Contig 007238:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024M17Sequence680010918 (6)emb|CDP03128.1|7e-71unnamed protein product [Coffea canephora]760007238 (4)ref|XP_009622981.1|3e-62PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif
JMSF047J19Sequence705010918 (6)emb|CDP03128.1|8e-86unnamed protein product [Coffea canephora]823007238 (4)ref|XP_009622981.1|2e-104PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif
JMSF049J23Sequence670010918 (6)ref|XP_009603743.1|8e-61PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif731007238 (4)ref|XP_009622981.1|4e-70PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif
JMSF050I18Sequence711010918 (6)ref|XP_009603743.1|8e-121PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif722007238 (4)ref|XP_009622981.1|8e-86PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif

Alignment

This contig is upended


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rJMSF047J19+                TNTGCAAGCAGGTACTCAAGGGCTTGTGGTATCTCCACCATGAAAAACATATCA
                      ____________________________________________________________
consensus                   TNTGCAAGCAGGTACTCAAGGGCTTGTGGTATCTCCACCATGAAAAACATATCA
 
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rJMSF047J19+          TTCACAGAGACTGGAGCCTTCAAATTTNGCTGATAAACCATAGAGGTGATGTCAAGATAA
                      ____________________________________________________________
consensus             TTCACAGAGACTGGAGCCTTCAAATTTNGCTGATAAACCATAGAGGTGATGTCAAGATAA
 
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rJMSF047J19+          CCGATTTCGGTGTTAGTGTTGTACTAACAAGCACATCTGGAGCGGCCAATACCTTTGTTG
                      ____________________________________________________________
consensus             CCGATTTCGGTGTTAGTGTTGTACTAACAAGCACATCTGGAGCGGCCAATACCTTTGTTG
 
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rJMSF050I18+                                          GAAGGAGGGAGCCACGGGTATAGAAGTG
rJMSF024M17+                                          GAAGGAGGCAGCCACGGGTATAGAAGTG
rJMSF047J19+          GCACCTACAATTATATGTCTCCGGAGAGGATTGAAGGAGGGAGCCACGGGTATAGAAGTG
rJMSF049J23+                                          GAAGGAGGGAGCCACGGGTATAGAAGTG
                      ____________________________________________________________
consensus             GCACCTACAATTATATGTCTCCGGAGAGGATTGAAGGAGGGAGCCACGGGTATAGAAGTG
 
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rJMSF050I18+          ATATCTGGAGCTTGGGTTTAGTTCTGCTCGAGTGTGCAACAGGTGATTTCCCGTATACCC
rJMSF024M17+          ATATCTGGAGCTTGGGTTTAGTTCTGCTCGAGTGTGCAACGGGTGATTTCCCATATACCC
rJMSF047J19+          ATATCTGGAGCTTGGGTTTAGTTCTGCTCGAGTGTGCAACAGGTGATTTCCCGTATACCC
rJMSF049J23+          ATATCTGGAGCTTGGGTTTAGTTCTGCTCGAGTGTGCAACAGGTGATTTCCCGTATACCC
                      ____________________________________________________________
consensus             ATATCTGGAGCTTGGGTTTAGTTCTGCTCGAGTGTGCAACAGGTGATTTCCCGTATACCC
 
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rJMSF050I18+          CACCACGACCAGAGGAAGGATGGGATAATGTTTATGAGCTTATGGAAACCATAGTTGATC
rJMSF024M17+          CACCACGACCGGAGGAAGGATGGGATAATGTTTACGAGCTTATGGAAACCATAGTTGATC
rJMSF047J19+          CACCACGACCAGAGGAAGGATGGGATAATGTTTATGAGCTTATGGAAACCATAGTTGATC
rJMSF049J23+          CACCACGACCAGAGGAAGGATGGGATAATGTTTATGAGCTTATGGAAACCATAGTTGATC
                      ____________________________________________________________
consensus             CACCACGACCAGAGGAAGGATGGGATAATGTTTATGAGCTTATGGAAACCATAGTTGATC
 
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rJMSF050I18+          AACCCGAGCCTTATGCACCTCCCGATCAATTCTCTCCAGAGTTCTGTTCTTTCATCTCTA
rJMSF024M17+          AACCAGAGCCTTGCGCACCTCCAGATCAATTCTCTCCGGAGTTCTGTTCTTTCATCTCTA
rJMSF047J19+          AACCCGAGCCTTATGCACCTCCCGATCAATTCTCTCCAGAGTTCTGTTCTTTCATCTCTA
rJMSF049J23+          AACCCGAGCCTTATGCACCTCCCGATCAATTCTCTCCAGAGTTCTGTTCTTTCATCTCTA
                      ____________________________________________________________
consensus             AACCCGAGCCTTATGCACCTCCCGATCAATTCTCTCCAGAGTTCTGTTCTTTCATCTCTA
 
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rJMSF050I18+          AATGCGTGCAGAAGGACCCGAAAAAGAGACTGTCAGCAAATGAGTTAATGAGGCACCCGT
rJMSF024M17+          AATGTGTGCAGAAGGACCCAAAAAAGAGACTGTCAGCAAATGAATTAATGAGGCACCCAT
rJMSF047J19+          AATGCGTGCAGAAGGACCCGAAAAAGAGACTGTCAGCAAATGAGTTAATGAGGCACCCGT
rJMSF049J23+          AATGCGTGCAGAAGGACCCGAAAAAGAGACTGTCAGCAAATGAGTTAATGAGGCACCCGT
                      ____________________________________________________________
consensus             AATGCGTGCAGAAGGACCCGAAAAAGAGACTGTCAGCAAATGAGTTAATGAGGCACCCGT
 
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rJMSF050I18+          TCATCAGTATGTACGATCACCTGGATATTGATCTTGCATCTTACTTTACTGCTGTAAGGC
rJMSF024M17+          TCATCAGTATGTACGATCACCTGGATATTGATCTTGCATCTTACTTTACCGCTGTAAGGC
rJMSF047J19+          TCATCAGTATGTACGATCACCTGGATATTGATCTTGCATCTTACTTTACTGCTGTAAGGC
rJMSF049J23+          TCATCAGTATGTACGATCACCTGGATATTGATCTTGCATCTTACTTTACTGCTGTAAGGC
                      ____________________________________________________________
consensus             TCATCAGTATGTACGATCACCTGGATATTGATCTTGCATCTTACTTTACTGCTGTAAGGC
 
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rJMSF050I18+          CTCCACCTGCAACATTTTGAGTTAAAAACGAACGAACGGTTCTATTCAACCTTTAGCGCG
rJMSF024M17+          CTCCACCTGCAACATTTTGAGTTA                                    
rJMSF047J19+          CTCCACCTGCAACATTTTGAGTTAAAAACGAACGAACGGTTCTATTCAACCTTTAGCGCG
rJMSF049J23+          CTCCACCTGCAACATTTTGAGTTAAAAACGAACGAACGGTTCTATTCAACCTTTAGCGCG
                      ____________________________________________________________
consensus             CTCCACCTGCAACATTTTGAGTTAAAAACGAACGAACGGTTCTATTCAACCTTTAGCGCG
 
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rJMSF050I18+          AATCTCCCTTCATGTTCTCATAACGCAATGCTCTTCTCCTACTCGGGCCTTGTGTGGATC
rJMSF047J19+          AATCTCCCTTCATGTTCTCATAACGCAATGCTCTTCTCCTACTCGGGCCTTGTGTGGATC
rJMSF049J23+          AATCTCCCTTCATGTTCTCATAACGCAATGCTCTTCTCCTACTCGGGCCTTGTGTGGATC
                      ____________________________________________________________
consensus             AATCTCCCTTCATGTTCTCATAACGCAATGCTCTTCTCCTACTCGGGCCTTGTGTGGATC
 
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rJMSF050I18+          TAACCGCGATCAAGATCACCTGCATTTCTATCTTCAATCAGCGACTCACCTACCTGCCAT
rJMSF047J19+          TAACCGCGATCAAGATCACCTGCATTTCTATCTTCAATCAGCGACTCACCTACCTGCCAT
rJMSF049J23+          TAACCGCGATCAAGATCACCTGCATTTCTATCTTCAATCAGCGACTCACCTACCTGCCAT
                      ____________________________________________________________
consensus             TAACCGCGATCAAGATCACCTGCATTTCTATCTTCAATCAGCGACTCACCTACCTGCCAT
 
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rJMSF050I18+          AGCTCCCCTCAGCAAGCAAATTTATGGTCATTTAATTTCAAGTCTTCAACTGTTTCTTGT
rJMSF047J19+          AGCTCCCCTCAGCAAGCAAATTTATGGTCATTTAATTTCAAGTCTTCAACTGTTTCTTGT
rJMSF049J23+          AGCTCCCCTCAGCAAGCAAATTTATGGTCATTTAATTTCAAGTCTTCAACTGTTTCTTGT
                      ____________________________________________________________
consensus             AGCTCCCCTCAGCAAGCAAATTTATGGTCATTTAATTTCAAGTCTTCAACTGTTTCTTGT
 
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rJMSF050I18+          TTCTTCCAGCAACAACTCTATCTGCTTAGACA                            
rJMSF047J19+          TTCTTCCAGCAACAACTCTATCTGCTTAGACATTCTTCTTT                   
rJMSF049J23+          TTCTTCCAGCAACAACTCTATCTGCTTAGACATTCTTCTTTTCTGGAAACTATAATCAAA
                      ____________________________________________________________
consensus             TTCTTCCAGCAACAACTCTATCTGCTTAGACATTCTTCTTTTCTGGAAACTATAATCAAA
 
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rJMSF049J23+          TCAATGCAAAAAACACAAAANTAAAACAAAAAATACTACCTAAATGATGGACAACGGAAT
                      ____________________________________________________________
consensus             TCAATGCAAAAAACACAAAANTAAAACAAAAAATACTACCTAAATGATGGACAACGGAAT