Contig 007245:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035J17Sequence551007245 (4)ref|XP_006387666.1|3e-42hypothetical protein POPTR_0701s00010g [Populus trichocarpa] gb|ERP46580.1| hypo638007245 (4)ref|XP_006387666.1|8e-42hypothetical protein POPTR_0701s00010g [Populus trichocarpa] gb|ERP46580.1| hypo
JMSF041B19Sequence644002394 (6)ref|XP_009792005.1|2e-18PREDICTED: potassium transporter 7-like isoform X1 [Nicotiana sylvestris]655007245 (4)ref|XP_006387666.1|2e-43hypothetical protein POPTR_0701s00010g [Populus trichocarpa] gb|ERP46580.1| hypo
JMSF050I15Sequence674002394 (6)ref|XP_009792005.1|2e-39PREDICTED: potassium transporter 7-like isoform X1 [Nicotiana sylvestris]754007245 (4)ref|XP_009619127.1|2e-57PREDICTED: potassium transporter 7-like isoform X2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF050I15+                                   TGAAGAAGAGAACACCTTTTCAAGGGTCCTTGTAG
                      ____________________________________________________________
consensus                                      TGAAGAAGAGAACACCTTTTCAAGGGTCCTTGTAG
 
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rJMFF035J17+                                                                ACAAGG
rJMSF041B19+                                               CTTGGCTGATTTTGAAGACAAGG
JMFF035J17-                                                                 ACAAGG
rJMSF050I15+          CCCCCAATGGCAGTGTATATTCACTTGCAGTGCCTCTCTTGGCTGATTTTGAAGACAAGG
                      ____________________________________________________________
consensus             CCCCCAATGGCAGTGTATATTCACTTGCAGTGCCTCTCTTGGCTGATTTTGAAGACAAGG
 
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rJMFF035J17+          GGAAGCTGGTTGTTGAAGAGAGCACCTCAAGTGATCCTAACTTCTTTGATGCTGAGCAGA
rJMSF041B19+          GGAAGCTGGTTGTTGAAGAGAGCACCTCAAGTGATCCTAACTTCTTTGATGCTGAGCAGA
JMFF035J17-           GGAAGCTGGTTGTTGAAGAGAGCACCTCAAGTGATCCTAACTTCTTTGATGCTGAGCAGA
rJMSF050I15+          GGAAGCTGGTTGTTGAAGAGAGCACCTCAAGTGATCCTAACTTCTTTGATGCTGAGCAGA
                      ____________________________________________________________
consensus             GGAAGCTGGTTGTTGAAGAGAGCACCTCAAGTGATCCTAACTTCTTTGATGCTGAGCAGA
 
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rJMFF035J17+          GTCTTGAAAAGGAACTCTCCTTCCTACGCACAGCCAAAGAATCCGGTGTAGTTTACCTTC
rJMSF041B19+          GTCTTGAAAAGGAACTCTCCTTCCTACGCACAGCCAAAGAATCCGGTGTAGTTTACCTTC
JMFF035J17-           GTCTTGAAAAGGAACTCTCCTTCCTACGCACAGCCAAAGAATCCGGTGTAGTTTACCTTC
rJMSF050I15+          GTCTTGAAAAGGAACTCTCCTTCCTACGCACAGCCAAAGAATCCGGTGTAGTTTACCTTC
                      ____________________________________________________________
consensus             GTCTTGAAAAGGAACTCTCCTTCCTACGCACAGCCAAAGAATCCGGTGTAGTTTACCTTC
 
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rJMFF035J17+          TTGGTCATGGAGACATTCGGGCAAGGAAGGATTCCTGGTTCCTCAAGAAGCTTATCATAA
rJMSF041B19+          TTGGTCATGGAGACATTCGGGCAAGGAAGGATTCCTGGTTCCTCAAGAAGCTTATCATAA
JMFF035J17-           TTGGTCATGGAGACATTCGGGCAAGGAAGGATTCCTGGTTCCTCAAGAAGCTTATCATAA
rJMSF050I15+          TTGGTCATGGAGACATTCGGGCAAGGAAGGATTCCTGGTTCCTCAAGAAGCTTATCATAA
                      ____________________________________________________________
consensus             TTGGTCATGGAGACATTCGGGCAAGGAAGGATTCCTGGTTCCTCAAGAAGCTTATCATAA
 
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rJMFF035J17+          ATTATCTATATGCCTTCCTGAAAAAGAACTCTAGGAGGGGAATATCCAATTTGAGCGTGC
rJMSF041B19+          ATTATCTATATGCCTTCCTGAAAAAGAACTCTAGGAGGGGAATATCCAATTTGAGCGTGC
JMFF035J17-           ATTATCTATATGCCTTCCTGAAAAAGAACTCTAGGAGGGGAATATCCAATTTGAGCGTGC
rJMSF050I15+          ATTATCTATATGCCTTCCTGAAAAAGAACTCTAGGAGGGGAATATCCAATTTGAGCGTGC
                      ____________________________________________________________
consensus             ATTATCTATATGCCTTCCTGAAAAAGAACTCTAGGAGGGGAATATCCAATTTGAGCGTGC
 
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rJMFF035J17+          CCCATTCGCACGTAATCCAGGTTGGTATGACTTACATGGTGTAAAAATTGGCTGCTGCAA
rJMSF041B19+          CCCATTCGCACGTAATCCAGGTTGGTATGACTTACATGGTGTAAAAATTGGCTGCTGCAA
JMFF035J17-           CCCATTCGCACGTAATCCAGGTTGGTATGACTTACATGGTGTAAAAATTGGCTGCTGCAA
rJMSF050I15+          CCCATTCGCACGTAATCCAGGTTGGTATGACTTACATGGTGTAAAAATTGGCTGCTGCAA
                      ____________________________________________________________
consensus             CCCATTCGCACGTAATCCAGGTTGGTATGACTTACATGGTGTAAAAATTGGCTGCTGCAA
 
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rJMFF035J17+          TGGAAAGAGGTCACATGTTAATTCAGTTTGGCCAGAGCTCCTCGTTATTCTGGCCTCTTC
rJMSF041B19+          TGGAAAGAGGTCACATGTTAATTCAGTTTGGCCAGAGCTCCTCGTTATTCTGGCCTCTTC
JMFF035J17-           TGGAAAGAGGTCACATGTTAATTCAGTTTGGCCAGAGCTCCTCGTTATTCTGGCCTCTTC
rJMSF050I15+          TGGAAAGAGGTCACATGTTAATTCAGTTTGGCCAGAGCTCCTCGTTATTCTGGCCTCTTC
                      ____________________________________________________________
consensus             TGGAAAGAGGTCACATGTTAATTCAGTTTGGCCAGAGCTCCTCGTTATTCTGGCCTCTTC
 
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rJMFF035J17+          TCCAACAGAATGCAAATCTAATTGATGAACGCGGATAGACAAACCATTTCCAGTTGCCAA
rJMSF041B19+          TCCAACAGAATGCAAATCTAATTGATGAATGCGGATAGACAAACCATTTCCAGTTGCCAA
JMFF035J17-           TCCAACAGAATGCAAATCTAATTGATGAACGCGGATAGACAAACCATTTCCAGTTGCCAA
rJMSF050I15+          TCCAACAGAATGCAAATCTAATTGATGAATGCGGATAGACAAACCATTTCCAGTTGCCAA
                      ____________________________________________________________
consensus             TCCAACAGAATGCAAATCTAATTGATGAACGCGGATAGACAAACCATTTCCAGTTGCCAA
 
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rJMFF035J17+          AGCACAATTTTGAAGATCCCTCGTTATCTTTACTAGGGTCTA-GGGGGATTTGGCTGTTC
rJMSF041B19+          AGCACAATTTTGAAGATCCCTCGTTATCTTTACTAGGGTCTA-GGGGGATTTGGCTGTTC
JMFF035J17-           AGCACAATTTTGAAGATCCCTCGTTATCTTTACTAGGGTCTAGGGGGGATTTGGCTGTTC
rJMSF050I15+          AGCACAATTTTGAAGATCCCTCGTTATCTTTACTAGGGTCTA-GGGGGATTTGGCTGTTC
                      ____________________________________________________________
consensus             AGCACAATTTTGAAGATCCCTCGTTATCTTTACTAGGGTCTA-GGGGGATTTGGCTGTTC
 
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rJMFF035J17+          TCATTTGGGTTTCTTGATTTTACGGTGATTTGAAGGTTGCGTGCCCTTGCTTTTGTTTTA
rJMSF041B19+          TCATTTGGGTTTCTTGATTTTACGGTGATTTGAAGGTTGCGTGCCCTTGCTTTTGTTTTA
JMFF035J17-           TCATTTGGGTTTCTTGATTTTACGGTGATTTGAAGGTTGCGTGCCCTTGCTTTTGTTTTA
rJMSF050I15+          TCATTTGGGTTTCTTGATTTTACGGTGATTTGAAGGTTGCGTGCCCTTGCTTTTGTTTTA
                      ____________________________________________________________
consensus             TCATTTGGGTTTCTTGATTTTACGGTGATTTGAAGGTTGCGTGCCCTTGCTTTTGTTTTA
 
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rJMFF035J17+          TCAAGGCGACTAGGCCCTGCTTGTATGATGATGATTGAATGTTAACAATATTGCTGTCC 
rJMSF041B19+          TCAAGGCGACTAGGCCCTGCTTGTATGATGATGATTGAATGTTAACAATATTGTTGTCC 
JMFF035J17-           TCAAG                                                       
rJMSF050I15+          TCAAGGCGACTAGGCCCTGCTTGTATGATGATGATTGAATGTTAACAATATTGTTGTCCA
                      ____________________________________________________________
consensus             TCAAGGCGACTAGGCCCTGCTTGTATGATGATGATTGAATGTTAACAATATTGTTGTCCA
 
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rJMSF050I15+          CTAAATTTTTTTATCTGTATACTATGCAGAATTTTGACTTTTTAATGATATGATGGAATT
                      ____________________________________________________________
consensus             CTAAATTTTTTTATCTGTATACTATGCAGAATTTTGACTTTTTAATGATATGATGGAATT