| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007H24 | Sequence | 307 | 010932 (5) | ref|XP_009601270.1| | 98.2 | PREDICTED: uncharacterized protein LOC104096590 [Nicotiana tomentosiformis] | 757 | 007250 (4) | ref|XP_009763074.1| | 3e-73 | PREDICTED: trafficking protein particle complex subunit 13 isoform X1 [Nicotian |
| JMSF007O18 | Sequence | 304 | 010932 (5) | ref|XP_009601270.1| | 98.2 | PREDICTED: uncharacterized protein LOC104096590 [Nicotiana tomentosiformis] | 752 | 007250 (4) | ref|XP_009763074.1| | 6e-73 | PREDICTED: trafficking protein particle complex subunit 13 isoform X1 [Nicotian |
| JMSF008H24 | Sequence | 237 | 010932 (5) | ref|XP_009601270.1| | 65.5 | PREDICTED: uncharacterized protein LOC104096590 [Nicotiana tomentosiformis] | 752 | 007250 (4) | ref|XP_009763074.1| | 2e-73 | PREDICTED: trafficking protein particle complex subunit 13 isoform X1 [Nicotian |
| JMSF050N03 | Sequence | 696 | 010932 (5) | ref|XP_011086106.1| | 1e-40 | PREDICTED: trafficking protein particle complex subunit 13 [Sesamum indicum] | 752 | 007250 (4) | ref|XP_009790216.1| | 1e-50 | PREDICTED: trafficking protein particle complex subunit 13-like, partial [Nicot |
This contig is upended
. : . : . : . : . : . :
rJMSF007O18+ TCA
rJMSF008H24+ TCA
rJMSF007H24+ TATCATCA
____________________________________________________________
consensus TATCATCA
. : . : . : . : . : . :
rJMSF007O18+ GANGGATCTACACTGCTGAAAGTTGAGGGTAGTAATGTCCTAGGCAAACTTCAGATAACA
rJMSF008H24+ GAAGGATCTACNCTGCTGAAAGTTGAGGGTAGTAATGTCCTAGGCAAACTTCAGATAACA
rJMSF007H24+ GAAGGATCTACACTGCTGAAAGNTGAGGGTAGTAATGTCCTAGGCAAACTTCAGATAACA
____________________________________________________________
consensus GAAGGATCTACACTGCTGAAAGTTGAGGGTAGTAATGTCCTAGGCAAACTTCAGATAACA
. : . : . : . : . : . :
rJMSF007O18+ TGGCGGACAAATTTGGGTGAACCGGGGCGTCTTCAGACGCAACAAATTCTTGGTAGTCCC
rJMSF008H24+ TGGCGGACAAATTTGGGTGAACCGGGGCGTCTTCAGACGCAACAAATTCTTGGTAGTCCC
rJMSF007H24+ TGGCGGACAAATTTGGGTGAACCGGGGCGTCTTCAGACGCAACAAATTCTTGGTAGTCCC
rJMSF050N03+ GTCTTCAGACGCAACAAATTCTTGGTAGTCCC
____________________________________________________________
consensus TGGCGGACAAATTTGGGTGAACCGGGGCGTCTTCAGACGCAACAAATTCTTGGTAGTCCC
. : . : . : . : . : . :
rJMSF007O18+ ATTGTTCACAATGACATAGAGTTGGGGGCAGTGGAGGTACCGCCTATAATCATCATTGAG
rJMSF008H24+ ATTGTTCACAATGACATAGAGTTGGGGGCAGTGGAGGTACCGCCTATAATCATCATTGAG
rJMSF007H24+ ATTGTTCACAATGACATAGAGTTGGGGGCAGTGGAGGTACCGCCTATAATCATCATTGAG
rJMSF050N03+ ATTGTTCACAATGACATAGAGTTGGGGGCAGTGGAGGTACCGCCTATAATCATCATTGAG
____________________________________________________________
consensus ATTGTTCACAATGACATAGAGTTGGGGGCAGTGGAGGTACCGCCTATAATCATCATTGAG
. : . : . : . : . : . :
rJMSF007O18+ AAGCCTTTTTTGGTACGCTTCAAGCTCACAAACCAGACTGACAGGATATTGGGTCCTTTT
rJMSF008H24+ AAGCCTTTTTTGGTACGCTTCAAGCTCACAAACCAGACTGACAGGATATTGGGTCCTTTT
rJMSF007H24+ AAGCCTTTTTTGGTACGCTTCAAGCTCACAAACCAGACTGACAGGATATTGGGTCCTTTT
rJMSF050N03+ AAGCCTTTTTTGGTACGCTTCAAGCTCACAAACCAGACTGACAGGATATTGGGTCCTTTT
____________________________________________________________
consensus AAGCCTTTTTTGGTACGCTTCAAGCTCACAAACCAGACTGACAGGATATTGGGTCCTTTT
. : . : . : . : . : . :
rJMSF007O18+ GAAGTTTGGTTGTCACAAAGCGAATCACTAGATGAGAAATATGTGATGGTTAATGGTCCT
rJMSF008H24+ GAAGTTTGGTTGTCACAAAGCGAATCACTAGATGAGAAATATGTGATGGTTAATGGTCCT
rJMSF007H24+ GAAGTTTGGTTGTCACAAAGCGAATCACTAGATGAGAAATATGTGATGGTTAATGGTCCT
rJMSF050N03+ GAAGTTTGGTTGTCACAAAGCGAATCACTAGATGAGAAATATGTGATGGTTAATGGTCCT
____________________________________________________________
consensus GAAGTTTGGTTGTCACAAAGCGAATCACTAGATGAGAAATATGTGATGGTTAATGGTCCT
. : . : . : . : . : . :
rJMSF007O18+ CAAACAATGCCTTTGCCACAGCTTGAAGCATTTGGCTCTTCAGAATTTCGTCTGAACTTG
rJMSF008H24+ CAAACAATGCCTTTGCCACAGCTTGAAGCATTTGGCTCTTCAGAATTTCGTCTGAACTTG
rJMSF007H24+ CAAACAATGCCTTTGCCACAGCTTGAAGCATTTGGCTCTTCAGAATTTCGTCTGAACTTG
rJMSF050N03+ CAAACAATGCCTTTGCCACAGCTTGAAGCATTTGGCTCTTCAGAATTTCGTCTGAACTTG
____________________________________________________________
consensus CAAACAATGCCTTTGCCACAGCTTGAAGCATTTGGCTCTTCAGAATTTCGTCTGAACTTG
. : . : . : . : . : . :
rJMSF007O18+ GTTGCTGTAAAACAAGGCATACAGAAAATTGCAGGCATTACAATATTTGACATGCATGAG
rJMSF008H24+ GTTGCTGTAAAACAAGGCATACAGAAAATTGCAGGCATTACAATATTTGACATGCATGAG
rJMSF007H24+ GTTGCTGTAAAACAAGGCATACAGAAAATTGCAGGCATTACAATATTTGACATGCATGAG
rJMSF050N03+ GTTGCTGTAAAACAAGGCATACAGAAAATTGCAGGCATTACAATATTTGACATGCATGAG
____________________________________________________________
consensus GTTGCTGTAAAACAAGGCATACAGAAAATTGCAGGCATTACAATATTTGACATGCATGAG
. : . : . : . : . : . :
rJMSF007O18+ AAGAAAACTTATGATTCTTTATTAGAATTGGAGATATTTGTCGATCCAGAGTAGTACTAA
rJMSF008H24+ AAGAAAACTTATGATTCTTTATTAGAATTGGAGATATTTGTCGATCCAGAGTAGTACTAA
rJMSF007H24+ AAGAAAACTTATGATTCTTTATTAGAATTGGAGATATTTGTCGATCCAGAGTAGTACTAA
rJMSF050N03+ AAGAAAACTTATGATTCTTTATTAGAATTGGAGATATTTGTCGATCCAGAGTAGTACTAA
____________________________________________________________
consensus AAGAAAACTTATGATTCTTTATTAGAATTGGAGATATTTGTCGATCCAGAGTAGTACTAA
. : . : . : . : . : . :
rJMSF007O18+ GCAATTTTTGGCTGCGATGTCCTACAGAATCTTATTTCCTGCTTTGTTTGAAGAAGCCTT
rJMSF008H24+ GCAATTTTTGGCTGCGATGTCCTACAGAATCTTATTTCCTGCTTTGTTTGAAGAAGCCTT
rJMSF007H24+ GCAATTTTTGGCTGCGATGTCCTACAGAATCTTATTTCCTGCTTTGTTTGAAGAAGCCTT
rJMSF050N03+ GCAATTTTTGGCTGCGATGTCCTACAGAATCTTATTTCCTGCTTTGTTTGAAGAAGCCTT
____________________________________________________________
consensus GCAATTTTTGGCTGCGATGTCCTACAGAATCTTATTTCCTGCTTTGTTTGAAGAAGCCTT
. : . : . : . : . : . :
rJMSF007O18+ TTCATAGTCCAAGAATACACGACCAGATAAGCCCAATTCACTCCCCATGAATAGGTTGGG
rJMSF008H24+ TTCATAGTCCAAGAATACACGACCAGATAAGCCCAATTCACTCCCCATGAATAGGTTGGG
rJMSF007H24+ TTCATAGTCCAAGAATACACGACCAGATAAGCCCAATTCACTCCCCATGAATAGGTTGGG
rJMSF050N03+ TTCATAGTCCAAGAATACACGACCAGATAAGCCCAATTCACTCCCCATGAATAGGTTGGG
____________________________________________________________
consensus TTCATAGTCCAAGAATACACGACCAGATAAGCCCAATTCACTCCCCATGAATAGGTTGGG
. : . : . : . : . : . :
rJMSF007O18+ AAAATATAAGCAGGAGATTTTCATATCAAGATGCTGAGTTCAATCTTCTGGGATTGAGTT
rJMSF008H24+ AAAATATAAGCAGGAGATTTTCATATCAAGATGCTGAGTTCAATCTTCTGGGATTGAGTT
rJMSF007H24+ AAAATATAAGCAGGAGATTTTCATATCAAGATGCTGAGTTCAATCTTCTGGGATTGAGTT
rJMSF050N03+ AAAATATAAGCAGGAGATTTTCATATCAAGATGCTGAGTTCAATCTTCTGGGATTGAGTT
____________________________________________________________
consensus AAAATATAAGCAGGAGATTTTCATATCAAGATGCTGAGTTCAATCTTCTGGGATTGAGTT
. : . : . : . : . : . :
rJMSF007O18+ GCAACTGTATACTACAGTATTTAGATGTTTGGATAAGTAATCAATATATTCTTAATCTTC
rJMSF008H24+ GCAACTGTATACTACAGTATTTAGATGTTTGGATAAGTAATCAATATATTCTTAATCTTC
rJMSF007H24+ GCAACTGTATACTACAGTATTTAGATGTTTGGATAAGTAATCAATATATTCTTAATCTTC
rJMSF050N03+ GCAACTGTATACTACAGTATTTAGATGTTTGGATAAGTAATCAATATATTCTTAATCTTC
____________________________________________________________
consensus GCAACTGTATACTACAGTATTTAGATGTTTGGATAAGTAATCAATATATTCTTAATCTTC
. : . : . : . : . : . :
rJMSF007O18+ AGTTTTGGCATACCTTTCATTAGTCAAAT
rJMSF008H24+ AGTTTTGGCATACCTGTCATTAGNCAAAT
rJMSF007H24+ AGTTTTGGCATACCTTTCATTAGTCAAAT
rJMSF050N03+ AGTTTTGGCATACCTTTCATTAGTCAAATTGGATTGGTTGATGTCTTTAATTAGAGGGAT
____________________________________________________________
consensus AGTTTTGGCATACCTTTCATTAGTCAAATTGGATTGGTTGATGTCTTTAATTAGAGGGAT
. : . : . : . : . : . :
rJMSF050N03+ AAAAGTGTTCCTTGCATAGTTGCATATATTCTCACTTTGATTTGACCAAGTAATAGTGTA
____________________________________________________________
consensus AAAAGTGTTCCTTGCATAGTTGCATATATTCTCACTTTGATTTGACCAAGTAATAGTGTA