Contig 007233:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037A12Sequence674002362 (3)dbj|BAO57282.1|6e-49POZ/BTB containing protein [Ipomoea nil]702007233 (3)dbj|BAO57282.1|1e-109POZ/BTB containing protein [Ipomoea nil]
JMSF049C04Sequence696002362 (3)dbj|BAO57282.1|3e-38POZ/BTB containing protein [Ipomoea nil]735007233 (3)dbj|BAO57282.1|2e-109POZ/BTB containing protein [Ipomoea nil]
JMSF049M23Sequence686002362 (3)dbj|BAO57282.1|2e-57POZ/BTB containing protein [Ipomoea nil]670007233 (3)dbj|BAO57282.1|4e-103POZ/BTB containing protein [Ipomoea nil]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF037A12+ AAGGCGGAGTCCTCC
rJMSF049C04+ AAGGCGGAGTCCTCC
                      ____________________________________________________________
consensus AAGGCGGAGTCCTCC
 
. : . : . : . : . : . :
rJMSF037A12+ CATCGTCAGCGAATCCAAGCTGCAGATGATTCTTCTTCTGGTAGTCACCGTTTTGTTGAG
rJMSF049M23+ AAGCTGCAGATGATTCTTCTTCTGGTAGTCACCGTTTTGTTGAG
rJMSF049C04+ CATCGTCAGCGAATCCAAGCTGCAGATGATTCTTCTTCTGGTAGTCACCGTTTTGTTGAG
                      ____________________________________________________________
consensus CATCGTCAGCGAATCCAAGCTGCAGATGATTCTTCTTCTGGTAGTCACCGTTTTGTTGAG
 
. : . : . : . : . : . :
rJMSF037A12+ CGTGTGTACAAGTACCGGCCTATCAAAGTGATTGAGTTCGAGCATCCACGGCAACAATGT
rJMSF049M23+ CGTGTGTACAAGTACCGGCCTATCAAAGTGATTGAGTTCGAGCATCCACGGCAACAATGT
rJMSF049C04+ CGTGTGTACAAGTACCGGCCTATCAAAGTGATTGAGTTCGAGCATCCACGGCAACAATGT
                      ____________________________________________________________
consensus CGTGTGTACAAGTACCGGCCTATCAAAGTGATTGAGTTCGAGCATCCACGGCAACAATGT
 
. : . : . : . : . : . :
rJMSF037A12+ GTAGTGTACTTAGATCTTAAGCGGGAAGAGTGCAGTAATTTATTTCCATCTGGGAGAGTA
rJMSF049M23+ GTAGTGTACTTAGATCTTAAGCGGGAAGAGTGCAGTAATTTATTTCCATCTGGGAGAGTA
rJMSF049C04+ GTAGTGTACTTAGATCTTAAGCGGGAAGAGTGCAGTAATTTATTTCCATCTGGGAGAGTA
                      ____________________________________________________________
consensus GTAGTGTACTTAGATCTTAAGCGGGAAGAGTGCAGTAATTTATTTCCATCTGGGAGAGTA
 
. : . : . : . : . : . :
rJMSF037A12+ TATTCTCAAGCATTTCACCTGGGAGGGCAAGGGTTTTTTCTGTCAGCACATTGCAACATG
rJMSF049M23+ TATTCTCAAGCATTTCACCTGGGAGGGCAAGGGTTTTTTCTGTCAGCACATTGCAACATG
rJMSF049C04+ TATTCTCAAGCATTTCACCTGGGAGGGCAAGGGTTTTTTCTGTCAGCACATTGCAACATG
                      ____________________________________________________________
consensus TATTCTCAAGCATTTCACCTGGGAGGGCAAGGGTTTTTTCTGTCAGCACATTGCAACATG
 
. : . : . : . : . : . :
rJMSF037A12+ GATCAACAGAACATTTTCTACTGTTTTGGTCTGTTTCTGGGAATGCAGGAAAAGGGGTTG
rJMSF049M23+ GATCAACAGAACATTTTCTACTGTTTTGGTCTGTTTCTGGGAATGCAGGAAAAGGGGTTG
rJMSF049C04+ GATCAACAGAACATTTTCTACTGTTTTGGTCTGTTTCTGGGAATGCAGGAAAAGGGGTTG
                      ____________________________________________________________
consensus GATCAACAGAACATTTTCTACTGTTTTGGTCTGTTTCTGGGAATGCAGGAAAAGGGGTTG
 
. : . : . : . : . : . :
rJMSF037A12+ GTGTCATTCGCAGTGGACTATGAGTTTGCAGCAAGATCAAAACCAACGGAGGAATTTGTT
rJMSF049M23+ GTGTCATTCGCAGTGGACTATGAGTTTGCAGCAAGATCAAAACCAACGGAGGAATTTGTT
rJMSF049C04+ GTGTCATTCGCAGTGGACTATGAGTTTGCAGCAAGATCAAAACCAACGGAGGAATTTGTT
                      ____________________________________________________________
consensus GTGTCATTCGCAGTGGACTATGAGTTTGCAGCAAGATCAAAACCAACGGAGGAATTTGTT
 
. : . : . : . : . : . :
rJMSF037A12+ AGCAAATACAAAGGAAATTACACCTTCACTGGGGGAAAGGCAGTTGGTTATCGCAATTTA
rJMSF049M23+ AGCAAATACAAAGGAAATTACACCTTCACTGGGGGAAAGGCAGTTGGTTATCGCAATTTA
rJMSF049C04+ AGCAAATACAAAGGAAATTACACCTTCACTGGGGGAAAGGCAGTTGGTTATCGCAATTTA
                      ____________________________________________________________
consensus AGCAAATACAAAGGAAATTACACCTTCACTGGGGGAAAGGCAGTTGGTTATCGCAATTTA
 
. : . : . : . : . : . :
rJMSF037A12+ TTTGGCATAGGATGGACTTCTTTCATGGCAGATGACAGTCCCTACTTCATCAATGGCATT
rJMSF049M23+ TTTGGCATAGGATGGACTTCTTTCATGGCAGATGACAGTCCCTACTTCATCAATGGCATT
rJMSF049C04+ TTTGGCATAGGATGGACTTCTTTCATGGCAGATGACAGTCCCTACTTCATCAATGGCATT
                      ____________________________________________________________
consensus TTTGGCATAGGATGGACTTCTTTCATGGCAGATGACAGTCCCTACTTCATCAATGGCATT
 
. : . : . : . : . : . :
rJMSF037A12+ CTCCATCTTAGGGCGGAGCTTACAATCAAGCACTAACATTCCCTTGCTTCTGTTTTTTTG
rJMSF049M23+ CTCCATCTTAGGGCGGAGCTTACAATCAAGCACTAACATTCCCTTGCTTCTGTTTTTTTG
rJMSF049C04+ CTCCATCTTAGGGCGGAGCTTACAATCAAGCACTAACATTCCCTTGCTTCTGTTTTTTTG
                      ____________________________________________________________
consensus CTCCATCTTAGGGCGGAGCTTACAATCAAGCACTAACATTCCCTTGCTTCTGTTTTTTTG
 
. : . : . : . : . : . :
rJMSF037A12+ TTTTCAGAACTTGTTTTCCCATGGCTTCGGCCTTTAGGTTATGGATGGCGACAACACTAA
rJMSF049M23+ TTTTCAGAACTTGTTTTCCCATGGCTTCGGCCTTTAGGTTATGGATGGCGACAACACTAA
rJMSF049C04+ TTTTCAGAACTTGTTTTCCCATGGCTTCGGCCTTTAGGTTATGGATGGCGACAACACTAA
                      ____________________________________________________________
consensus TTTTCAGAACTTGTTTTCCCATGGCTTCGGCCTTTAGGTTATGGATGGCGACAACACTAA
 
. : . : . : . : . : . :
rJMSF037A12+ CAGCTATAGATTAGATTAGACAGATTTTCGGACATTGTTCATGTTCTTCCTTTTGTCCTC
rJMSF049M23+ CAGCTATAGATTAGATTAGACAGATTTTCGGACATTGTTCATGTTCTTCCTTTTGTCCTC
rJMSF049C04+ CAGCTATAGATTAGATTAGACAGATTTTCGGACATTGTTCATGTTCTTCCTTTTGTCCTC
                      ____________________________________________________________
consensus CAGCTATAGATTAGATTAGACAGATTTTCGGACATTGTTCATGTTCTTCCTTTTGTCCTC
 
. : . : . : . : . : . :
rJMSF037A12+ TGGATTCAATTGGATGTAAATGTAAT
rJMSF049M23+ TGGATTCAATTGGATGTAAATGTAAT
rJMSF049C04+ TGGATTCAATTGGATGTAAATGTAATTAAACACCGCGTAAATGTCATTGATGAATGTCGT
                      ____________________________________________________________
consensus TGGATTCAATTGGATGTAAATGTAATTAAACACCGCGTAAATGTCATTGATGAATGTCGT