clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF001O14 | Sequence | 213 | 002047 (4) | 586 | 007248 (4) | ||||||
JMSF008H17 | Sequence | 411 | 002047 (4) | ref|XP_009628293.1| | 1e-30 | PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana tomentosif | 785 | 007248 (4) | ref|XP_009787152.1| | 3e-17 | PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana sylvestris |
JMSF032P09 | Sequence | 645 | 002047 (4) | ref|XP_009628293.1| | 7e-71 | PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana tomentosif | 690 | 007248 (4) | ref|XP_009787152.1| | 2e-06 | PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana sylvestris |
JMSF050M04 | Sequence | 656 | 002047 (4) | ref|XP_009628293.1| | 5e-71 | PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana tomentosif | 705 | 007248 (4) | ref|XP_009787152.1| | 2e-06 | PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana sylvestris |
This contig is upended
. : . : . : . : . : . :
rJMSF008H17+ GACAAGAGAGTTTCCAGC
____________________________________________________________
consensus GACAAGAGAGTTTCCAGC
. : . : . : . : . : . :
rJMSF008H17+ GTGAAGCAGAGGGATATGAGAGGTTAGCTCAAGCCAAGACACTGGGCACCTCCATGGAGT
____________________________________________________________
consensus GTGAAGCAGAGGGATATGAGAGGTTAGCTCAAGCCAAGACACTGGGCACCTCCATGGAGT
. : . : . : . : . : . :
rJMSF032P09+ TTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGG
rJMSF008H17+ TCAAGAAGAATAATTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGG
rJMSF050M04+ TTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGG
____________________________________________________________
consensus TCAAGAAGAATAATTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGG
. : . : . : . : . : . :
rJMSF032P09+ AGGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTG
rJMSF008H17+ AGGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTG
rJMSF050M04+ AGGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTG
____________________________________________________________
consensus AGGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTG
. : . : . : . : . : . :
rJMSF032P09+ CTATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCT
rJMSF001O14+ CTATGAGCAATGGTGATGATTCCTTTTGACATGTTCGCAGAAGATGATGAAAACCCTCCT
rJMSF008H17+ CTATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCT
rJMSF050M04+ CTATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCT
____________________________________________________________
consensus CTATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCT
. : . : . : . : . : . :
rJMSF032P09+ ACCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCT
rJMSF001O14+ ACCAATCCTACCTCAAGTGAGGGTACTCTGCAAAANGACTATGTATATGATGAGTCATCT
rJMSF008H17+ ACCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCT
rJMSF050M04+ ACCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCT
____________________________________________________________
consensus ACCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCT
. : . : . : . : . : . :
rJMSF032P09+ GGCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGC
rJMSF001O14+ GGCTATTACTATAGCAGCAGTTTGGGNTACTATTACGATCCATCATCGGGACTGTACTGC
rJMSF008H17+ GGCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGC
rJMSF050M04+ GGCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGC
____________________________________________________________
consensus GGCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGC
. : . : . : . : . : . :
rJMSF032P09+ AACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTT
rJMSF001O14+ AACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTT
rJMSF008H17+ AACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTT
rJMSF050M04+ AACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTT
____________________________________________________________
consensus AACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTT
. : . : . : . : . : . :
rJMSF032P09+ CCGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAG
rJMSF001O14+ CCGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAG
rJMSF008H17+ CCGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAG
rJMSF050M04+ CCGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAG
____________________________________________________________
consensus CCGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAG
. : . : . : . : . : . :
rJMSF032P09+ AAAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTC
rJMSF001O14+ AAAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTC
rJMSF008H17+ AAAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTC
rJMSF050M04+ AAAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTC
____________________________________________________________
consensus AAAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTC
. : . : . : . : . : . :
rJMSF032P09+ CTCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTAC
rJMSF001O14+ CTCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTAC
rJMSF008H17+ CTCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTAC
rJMSF050M04+ CTCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTAC
____________________________________________________________
consensus CTCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTAC
. : . : . : . : . : . :
rJMSF032P09+ TTTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACA
rJMSF001O14+ TTTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACA
rJMSF008H17+ TTTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACA
rJMSF050M04+ TTTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACA
____________________________________________________________
consensus TTTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACA
. : . : . : . : . : . :
rJMSF032P09+ CTTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-
rJMSF001O14+ CTTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGAC
rJMSF008H17+ CTTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-
rJMSF050M04+ CTTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-
____________________________________________________________
consensus CTTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-
. : . : . : . : . : . :
rJMSF032P09+ GGTGGTTCATTTGTCTCCTTGTC
rJMSF001O14+ GGTGGTTCATTTGTCTCCTTGT-CAGAGTAG
rJMSF008H17+ GGTGGTTCATTTGTCTCCTTGT-CAGAGTAG
rJMSF050M04+ GGTGGTTCATTTGTCTCCTTGTCCAGAGTAGTGGTGTTGTATCCCCTATGTTATCTAGCC
____________________________________________________________
consensus GGTGGTTCATTTGTCTCCTTGTCCAGAGTAGTGGTGTTGTATCCCCTATGTTATCTAGCC