Contig 007251:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014I06Sequence533007251 (10)gb|ACF21004.1|2e-701-deoxy-D-xylulose 5-phosphate synthase [Salvia miltiorrhiza]788007251 (10)ref|XP_009615219.1|1e-97PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Nic
JMSF024C07Sequence694007251 (10)ref|XP_009615219.1|3e-98PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Nic714007251 (10)ref|XP_009615219.1|4e-98PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Nic
JMSF033A02Sequence695007251 (10)ref|XP_009615219.1|4e-98PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Nic654007251 (10)ref|XP_009793959.1|2e-89PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Nic
JMSF041C17Sequence764007251 (10)ref|XP_009615219.1|9e-95PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Nic552007251 (10)ref|XP_009793959.1|7e-90PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Nic
JMSF051C07Sequence648007251 (10)ref|XP_009615219.1|3e-96PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Nic733007251 (10)ref|XP_009615219.1|3e-95PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Nic

Alignment

This contig is upended


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JMSF024C07-                                                        GAGTGAGCCTTGAAT
JMSF051C07-                                                        GAGTGAGCCTTGAAT
JMSF014I06-                                                        GAGTGAGCCTTGAAT
JMSF033A02-                                                        GAGTGAGCCTTGAAT
JMSF041C17-                                                        GAGTGAGCCTTGAAT
                      ____________________________________________________________
consensus                                                          GAGTGAGCCTTGAAT
 
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JMSF024C07-           CTGCACTACCTCACCTCTGCAATTCACACACATACTAGATACTACACTACTGAAAAAAAG
JMSF051C07-           CTGCACTACCTCACCTCTGCAATTCACACACATACTAGATACTACACTACTGAAAAAAAG
JMSF014I06-           CTGCACTACCTCACCTCTGCAATTCACACACATACTAGATACTACACTACTGAAAAAAAG
JMSF033A02-           CTGCACTACCTCACCTCTGCAATTCACACACATACTAGATACTACACTACTGAAAAAAAG
rJMSF024C07+                         TCTGCAATTCACACACATACTAGATACTACACTACTGAAAAAAAG
JMSF041C17-           CTGCACTACCTCACCTCTGCAATTCACACACATACTAGATACTACACTACTGAAAAAAAG
rJMSF014I06+                           TGCAATTCACACACATACTAGATACTACACTACTGAAAAAAAG
                      ____________________________________________________________
consensus             CTGCACTACCTCACCTCTGCAATTCACACACATACTAGATACTACACTACTGAAAAAAAG
 
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JMSF024C07-           AAATGGCTCTTCCTACATTTGCATTCACTGGCACTTCCAATTCCGCTTATCCCCAAAACC
JMSF051C07-           AAATGGCTCTTCCTACATTTGCATTCACTGGCACTTCCAATTCCGCTTATCCCCAAAACC
JMSF014I06-           AAATGGCTCTTCCTACATTTGCATTCACTGGCACTTCCAATTCCGCTTATCCCCAAAACC
JMSF033A02-           AAATGGCTCTTCCTACATTTGCATTCACTGGCACTTCCAATTCCGCTTATCCCCAAAACC
rJMSF024C07+          AAATGGCTCTTCCTACATTTGCATTCACTGGCACTTCCAATTCCGCTTATCCCCAAAACC
JMSF041C17-           AAATGGCTCTTCCTACATTTGCATTCACTGGCACTTCCAATTCCGCTTATCCCC-AAACC
rJMSF014I06+          AAATGGCTCTTCCTACATTTGCATTCACTGGCACTTCCAATTCCGCTTATCCCCAAAACC
rJMSF051C07+                                                         TATCCCCAAAACC
                      ____________________________________________________________
consensus             AAATGGCTCTTCCTACATTTGCATTCACTGGCACTTCCAATTCCGCTTATCCCCAAAACC
 
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JMSF024C07-           ATGCTGCAGCTTTCTGCTCTTACTGGCTCCATGGAACAGATTTGCAGTTTCACCTCCATT
JMSF051C07-           ATGCTGCAGCTTTCTGCTCTTACTGGCTCCATGGAACAGATTTGCAGTTTCACCTCCATT
JMSF014I06-           ATGCTGCAGCTTTCTGCTCTTACTGGCTCCATGGAACAGATTTGCAGTTTCACCTCCATT
JMSF033A02-           ATGCTGCAGCTTTCTGCTCTTACTGGCTCCATGGAACAGATTTGCAGTTTCACCTCCATT
rJMSF041C17+                                                                  CATT
rJMSF024C07+          ATGCTGCAGCTTTCTGCTCTTACTGGCTCCATGGAACAGATTTGCAGTTTCACCTCCATT
JMSF041C17-           ATGCTGCAGCTTTCTGCTCTTACTGGCTCCATGGAACAGATTTGCAGTTTCACCTCCATT
rJMSF014I06+          ATGCTGCAGCTTTCTGCTCTTACTGGCTCCATGGAACAGATTTGCAGTTTCACCTCCATT
rJMSF051C07+          NTGCTGCAGCTTTCTGCTCTTACTGGCTCCATGGAACAGATTTGCAGTTTCACCTCCATT
                      ____________________________________________________________
consensus             ATGCTGCAGCTTTCTGCTCTTACTGGCTCCATGGAACAGATTTGCAGTTTCACCTCCATT
 
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JMSF024C07-           TTAAACCCACCCAGGTGAAGAAGAGATCAAGTGGGATTCAGGCAGTAGTGACAGAGAAAG
JMSF051C07-           TTAAACCCACCCAGGTGAAGAAGAGATCAAGTGGGATTCAGGCAGTAGTGACAGAGAAAG
JMSF014I06-           TTAAACCCACCCAGGTGAAGAAGAGATCAAGTGGGATTCAGGCAGTAGTGACAGAGAAAG
JMSF033A02-           TTAAACCCACCCAGGTGAAGAAGAGATCAAGTGGGATTCAGGCAGTAGTGACAGAGAAAG
rJMSF041C17+          TTAAACCCACCCAGGTGAAGAAGAGATCAAGTGGGATTCAGGCAGTAGTGACAGAGAAAG
rJMSF024C07+          TTAAACCCACCCAGGTGAAGAAGAGATCAAGTGGGATTCAGGCAGTAGTGACAGAGAAAG
JMSF041C17-           TTAAACCCACCCAGGTGAAGAAGAGATCAAGTGGGATTCAGGCAGTAGTGACAGAGAAAG
rJMSF014I06+          TTAAACCCACCCAGGTGAAGAAGAGATCAAGTGGGATTCAGGCAGTAGTGACAGAGAAAG
rJMSF033A02+           TAAACCCACCCAGGTGAAGAAGAGATCAAGTGGGATTCAGGCAGTAGTGACAGAGAAAG
rJMSF051C07+          TTAAACCCACCCAGGTGAAGAAGAGATCAAGTGGGATTCAGGCAGTAGTGACAGAGAAAG
                      ____________________________________________________________
consensus             TTAAACCCACCCAGGTGAAGAAGAGATCAAGTGGGATTCAGGCAGTAGTGACAGAGAAAG
 
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JMSF024C07-           GGATGTATTACTCACAGAGGCCACCAACTCCACTTTTGGACACCATTAACTATCCAATTC
JMSF051C07-           GGATGTATTACTCACAGAGGCCACCAACTCCACTTTTGGACACCATTAACTATCCAATTC
JMSF014I06-           GGATGTATTACTCACAGAGGCCACCAACTCCACTTTTGGACACCATTAACTATCCAATTC
JMSF033A02-           GGATGTATTACTCACAGAGGCCACCAACTCCACTTTTGGACACCATTAACTATCCAATTC
rJMSF041C17+          GGATGTATTACTCACAGAGGCCACCAACTCCACTTTTGGACACCATTAACTATCCAATTC
rJMSF024C07+          GGATGTATTACTCACAGAGGCCACCAACTCCACTTTTGGACACCATTAACTATCCAATTC
JMSF041C17-           GGATGTATTACTCACAGAGGCCACCAACTCCACTTTTGGACACCATTAACTATCCAATTC
rJMSF014I06+          GGATGTATTACTCACAGAGGCCACCAACTCCACTTTTGGACACCATTAACTATCCAATTC
rJMSF033A02+          GGATGTATTACTCACAGAGGCCACCAACTCCACTTTTGGACACCATTAACTATCCAATTC
rJMSF051C07+          GGATGTATTACTCACAGAGGCCACCAACTCCACTTTTGGACACCATTAACTATCCAATTC
                      ____________________________________________________________
consensus             GGATGTATTACTCACAGAGGCCACCAACTCCACTTTTGGACACCATTAACTATCCAATTC
 
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JMSF024C07-           ACATGAAAAATCTGTCGGTGAAGGAACTGGAGCAACTTGCTGATGAGATAAGGTCTGATA
JMSF051C07-           ACATGAAAAATCTGTCGGTGAAGGAACTGGAGCAACTTGCTGATGAGATAAGGTCTGATA
JMSF014I06-           ACATGAAAAATCTGTCGGTGAAGGAACTGGAGCAACTTGCTGATGAGATAAGGTCTGATA
JMSF033A02-           ACATGAAAAATCTGTCGGTGAAGGAACTGGAGCAACTTGCTGATGAGATAAGGTCTGATA
rJMSF041C17+          ACATGAAAAATCTGTCGGTGAAGGAACTGGAGCAACTTGCTGATGAGATAAGGTCTGATA
rJMSF024C07+          ACATGAAAAATCTGTCGGTGAAGGAACTGGAGCAACTTGCTGATGAGATAAGGTCTGATA
JMSF041C17-           ACATGAAAAATCTGTCGGTGAAGGAACTGGAGCAACTTGCTGATGAGATAAGGTCTGATA
rJMSF014I06+          ACATGAAAAATCTGTCGGTGAAGGAACTGGAGCAACTTGCTGATGAGATAAGGTCTGATA
rJMSF033A02+          ACATGAAAAATCTGTCGGTGAAGGAACTGGAGCAACTTGCTGATGAGATAAGGTCTGATA
rJMSF051C07+          ACATGAAAAATCTGTCGGTGAAGGAACTGGAGCAACTTGCTGATGAGATAAGGTCTGATA
                      ____________________________________________________________
consensus             ACATGAAAAATCTGTCGGTGAAGGAACTGGAGCAACTTGCTGATGAGATAAGGTCTGATA
 
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JMSF024C07-           CGATATTTAATGTTTCAAAGACGGGGGGTCATCTTGGCTCCAACCTGGGTGTTGTGGAGC
JMSF051C07-           CGATATTTAATGTTTCAAAGACGGGGGGTCATCTTGGCTCCAACCTGGGTGTTGTGGAGC
JMSF014I06-           CGATATTTAATGTTTCAAAGACGGGGGGTCATCTTGGCTCCAACCTGGGTGTTGTGGAGC
JMSF033A02-           CGATATTTAATGTTTCAAAGACGGGGGGTCATCTTGGCTCCAACCTGGGTGTTGTGGAGC
rJMSF041C17+          CGATATTTAATGTTTCAAAGACGGGGGGTCATCTTGGCTCCAACCTGGGTGTTGTGGAGC
rJMSF024C07+          CGATATTTAATGTTTCAAAGACGGGGGGTCATCTTGGCTCCAACCTGGGTGTTGTGGAGC
JMSF041C17-           CGATATTTAATGTTTCAAAGACGGGGGGTCATCTTGGCTCCAACCTGGGTGTTGTGGAGC
rJMSF014I06+          CGATATTTAATGTTTCAAAGACGGGGGGTCATCTTGGCTCCAACCTGGGTGTTGTGGAGC
rJMSF033A02+          CGATATTTAATGTTTCAAAGACGGGGGGTCATCTTGGCTCCAACCTGGGTGTTGTGGAGC
rJMSF051C07+          CGATATTTAATGTTTCAAAGACGGGGGGTCATCTTGGCTCCAACCTGGGTGTTGTGGAGC
                      ____________________________________________________________
consensus             CGATATTTAATGTTTCAAAGACGGGGGGTCATCTTGGCTCCAACCTGGGTGTTGTGGAGC
 
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JMSF024C07-           TCACAGTAGCACTTCATTATGTGTTCAACACACCGCAGGATAAGATTCTGTGGGATGTGG
JMSF051C07-           TCACAGTAGCACTTCATTATGTGTTCAACACACCGCAGGATAAGATTCTGTGGGATGTGG
JMSF014I06-           TCACAGTAGCACTTCATTATGTGTTCAACACACCGCAGGATAAGATTCTGTGGGATGTGG
JMSF033A02-           TCACAGTAGCACTTCATTATGTGTTCAACACACCGCAGGATAAGATTCTGTGGGATGTGG
rJMSF041C17+          TCACAGTAGCACTTCATTATGTGTTCAACACACCGCAGGATAAGATTCTGTGGGATGTGG
rJMSF024C07+          TCACAGTAGCACTTCATTATGTGTTCAACACACCGCAGGATAAGATTCTGTGGGATGTGG
JMSF041C17-           TCACAGTAGCACTTCATTATGTGTTCAACACACCGCAGGATAAGATTCTGTGGGATGTGG
rJMSF014I06+          TCACAGTAGCACTTCATTATGTGTTCAACACACCGCAGGATAAGATTCTGTGGGATGTGG
rJMSF033A02+          TCACAGTAGCACTTCATTATGTGTTCAACACACCGCAGGATAAGATTCTGTGGGATGTGG
rJMSF051C07+          TCACAGTAGCACTTCATTATGTGTTCAACACACCGCAGGATAAGATTCTGTGGGATGTGG
                      ____________________________________________________________
consensus             TCACAGTAGCACTTCATTATGTGTTCAACACACCGCAGGATAAGATTCTGTGGGATGTGG
 
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JMSF024C07-           GTCATCAGTCCTACCCTCATAAAATTTTGACGGGTAGAAGGGGGAAGATGTCGACACTGA
JMSF051C07-           GTCATCAGTCCTACCCTCATAAAATTTTGACGGGTAGAAGGGGGAAGATGTCGACACTGA
JMSF014I06-           GTCATCAGTCCTACCCTCATAAAATTTTGACGGGTAGA                      
JMSF033A02-           GTCATCAGTCCTACCCTCATAAAATTTTGACGGGTAGAAGGGGGAAGATGTCGACACTGA
rJMSF041C17+          GTCATCAGTCCTACCCTCATAAAATTTTGACGGGTAGAAGGGGGAAGATGTCGACACTGA
rJMSF024C07+          GTCATCAGTCCTACCCTCATAAAATTTTGACGGGTAGAAGGGGGAAGATGTCGACACTGA
JMSF041C17-           GTCATCAGTCCTACCCTCATAAAATTTTGACGGGTAGAAGGGGGAAGATGTCGACACTGA
rJMSF014I06+          GTCATCAGTCCTACCCTCATAAAATTTTGACGGGTAGAAGGGGGAAGATGTCGACACTGA
rJMSF033A02+          GTCATCAGTCCTACCCTCATAAAATTTTGACGGGTAGAAGGGGGAAGATGTCGACACTGA
rJMSF051C07+          GTCATCAGTCCTACCCTCATAAAATTTTGACGGGTAGAAGGGGGAAGATGTCGACACTGA
                      ____________________________________________________________
consensus             GTCATCAGTCCTACCCTCATAAAATTTTGACGGGTAGAAGGGGGAAGATGTCGACACTGA
 
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JMSF024C07-           GACAGACAAATGGGCTTTCTGGATTTACCAAGCGTTCAGAGAGCGACCATGATTGCTTTG
JMSF051C07-           GACAGACAAATGGGCTTTCTGGATTTACCAAGCGTTCAGAGAGCGACCATGATTGCTTTG
JMSF033A02-           GACAGACAAATGGGCTTTCTGGATTTACCAAGCGTTCAGAGAGCGACCATGATTGCTTTG
rJMSF041C17+          GACAGACAAATGGGCTTTCTGGATTTACCAAGCGTTCAGAGAGCGACCATGATTGCTTTG
rJMSF024C07+          GACAGACAAATGGGCTTTCTGGATTTACCAAGCGTTCAGAGAGCGACCATGATTGCTTTG
JMSF041C17-           GACAGACAAATGGGCTTTCTGGATTTACCAAGCGTTCAGAGAGCGACCATGATTGCTTTG
rJMSF014I06+          GACAGACAAATGGGCTTTCTGGATTTACCAAGCGTTCAGAGAGCGACCATGATTGCTTTG
rJMSF033A02+          GACAGACAAATGGGCTTTCTGGATTTACCAAGCGTTCAGAGAGCGACCATGATTGCTTTG
rJMSF051C07+          GACAGACAAATGGGCTTTCTGGATTTACCAAGCGTTCAGAGAGCGACCATGATTGCTTTG
                      ____________________________________________________________
consensus             GACAGACAAATGGGCTTTCTGGATTTACCAAGCGTTCAGAGAGCGACCATGATTGCTTTG
 
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JMSF024C07-           GTACCGGCCACAGTTCAACCACTATCTCAGCTGGATTAGGTAATTTTTTATGACAAATTA
JMSF051C07-           GTACCGGCCACAGTTCAACCACTATCTCAGCTG                           
JMSF033A02-           GTACCGGCCACAGTTCAACCACTATCTCAGCTGGATTAGGTAATTTTTTATGACAAATTA
rJMSF041C17+          GTACCGGCCACAGTTCAACCACTATCTCAGCTGGATTAGGTAATTTTTTATGACAAATTA
rJMSF024C07+          GTACCGGCCACAGTTCAACCACTATCTCAGCTGGATTAGGTAATTTTTTATGACAAATTA
JMSF041C17-           GTACCGGCCACAGTTCAACCACTATCTCAGCTGGATTAGGTAATTTTTTATGACAAATTA
rJMSF014I06+          GTACCGGCCACAGTTCAACCACTATCTCAGCTGGATTAGGTAATTTTTTATGACAAATTA
rJMSF033A02+          GTACCGGCCACAGTTCAACCACTATCTCAGCTGGATTAGGTAATTTTTTATGACAAATTA
rJMSF051C07+          GTACCGGCCACAGTTCAACCACTATCTCAGCTGGATTAGGTAATTTTTTATGACAAATTA
                      ____________________________________________________________
consensus             GTACCGGCCACAGTTCAACCACTATCTCAGCTGGATTAGGTAATTTTTTATGACAAATTA
 
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JMSF024C07-           TTGTACGTAATGCGGTCCG                                         
JMSF033A02-           TTGTACGTAATGCGGTCCGA                                        
rJMSF041C17+          TTGTACGTAATGCGGTCCGAAACAATATCGTTTTGATGTTTAAAAAAAATATTTCTTGTT
rJMSF024C07+          TTGTACGTAATGCGGTCCGAAACAATATCGTTTTGATGTTTAAAAAAAATATTTCTTGTT
JMSF041C17-           TTGTACGTAATGCGGTCCGAAACAATATCGTTTTGATGTTTAAAAAAAATATTTCTTGTT
rJMSF014I06+          TTGTACGTAATACGGTCCGAAACAATATCGTTTTGATGTTTAAAAAAAATATTTCTTGTT
rJMSF033A02+          TTGTACGTAATGCGGTCCGAAACAATATCGTTTTGATGTTTAAAAAAAATATTTCTTGTT
rJMSF051C07+          TTGTACGTAATGCGGTCCGAAACAATATCGTTTTGATGTTTAAAAAAAATATTTCTTGTT
                      ____________________________________________________________
consensus             TTGTACGTAATGCGGTCCGAAACAATATCGTTTTGATGTTTAAAAAAAATATTTCTTGTT
 
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rJMSF041C17+          TCTCGCTT                                                    
rJMSF024C07+          TCTCGCTTG                                                   
JMSF041C17-           TCTCGCTTGTTAGAATAATGAATATTCTGA                              
rJMSF014I06+          TCTCGCTTGTTAGAATAATGAATATTCTGAGATAAGATAATGCATTTTGAATTAGAATAA
rJMSF033A02+          TCTCGCTTGTTAGAATAATGAATATTCTGAGATAAGATAATGCATTTTGAATTAGAATAA
rJMSF051C07+          TCTCGCTTGTTAGAATAATGAATATTCTGAGATAAGATAATGCATTTTGAATTAGAATAA
                      ____________________________________________________________
consensus             TCTCGCTTGTTAGAATAATGAATATTCTGAGATAAGATAATGCATTTTGAATTAGAATAA
 
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rJMSF014I06+          TGTATTTTATGTGTTAGAATAGT                                     
rJMSF033A02+          TGTATTTTATGTGTTAGAATAGTGTATTTTATTTGTGCTATAATAGTGAAGATAA     
rJMSF051C07+          TGTATTTTATGTGTTAGAATAGTGTATTTTATTTGTGCTATAATAGTGAAGATAATATTT
                      ____________________________________________________________
consensus             TGTATTTTATGTGTTAGAATAGTGTATTTTATTTGTGCTATAATAGTGAAGATAATATTT