Contig 007244:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044I19Sequence702003903 (2)ref|XP_004251591.1|2e-58PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic [Solanum 766007244 (2)emb|CDP20806.1|1e-91unnamed protein product [Coffea canephora]
JMSF050H14Sequence663003903 (2)ref|XP_004251591.1|1e-50PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic [Solanum 771007244 (2)emb|CDP20806.1|2e-95unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF044I19+                                     TTGTGGGTGATGATGAACAAAGAAACANGGAGA
rJMSF050H14+                   TTAATGCGAGCTTCCAGCTTGTGGGTGATGATGAACAAAGAAACAAGGAGA
                      ____________________________________________________________
consensus                      TTAATGCGAGCTTCCAGCTTGTGGGTGATGATGAACAAAGAAACAAGGAGA
 
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rJMSF044I19+          TTGGCAAAAATGCCAGATGAGGTCCGAGCTGAAATTGGAAGCTATTTTGTTGATACACCA
rJMSF050H14+          TTGGCAAAAATGCCAGATGAGGTCCGAGCTGAAATTGGAAGCTATTTTGTTGATACACCA
                      ____________________________________________________________
consensus             TTGGCAAAAATGCCAGATGAGGTCCGAGCTGAAATTGGAAGCTATTTTGTTGATACACCA
 
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rJMSF044I19+          CCTATTATTGATGATGACAGTAGGAAGTTACCGAAGCTTGATGATGAGACAGCACAATAC
rJMSF050H14+          CCTATTATTGATGATGACAGTAGGAAGTTACCGAAGCTTGATGATGAGACAGCACAATAC
                      ____________________________________________________________
consensus             CCTATTATTGATGATGACAGTAGGAAGTTACCGAAGCTTGATGATGAGACAGCACAATAC
 
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rJMSF044I19+          ATTCGCAGTGGCTTAACTCCAAGGTGGAGTGACTTAGATGTGAATCAACATGTTAATAAT
rJMSF050H14+          ATTCGCAGTGGCTTAACTCCAAGGTGGAGTGACTTAGATGTGAATCAACATGTTAATAAT
                      ____________________________________________________________
consensus             ATTCGCAGTGGCTTAACTCCAAGGTGGAGTGACTTAGATGTGAATCAACATGTTAATAAT
 
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rJMSF044I19+          GTTAAATATATTGGCTGGATCCTCGAGAGTGCGCCCTTACCAATCTTGGAGAGTCATGAG
rJMSF050H14+          GTTAAATATATTGGCTGGATCCTCGAGAGTGCGCCCTTACCAATCTTGGAGAGTCATGAG
                      ____________________________________________________________
consensus             GTTAAATATATTGGCTGGATCCTCGAGAGTGCGCCCTTACCAATCTTGGAGAGTCATGAG
 
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rJMSF044I19+          TTAGCAGGCATGACTTTGGAGTACAGGAGGGAGTGTAGGAGGGACAGCGTGGTGCAATCG
rJMSF050H14+          TTAGCAGGCATGACTTTGGAGTACAGGAGGGAGTGTAGGAGGGACAGCGTGGTGCAATCG
                      ____________________________________________________________
consensus             TTAGCAGGCATGACTTTGGAGTACAGGAGGGAGTGTAGGAGGGACAGCGTGGTGCAATCG
 
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rJMSF044I19+          CTCACCTCAGTCGTGGGCAACGATATTGGGGGCATGGCTACCTCGGGATCTGTTGAGTGC
rJMSF050H14+          CTCACCTCAGTCGTGGGCAACGATATTGGGGGCATGGCTACCTCGGGATCTGTTGAGTGC
                      ____________________________________________________________
consensus             CTCACCTCAGTCGTGGGCAACGATATTGGGGGCATGGCTACCTCGGGATCTGTTGAGTGC
 
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rJMSF044I19+          CAACATTTGGTTCGCCTCGAGAGTGGTGCTGAAATTGTCAAGGGAAGGACCGAGTGGAGG
rJMSF050H14+          CAACATTTGGTTCGCCTCGAGAGTGGTGCTGAAATTGTCAAGGGAAGGACCGAGTGGAGG
                      ____________________________________________________________
consensus             CAACATTTGGTTCGCCTCGAGAGTGGTGCTGAAATTGTCAAGGGAAGGACCGAGTGGAGG
 
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rJMSF044I19+          CCGAAATCCCCAAACAGTTTCGGGAGCATAGATCAGCTCCCAGCCGAAAGCGCCTAATCC
rJMSF050H14+          CCGAAATCCCCAAACAGTTTCGGGAGCATAGATCAGCTCCCAGCCGAAAGCGCCTAATCC
                      ____________________________________________________________
consensus             CCGAAATCCCCAAACAGTTTCGGGAGCATAGATCAGCTCCCAGCCGAAAGCGCCTAATCC
 
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rJMSF044I19+          TACTGCCTTCAGATCAAGAATTGAAGTGATCCTTGCACCATCTCAACAGATCCCATGTAG
rJMSF050H14+          TACTGCCTTCAGATCAAGAATTGAAGTGATCCTTGCACCATCTCAACAGATCCCATGTAG
                      ____________________________________________________________
consensus             TACTGCCTTCAGATCAAGAATTGAAGTGATCCTTGCACCATCTCAACAGATCCCATGTAG
 
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rJMSF044I19+          AATTCTTCACTTTCATTGATCTATATGTTTCCTACCCTATATATATAATATATATACATA
rJMSF050H14+          AATTCTTCACTTTCATTGATCTATATGTTTCCTACCCTATATATATAATATATATACATA
                      ____________________________________________________________
consensus             AATTCTTCACTTTCATTGATCTATATGTTTCCTACCCTATATATATAATATATATACATA
 
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rJMSF044I19+          TATTCTACTTCTTTTTTGTTTTGCTTTTATGATTTTCTTGGAGAACAATCATTGTAAGTA
rJMSF050H14+          TATTCTACTTCTTTTTTGTTTTGCTTTTATGATTTTCTTGGAGAACAATCATTGTAAGTA
                      ____________________________________________________________
consensus             TATTCTACTTCTTTTTTGTTTTGCTTTTATGATTTTCTTGGAGAACAATCATTGTAAGTA
 
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rJMSF044I19+          GTCCTTGCCCCTCTTTCCACTTTCTTTTTGGTCTGTCCGTCTAAGCTGCCAC        
rJMSF050H14+          GTCCTTGCACCTCTTTCCACTTTCTTTTTGGTCTGTCCGTCTAAGCTGCCACTGAAGCTT
                      ____________________________________________________________
consensus             GTCCTTGCCCCTCTTTCCACTTTCTTTTTGGTCTGTCCGTCTAAGCTGCCACTGAAGCTT