| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF009H02 | Sequence | 391 | 000993 (5) | 758 | 007240 (4) | ref|XP_011079495.1| | 1e-82 | PREDICTED: uncharacterized protein LOC105163000 isoform X1 [Sesamum indicum] | |||
| JMSF030B15 | Sequence | 712 | 000993 (5) | ref|XP_009773072.1| | 2e-20 | PREDICTED: uncharacterized protein LOC104223345 isoform X2 [Nicotiana sylvestri | 757 | 007240 (4) | ref|XP_011079495.1| | 5e-83 | PREDICTED: uncharacterized protein LOC105163000 isoform X1 [Sesamum indicum] |
| JMSF039H02 | Sequence | 665 | 000993 (5) | gb|ABN08058.1| | 7e-07 | RNA-directed DNA polymerase , related [Medicago truncatula] | 801 | 007240 (4) | ref|XP_011079495.1| | 5e-52 | PREDICTED: uncharacterized protein LOC105163000 isoform X1 [Sesamum indicum] |
| JMSF049O12 | Sequence | 666 | 000993 (5) | gb|ABN08058.1| | 7e-07 | RNA-directed DNA polymerase , related [Medicago truncatula] | 718 | 007240 (4) | ref|XP_011079495.1| | 2e-52 | PREDICTED: uncharacterized protein LOC105163000 isoform X1 [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF039H02+ CTTAGAGCATTATAGCCCGTCAGGGATCGATCATTAGCC
____________________________________________________________
consensus CTTAGAGCATTATAGCCCGTCAGGGATCGATCATTAGCC
. : . : . : . : . : . :
rJMSF039H02+ TGGAGCAGCCTAAAATCTCTTAGCCAGCTGAGCTGTCACACCCTTTATAGGTGTCTACAA
____________________________________________________________
consensus TGGAGCAGCCTAAAATCTCTTAGCCAGCTGAGCTGTCACACCCTTTATAGGTGTCTACAA
. : . : . : . : . : . :
rJMSF039H02+ TTCTGCGAGGGGATTAGTCACTGTGTCTATGGTGGATACCCGAGTTACACCCAAAAAAAT
____________________________________________________________
consensus TTCTGCGAGGGGATTAGTCACTGTGTCTATGGTGGATACCCGAGTTACACCCAAAAAAAT
. : . : . : . : . : . :
rJMSF039H02+ TACTGGGAAGGATTTGATGCCTTCTGGAGTACTTGTCCATACTGTTCTCGAGAGTAATCA
____________________________________________________________
consensus TACTGGGAAGGATTTGATGCCTTCTGGAGTACTTGTCCATACTGTTCTCGAGAGTAATCA
. : . : . : . : . : . :
rJMSF009H02+ GCTAATTGGAT
rJMSF039H02+ CATTTCTGCAATTCTAATCATTTGCTATTTCTTTTAAATAATTTTGGCAGCTAATTGGAT
rJMSF030B15+ GCTAATTGGAT
rJMSF049O12+ GCTAATTGGAT
____________________________________________________________
consensus CATTTCTGCAATTCTAATCATTTGCTATTTCTTTTAAATAATTTTGGCAGCTAATTGGAT
. : . : . : . : . : . :
rJMSF009H02+ GTATGCACTCTGTAAATGCCATTTTCCTTTTCCTTGATTCTGCTCTAAATAAGCTTCCAT
rJMSF039H02+ GTATGCACTCTGTAAATGCCATTTTCCTTTTCCTTGATTCTGCTCTAAATAAGCTTCCAT
rJMSF030B15+ GTATGCACTCTGTAAATGCCATTTTCCTTTTCCTTGATTCTGCTCTAAATAAGCTTCCAT
rJMSF049O12+ GTATGCACTCTGTAAATGCCATTTTCCTTTTCCTTGATTCTGCTCTAAATAAGCTTCCAT
____________________________________________________________
consensus GTATGCACTCTGTAAATGCCATTTTCCTTTTCCTTGATTCTGCTCTAAATAAGCTTCCAT
. : . : . : . : . : . :
rJMSF009H02+ TTTCATGGTACGGCTTCGTATACTTTATTCTATGGGGTTGTGCTTATGTTGCTTTCCAGT
rJMSF039H02+ TTTCATGGTACGGCTTCGTATACTTTATTCTATGGGGTTGTGCTTATGTTGCTTTCCAGT
rJMSF030B15+ TTTCATGGTACGGCTTCGTATACTTTATTCTATGGGGTTGTGCTTATGTTGCTTTCCAGT
rJMSF049O12+ TTTCATGGTACGGCTTCGTATACTTTATTCTATGGGGTTGTGCTTATGTTGCTTTCCAGT
____________________________________________________________
consensus TTTCATGGTACGGCTTCGTATACTTTATTCTATGGGGTTGTGCTTATGTTGCTTTCCAGT
. : . : . : . : . : . :
rJMSF009H02+ GGATTCTCCACGCGTGCTGCTATACATGGTGGCCATATCCTTTCCTTGACCTTTCAACTC
rJMSF039H02+ GGATTCTCCACGCGTGCTGCTATACATGGTGGCCATATCCTTTCCTTGACCTTTCAACTC
rJMSF030B15+ GGATTCTCCACGCGTGCTGCTATACATGGTGGCCATATCCTTTCCTTGACCTTTCAACTC
rJMSF049O12+ GGATTCTCCACGCGTGCTGCTATACATGGTGGCCATATCCTTTCCTTGACCTTTCAACTC
____________________________________________________________
consensus GGATTCTCCACGCGTGCTGCTATACATGGTGGCCATATCCTTTCCTTGACCTTTCAACTC
. : . : . : . : . : . :
rJMSF009H02+ CATGGGCACCTTTATGGTATTTTGCACTGGCCTTGGTTCACGTCCCCTGCTATGGAATAT
rJMSF039H02+ CATGGGCACCTTTATGGTATTTTGCACTGGCCTTGGTTCACGTCCCCTGCTATGGAATAT
rJMSF030B15+ CATGGGCACCTTTATGGTATTTTGCACTGGCCTTGGTTCACGTCCCCTGCTATGGAATAT
rJMSF049O12+ CATGGGCACCTTTATGGTATTTTGCACTGGCCTTGGTTCACGTCCCCTGCTATGGAATAT
____________________________________________________________
consensus CATGGGCACCTTTATGGTATTTTGCACTGGCCTTGGTTCACGTCCCCTGCTATGGAATAT
. : . : . : . : . : . :
rJMSF009H02+ ACGTTCTGCTCATAAAATTAAAAGACGGAATCTTGTCAAGGATGTTTGCTGAGGCTTATG
rJMSF039H02+ ACGTTCTGCTCATAAAATTAAAAGACGGAATCTTGTCAAGGATGTTTGCTGAGGCTTATG
rJMSF030B15+ ACGTTCTGCTCATAAAATTAAAAGACGGAATCTTGTCAAGGATGTTTGCTGAGGCTTATG
rJMSF049O12+ ACGTTCTGCTCATAAAATTAAAAGACGGAATCTTGTCAAGGATGTTTGCTGAGGCTTATG
____________________________________________________________
consensus ACGTTCTGCTCATAAAATTAAAAGACGGAATCTTGTCAAGGATGTTTGCTGAGGCTTATG
. : . : . : . : . : . :
rJMSF009H02+ TTAGGGTTACAATGGAGAAGAAGGGAACTTGACACAGAAGAAATCTGTTTCCAGAAAGAA
rJMSF039H02+ TTAGGGTTACAATGGAGAAGAAGGGAACTTGACACAGAAGAAATCTGTTTCCAGAAAGAA
rJMSF030B15+ TTAGGGTTACAATGGAGAAGAAGGGAACTTGACACAGAAGAAATCTGTTTCCAGAAAGAA
rJMSF049O12+ TTAGGGTTACAATGGAGAAGAAGGGAACTTGACACAGAAGAAATCTGTTTCCAGAAAGAA
____________________________________________________________
consensus TTAGGGTTACAATGGAGAAGAAGGGAACTTGACACAGAAGAAATCTGTTTCCAGAAAGAA
. : . : . : . : . : . :
rJMSF009H02+ AAGAGTGGATCCTATCTACTTGCATATAAGAAAAGAAGATAGATTTAGACATTGGTACCT
rJMSF039H02+ AAGAGTGGATCCTATCTACTTGCATATAAGAAAAGAAGATAGATTTAGACATTGGTACCT
rJMSF030B15+ AAGAGTGGATCCTATCTACTTGCATATAAGAAAAGAAGATAGATTTAGACATTGGTACCT
rJMSF049O12+ AAGAGTGGATCCTATCTACTTGCATATAAGAAAAGAAGATAGATTTAGACATTGGTACCT
____________________________________________________________
consensus AAGAGTGGATCCTATCTACTTGCATATAAGAAAAGAAGATAGATTTAGACATTGGTACCT
. : . : . : . : . : . :
rJMSF009H02+ ATCAATATCTGCATCTTATGCATGTGCTCTAGGCCTCTAGCTACTAGTTCCTGCTGTACA
rJMSF039H02+ ATCAATATCTGCATCTTATGCATGTGCTCTAGGCCTCTAGCTACTAGTTCCTGCTGTACA
rJMSF030B15+ ATCAATATCTGCATCTTATGCATGTGCTCTAGGCCTCTAGCTACTAGTTCCTGCTGTACA
rJMSF049O12+ ATCAATATCTGCATCTTATGCATGTGCTCTAGGCCTCTAGCTACTAGTTCCTGCTGTACA
____________________________________________________________
consensus ATCAATATCTGCATCTTATGCATGTGCTCTAGGCCTCTAGCTACTAGTTCCTGCTGTACA
. : . : . : . : . : . :
rJMSF009H02+ CTCTGTAGGAAATTGTTCATTTTAGTGTATGCATTATTAAT
rJMSF039H02+ CTCTGTAGAAAATTGTTCATTTTAGTGTATGCATTATTAAT
rJMSF030B15+ CTCTGTAGAAAATTGTTCATTTTAGTGTATGCATTATTAAT
rJMSF049O12+ CTCTGTAGAAAATTGTTCATTTTAGTGTATGCATTATTAATTTAATCCTGAATGTAAAGA
____________________________________________________________
consensus CTCTGTAGAAAATTGTTCATTTTAGTGTATGCATTATTAATTTAATCCTGAATGTAAAGA