Contig 007248:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001O14Sequence213002047 (4)586007248 (4)
JMSF008H17Sequence411002047 (4)ref|XP_009628293.1|1e-30PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana tomentosif785007248 (4)ref|XP_009787152.1|3e-17PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana sylvestris
JMSF032P09Sequence645002047 (4)ref|XP_009628293.1|7e-71PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana tomentosif690007248 (4)ref|XP_009787152.1|2e-06PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana sylvestris
JMSF050M04Sequence656002047 (4)ref|XP_009628293.1|5e-71PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana tomentosif705007248 (4)ref|XP_009787152.1|2e-06PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana sylvestris

Alignment

This contig is upended


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rJMSF008H17+                                                    GACAAGAGAGTTTCCAGC
                      ____________________________________________________________
consensus                                                       GACAAGAGAGTTTCCAGC
 
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rJMSF008H17+          GTGAAGCAGAGGGATATGAGAGGTTAGCTCAAGCCAAGACACTGGGCACCTCCATGGAGT
                      ____________________________________________________________
consensus             GTGAAGCAGAGGGATATGAGAGGTTAGCTCAAGCCAAGACACTGGGCACCTCCATGGAGT
 
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rJMSF032P09+                       TTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGG
rJMSF008H17+          TCAAGAAGAATAATTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGG
rJMSF050M04+                       TTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGG
                      ____________________________________________________________
consensus             TCAAGAAGAATAATTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGG
 
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rJMSF032P09+          AGGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTG
rJMSF008H17+          AGGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTG
rJMSF050M04+          AGGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTG
                      ____________________________________________________________
consensus             AGGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTG
 
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rJMSF032P09+          CTATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCT
rJMSF001O14+          CTATGAGCAATGGTGATGATTCCTTTTGACATGTTCGCAGAAGATGATGAAAACCCTCCT
rJMSF008H17+          CTATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCT
rJMSF050M04+          CTATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCT
                      ____________________________________________________________
consensus             CTATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCT
 
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rJMSF032P09+          ACCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCT
rJMSF001O14+          ACCAATCCTACCTCAAGTGAGGGTACTCTGCAAAANGACTATGTATATGATGAGTCATCT
rJMSF008H17+          ACCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCT
rJMSF050M04+          ACCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCT
                      ____________________________________________________________
consensus             ACCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCT
 
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rJMSF032P09+          GGCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGC
rJMSF001O14+          GGCTATTACTATAGCAGCAGTTTGGGNTACTATTACGATCCATCATCGGGACTGTACTGC
rJMSF008H17+          GGCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGC
rJMSF050M04+          GGCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGC
                      ____________________________________________________________
consensus             GGCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGC
 
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rJMSF032P09+          AACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTT
rJMSF001O14+          AACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTT
rJMSF008H17+          AACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTT
rJMSF050M04+          AACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTT
                      ____________________________________________________________
consensus             AACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTT
 
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rJMSF032P09+          CCGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAG
rJMSF001O14+          CCGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAG
rJMSF008H17+          CCGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAG
rJMSF050M04+          CCGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAG
                      ____________________________________________________________
consensus             CCGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAG
 
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rJMSF032P09+          AAAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTC
rJMSF001O14+          AAAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTC
rJMSF008H17+          AAAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTC
rJMSF050M04+          AAAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTC
                      ____________________________________________________________
consensus             AAAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTC
 
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rJMSF032P09+          CTCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTAC
rJMSF001O14+          CTCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTAC
rJMSF008H17+          CTCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTAC
rJMSF050M04+          CTCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTAC
                      ____________________________________________________________
consensus             CTCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTAC
 
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rJMSF032P09+          TTTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACA
rJMSF001O14+          TTTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACA
rJMSF008H17+          TTTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACA
rJMSF050M04+          TTTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACA
                      ____________________________________________________________
consensus             TTTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACA
 
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rJMSF032P09+          CTTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-
rJMSF001O14+          CTTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGAC
rJMSF008H17+          CTTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-
rJMSF050M04+          CTTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-
                      ____________________________________________________________
consensus             CTTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-
 
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rJMSF032P09+          GGTGGTTCATTTGTCTCCTTGTC                                     
rJMSF001O14+          GGTGGTTCATTTGTCTCCTTGT-CAGAGTAG                             
rJMSF008H17+          GGTGGTTCATTTGTCTCCTTGT-CAGAGTAG                             
rJMSF050M04+          GGTGGTTCATTTGTCTCCTTGTCCAGAGTAGTGGTGTTGTATCCCCTATGTTATCTAGCC
                      ____________________________________________________________
consensus             GGTGGTTCATTTGTCTCCTTGTCCAGAGTAGTGGTGTTGTATCCCCTATGTTATCTAGCC