Contig 007249:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF050M15Sequence664002473 (2)ref|XP_009609801.1|1e-10PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Nicotiana tomento770007249 (2)ref|XP_006432761.1|4e-11hypothetical protein CICLE_v10003799mg, partial [Citrus clementina] gb|ESR46001.
JMSF050O19Sequence638002473 (2)ref|XP_009609801.1|1e-10PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Nicotiana tomento758007249 (2)ref|XP_006432761.1|4e-11hypothetical protein CICLE_v10003799mg, partial [Citrus clementina] gb|ESR46001.

Alignment

This contig is upended


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rJMSF050O19+                               CAGATATATGCAGAGTTCATAGTGCGCATGATTGATCCA
rJMSF050M15+                    AACCCTCNACTCAGATATATGCAGAGTTCATAGTGCGCATGATTGATCCA
                      ____________________________________________________________
consensus                       AACCCTCNACTCAGATATATGCAGAGTTCATAGTGCGCATGATTGATCCA
 
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rJMSF050O19+          TCTAATTCCAATCACATTTCATCGTCCAAACCAGGTATATATTTGTA-CCAATATATATT
rJMSF050M15+          TCTAATTCCAATCACATTTCATCGTCCAAACCAGGTATATATTTGTACCCAATATATATT
                      ____________________________________________________________
consensus             TCTAATTCCAATCACATTTCATCGTCCAAACCAGGTATATATTTGTACCCAATATATATT
 
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rJMSF050O19+          TTTTTTGAATGCTACTCACTCTATTACAATGTAGTATCTGTTCATAACTACTTTCTCAAT
rJMSF050M15+          TTTTTTGAATGCTACTCACTCTATTACAATGTAGTATCTGTTCATAACTACTTTCTCAAT
                      ____________________________________________________________
consensus             TTTTTTGAATGCTACTCACTCTATTACAATGTAGTATCTGTTCATAACTACTTTCTCAAT
 
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rJMSF050O19+          CTGTTAAAGCACAAAGAGACTATTTTCTCAACATGTTGAAGCACAAAGAGTCAACACTGT
rJMSF050M15+          CTGTTAAAGCACAAAGAGACTATTTTCTCAACATGTTGAAGCACAAAGAGTCAACACTGT
                      ____________________________________________________________
consensus             CTGTTAAAGCACAAAGAGACTATTTTCTCAACATGTTGAAGCACAAAGAGTCAACACTGT
 
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rJMSF050O19+          CTCCATTGAGGCTCGAACCCATAATACTGTCTCCACTGAGGTTCGAACCCACAATACTGT
rJMSF050M15+          CTCCATTGAGGCTCGAACCCATAATACTGTCTCCACTGAGGTTCGAACCCACAATACTGT
                      ____________________________________________________________
consensus             CTCCATTGAGGCTCGAACCCATAATACTGTCTCCACTGAGGTTCGAACCCACAATACTGT
 
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rJMSF050O19+          CTCCACTAAGGCTCAAACCTACAACCTCTCGTATGAGAGTCCAACCTTTGGTGCCATTAG
rJMSF050M15+          CTCCACTAAGGCTCAAACCTACAACCTCTCGTATGAGAGTCCAACCTTTGGTGCCATTAG
                      ____________________________________________________________
consensus             CTCCACTAAGGCTCAAACCTACAACCTCTCGTATGAGAGTCCAACCTTTGGTGCCATTAG
 
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rJMSF050O19+          ACCACAATATCTTGGCTACAAATATACTTTATTTTGCCCAAAAAAAATGATCAAACGAGT
rJMSF050M15+          ACCACAATATCTTGGCTACAAATATACTTTATTTTGCCCAAAAAAAATGATCAAACGAGT
                      ____________________________________________________________
consensus             ACCACAATATCTTGGCTACAAATATACTTTATTTTGCCCAAAAAAAATGATCAAACGAGT
 
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rJMSF050O19+          ATAATTTCAGTACCTAATAATCACGAGTTCGATTCTTGCAGAAAAGTGTTGGTTCAATGC
rJMSF050M15+          ATAATTTCAGTACCTAATAATCACGAGTTCGATTCTTGCAGAAAAGTGTTGGTTCAATGC
                      ____________________________________________________________
consensus             ATAATTTCAGTACCTAATAATCACGAGTTCGATTCTTGCAGAAAAGTGTTGGTTCAATGC
 
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rJMSF050O19+          AACAAATGCAGCTTTTGGTTGGCCAAAGTTTATAAGCATCGAGGAGTTCCGCAAACCAGA
rJMSF050M15+          AACAAATGCAGCTTTTGGTTGGCCAAAGTTTATAAGCATCGAGGAGTTCCGCAAACCAGA
                      ____________________________________________________________
consensus             AACAAATGCAGCTTTTGGTTGGCCAAAGTTTATAAGCATCGAGGAGTTCCGCAAACCAGA
 
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rJMSF050O19+          ATATGGCTATTTGGTGAACGGAAGCTGCAGAGTAGAAGCTGAGATTAAAGTGCTTGGGAT
rJMSF050M15+          ATATGGCTATTTGGTGAACGGAAGCTGCAGAGTAGAAGCTGAGATTAAAGTGCTTGGGAT
                      ____________________________________________________________
consensus             ATATGGCTATTTGGTGAACGGAAGCTGCAGAGTAGAAGCTGAGATTAAAGTGCTTGGGAT
 
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rJMSF050O19+          GGCTGAACCTGATGCTATGATCTCCAATAATTCAGCCCATGACTGCAAAGAGATCATTTT
rJMSF050M15+          GGCTGAACCTGATGCTATGATCTCCAATAATTCAGCCCATGACTGCAAAGAGATCATTTT
                      ____________________________________________________________
consensus             GGCTGAACCTGATGCTATGATCTCCAATAATTCAGCCCATGACTGCAAAGAGATCATTTT
 
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rJMSF050O19+          AACATGAAACTCCAGATTTTCTATGGTGTTGATCGTCTCTGGTGCTCATAGTATCGGTAT
rJMSF050M15+          AACATGAAACTCCAGATTTTCTATGGTGTTGATCGTCTCTGGTGCTCATAGTATCGGTAT
                      ____________________________________________________________
consensus             AACATGAAACTCCAGATTTTCTATGGTGTTGATCGTCTCTGGTGCTCATAGTATCGGTAT
 
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rJMSF050O19+          AATTATGTATATCATATTTAATTGTATCGAGTATTATTAGTATCAGTGTCAATACCATAT
rJMSF050M15+          AATTATGTATATCATATTTAATTGTATCGAGTATTATTAGTATCAGTGTCAATACCATAT
                      ____________________________________________________________
consensus             AATTATGTATATCATATTTAATTGTATCGAGTATTATTAGTATCAGTGTCAATACCATAT