ ATTACCTTGTGTTGACCTGTCTTTTCTCTGTTTGTAATGGCACATACATCTTTTGTTAGA
rJMSF052K09+ ATTACCTTGTGTTGACCTGTCTTTTCTCTGTTTGTAATGGCACATACATCTTTTGTTAGA
                      ____________________________________________________________
consensus ATTACCTTGTGTTGACCTGTCTTTTCTCTGTTTGTAATGGCACATACATCTTTTGTTAGA
 
. : . : . : . : . : . :
rJMSF029L04+ AGCTGCAGCCATCAAGATCTATTGAGTATTGAATATTGATATCCCCT
rJMSF049B18+ AGCTGCAGCCATCAAGATCTATTGAGTATTGAATATTGATATCCCCT
rJMSF052K09+ AGCTGCAGCCATCAAGATCTATTGAGTATTGAATATTGATATCCCCTCCTTGTGCACAAT
                      ____________________________________________________________
consensus AGCTGCAGCCATCAAGATCTATTGAGTATTGAATATTGATATCCCCTCCTTGTGCACAAT