| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039M05 | Sequence | 609 | 006756 (3) | gb|AFU52654.1| | 4e-78 | beta-1,3-glucanase 21 [Solanum tuberosum] | 741 | 007256 (4) | ref|XP_009631831.1| | 2e-63 | PREDICTED: glucan endo-1,3-beta-glucosidase 4 [Nicotiana tomentosiformis] ref|XP |
| JMSF043N03 | Sequence | 689 | 019008 | 760 | 007256 (4) | ref|XP_009631831.1| | 1e-51 | PREDICTED: glucan endo-1,3-beta-glucosidase 4 [Nicotiana tomentosiformis] ref|XP | |||
| JMSF052E10 | Sequence | 702 | 006756 (3) | gb|AFU52654.1| | 5e-93 | beta-1,3-glucanase 21 [Solanum tuberosum] | 907 | 007256 (4) | ref|XP_009631831.1| | 2e-83 | PREDICTED: glucan endo-1,3-beta-glucosidase 4 [Nicotiana tomentosiformis] ref|XP |
| JMSF052P03 | Sequence | 703 | 006756 (3) | gb|AFU52654.1| | 2e-96 | beta-1,3-glucanase 21 [Solanum tuberosum] | 953 | 007256 (4) | ref|XP_009631831.1| | 2e-84 | PREDICTED: glucan endo-1,3-beta-glucosidase 4 [Nicotiana tomentosiformis] ref|XP |
This contig is upended
. : . : . : . : . : . :
rJMSF052P03+ ATCCTAACACCCTTTTTNCACTATGAGAGCATGCTCGATGCCTT
____________________________________________________________
consensus ATCCTAACACCCTTTTTNCACTATGAGAGCATGCTCGATGCCTT
. : . : . : . : . : . :
rJMSF052P03+ GGTGGATGCTACGTATAATGCTATTGCAGCTTTCAATTTCTCGAATATCCCCCGTTGTTG
rJMSF052E10+ GTTGTTG
____________________________________________________________
consensus GGTGGATGCTACGTATAATGCTATTGCAGCTTTCAATTTCTCGAATATCCCCCGTTGTTG
. : . : . : . : . : . :
rJMSF052P03+ TGACAGAAACCGGTTGGCCTTGGTTTGGCAGCACGAGTGAGCCCGATGCTACTGTAGAAA
rJMSF052E10+ TGACAGAAACCGGTTGGCCTTGGTTTGGCAGCACGAGTGAGCCCGATGCTACTGTAGAAA
____________________________________________________________
consensus TGACAGAAACCGGTTGGCCTTGGTTTGGCAGCACGAGTGAGCCCGATGCTACTGTAGAAA
. : . : . : . : . : . :
rJMFF039M05+ GTTTCGAATGATACCGGTCCCCCGA
rJMSF052P03+ ACGCGGGGGCTTACAACAATAACTTGATCCGCCGTGTTTCGAATGATACCGGTCCCCCGA
rJMSF052E10+ ACGCGGGGGCTTACAACAATAACTTGATCCGCCGTGTTTCGAATGATACCGGTCCCCCGA
____________________________________________________________
consensus ACGCGGGGGCTTACAACAATAACTTGATCCGCCGTGTTTCGAATGATACCGGTCCCCCGA
. : . : . : . : . : . :
rJMFF039M05+ GTGAGCTGAAAATGCCCATCCATGCTTATATTTACGAGTTGTTTAACGAAGACAAAAGGC
rJMSF052P03+ GTGAGCTGAAAATGCCCATCCATGCTTATATTTACGAGTTGTTTAACGAAGACAAAAGGC
rJMSF043N03+ TTTAACGAAGACAAAAGGC
rJMSF052E10+ GTGAGCTGAAAATGCCCATCCATGCTTATATTTACGAGTTGTTTAACGAAGACAAAAGGC
____________________________________________________________
consensus GTGAGCTGAAAATGCCCATCCATGCTTATATTTACGAGTTGTTTAACGAAGACAAAAGGC
. : . : . : . : . : . :
rJMFF039M05+ CCGGGCCAGTCTCGGAAAGAAGCTGGGGAATCTTTTTCCCTAATGGCAGTGCGGTTTATC
rJMSF052P03+ CCGGGCCAGTCTCGGAAAGAAGCTGGGGAATCTTTTTCCCTAATGGCAGTGCGGTTTATC
rJMSF043N03+ CCGGGCCAGTCTCGGAAAGAAGCTGGGGAATCTTTTTCCCTAATGGCAGTGCGGTTTATC
rJMSF052E10+ CCGGGCCAGTCTCGGAAAGAAGCTGGGGAATCTTTTTCCCTAATGGCAGTGCGGTTTATC
____________________________________________________________
consensus CCGGGCCAGTCTCGGAAAGAAGCTGGGGAATCTTTTTCCCTAATGGCAGTGCGGTTTATC
. : . : . : . : . : . :
rJMFF039M05+ CTATTAATTTGGGCGGTTCAAGTGCAGGCCAAATTGCTAATAATTCTTCAGCCGGGGTTT
rJMSF052P03+ CTATTAATTTGGGCGGTTCAAGTGCAGGCCAAATTGCTAATAATTCTTCAGCCGGGGTTT
rJMSF043N03+ CTATTAATTTGGGCGGTTCAAGTGCAGGCCAAATTGCTAATAATTCTTCAGCCGGGGTTT
rJMSF052E10+ CTATTAATTTGGGCGGTTCAAGTGCAGGCCAAATTGCTAATAATTCTTCAGCCGGGGTTT
____________________________________________________________
consensus CTATTAATTTGGGCGGTTCAAGTGCAGGCCAAATTGCTAATAATTCTTCAGCCGGGGTTT
. : . : . : . : . : . :
rJMFF039M05+ TCTGTATAGCTCAGCCAGGCGCGAGTGAAAATAAGTTGCAAAAGGGAATCGACTGGGCAT
rJMSF052P03+ TCTGTATAGCTCAGCCAGGCGCGAGTGAAAATAAGTTGCAAAAGGGAATCGACTGGGCAT
rJMSF043N03+ TCTGTATAGCTCAGCCAGGCGCGAGTGAAAATAAGTTGCAAAAGGGAATCGACTGGGCAT
rJMSF052E10+ TCTGTATAGCTCAGCCAGGCGCGAGTGAAAATAAGTTGCAAAAGGGAATCGACTGGGCAT
____________________________________________________________
consensus TCTGTATAGCTCAGCCAGGCGCGAGTGAAAATAAGTTGCAAAAGGGAATCGACTGGGCAT
. : . : . : . : . : . :
rJMFF039M05+ GTGGGCCCCAGGGAAATGCTAACTGCTCGGCAATTCAACCGGGACAGCCTTGCTATTCCC
rJMSF052P03+ GTGGGCCCCAGGGAAATGCTAACTGCTCGGCAATTCAACCGGGACAGCCTTGCTATTCCC
rJMSF043N03+ GTGGGCCCCAGGGAAATGCTAACTGCTCGGCAATTCAACCGGGACAGCCTTGCTATTCCC
rJMSF052E10+ GTGGGCCCCAGGGAAATGCTAACTGCTCGGCAATTCAACCGGGACAGCCTTGCTATTCCC
____________________________________________________________
consensus GTGGGCCCCAGGGAAATGCTAACTGCTCGGCAATTCAACCGGGACAGCCTTGCTATTCCC
. : . : . : . : . : . :
rJMFF039M05+ CCGATACTCTGCAAAATCACGCTTCTTATGCCTACAATGACTATTATCAGAGAGTGCAAA
rJMSF052P03+ CCGATACTCTGCAAAATCACGCTTCTTATGCCTACAATGACTATTATCAGAGAGTGCAAA
rJMSF043N03+ CCGATACTCTGCAAAATCACGCTTCTTATGCCTACAATGACTATTATCAGAGAGTGCAAA
rJMSF052E10+ CCGATACTCTGCAAAATCACGCTTCTTATGCCTACAATGACTATTATCAGAGAGTGCAAA
____________________________________________________________
consensus CCGATACTCTGCAAAATCACGCTTCTTATGCCTACAATGACTATTATCAGAGAGTGCAAA
. : . : . : . : . : . :
rJMFF039M05+ GCGTCGGTGGAACTTGTGACTTTGATGGTACAGCAACGACAACTACAGTGGACCCCAGTT
rJMSF052P03+ GCGTCGGTGGAACTTGTGACTTTGATGGTACAGCAACGACAACTACAGTGGACCCCAGTT
rJMSF043N03+ GCGTCGGTGGAACTTGTGACTTTGATGGTACAGCAACGACAACTACAGTGGACCCCAGTT
rJMSF052E10+ GCGTCGGTGGAACTTGTGACTTTGATGGTACAGCAACGACAACTACAGTGGACCCCAGTT
____________________________________________________________
consensus GCGTCGGTGGAACTTGTGACTTTGATGGTACAGCAACGACAACTACAGTGGACCCCAGTT
. : . : . : . : . : . :
rJMFF039M05+ ACGGGTCATGCATATTCACGGGAAGTTCAAATTCAAGCATTGGCGGTGTGCCCACACCGG
rJMSF052P03+ ACGGGTCATGCATATTCACGGGAAGTTCAAATTCAAGCATTGGCGGTGTGCCCACACCGG
rJMSF043N03+ ACGGGTCATGCATATTCACGGGAAGTTCAAATTCAAGCATTGGCGGTGTGCCCACACCGG
rJMSF052E10+ ACGGGTCATGCATATTCACGGGAAGTTCAAATTCAAGCATTGGCGGTGTGCCCACACCGG
____________________________________________________________
consensus ACGGGTCATGCATATTCACGGGAAGTTCAAATTCAAGCATTGGCGGTGTGCCCACACCGG
. : . : . : . : . : . :
rJMFF039M05+ CTTTCGGACCGACAGCCCCAGTAGGTAAAGGCTCAATGGCTCGAGCGCCTGATATTGGGC
rJMSF052P03+ CTTTCGGACCGACAGCCCCAGTAGGTAAAGGCTCAATGGCTCGAGCGCCTGATATTGGGC
rJMSF043N03+ CTTTCGGACCGACAGCCCCAGTAGGTAAAGGCTCAATGGCTCGAGCGCCTGATATTGGGC
rJMSF052E10+ CTTTCGGACCGACAGCCCCAGTAGGTAAAGGCTCAATGGCTCGAGCGCCTGATATTGGGC
____________________________________________________________
consensus CTTTCGGACCGACAGCCCCAGTAGGTAAAGGCTCAATGGCTCGAGCGCCTGATATTGGGC
. : . : . : . : . : . :
rJMFF039M05+ GCGTTTTAGCAGTGCTGTTAGCTCTCGTGTTCCTTGAAGCGAAGGGTAATGTGCTTTTGT
rJMSF052P03+ GCGTTTTAGCAGTGCTGTTAGCTCTCGTGTTCCTTGAAGCGAAGGGTAATGTGCTTTTGT
rJMSF043N03+ GCGTTTTAGCAGTGCTGTTAGCTCTCGTGTTCCTTGAAGCGAAGGGTAATGTGCTTTTGT
rJMSF052E10+ GCGTTTTAGCAGTGCTGTTAGCTCTCGTGTTCCTTGAAGCGAAGGGTAATGTGCTTTTGT
____________________________________________________________
consensus GCGTTTTAGCAGTGCTGTTAGCTCTCGTGTTCCTTGAAGCGAAGGGTAATGTGCTTTTGT
. : . : . : . : . : . :
rJMFF039M05+ AGTGTCGTGATCTTGGTTTCGGGAATGCTTTGTAAGTTGTAAGGCATGGGAAATATAGTT
rJMSF052P03+ AGTGTCGTGATCTTGGTTTCGGGAATGCTTTGTAAGTTGTAAGGCATGGGAAATATAGTT
rJMSF043N03+ AGTGTCGTGATCTTGGTTTCGGGAATGCTTTGTAAGTTGTAAGGCATGGGAAATATAGTT
rJMSF052E10+ AGTGTCGTGATCTTGGTTTCGGGAATGCTTTGTAAGTTGTAAGGCATGGGAAATATAGTT
____________________________________________________________
consensus AGTGTCGTGATCTTGGTTTCGGGAATGCTTTGTAAGTTGTAAGGCATGGGAAATATAGTT
. : . : . : . : . : . :
rJMFF039M05+ AGGAGTTGAAGCAGCTTTTAGCTTTGTTGAAAATACACCATTTTTGGGGTTCATAT
rJMSF052P03+ AGGAGTTGAAGCAGCTTTTAGCTTTGTTGAAAATACACCATTTTTGGGGTTCATATTCTC
rJMSF043N03+ AGGAGTTGAAGCAGCTTTTAGCTTTGTTGAAAATACACCATTTTTGGGGTTCATATTCTC
rJMSF052E10+ AGGAGTTGAAGCAGCTTTTAGCTTTGTTGAAAATACACCATTTTTGGGGTTCATATTCTC
____________________________________________________________
consensus AGGAGTTGAAGCAGCTTTTAGCTTTGTTGAAAATACACCATTTTTGGGGTTCATATTCTC
. : . : . : . : . : . :
rJMSF052P03+ CATTT
rJMSF043N03+ CATTTTGTTATCATGCTAGTGAAAAGCT
rJMSF052E10+ CATTTTGTTATCATGCTAGTGAAAAGCTTAAAGCCTTTGCATTCTTGGTAAAGAACATTT
____________________________________________________________
consensus CATTTTGTTATCATGCTAGTGAAAAGCTTAAAGCCTTTGCATTCTTGGTAAAGAACATTT