Contig 007233:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037A12Sequence674002362 (3)dbj|BAO57282.1|6e-49POZ/BTB containing protein [Ipomoea nil]702007233 (3)dbj|BAO57282.1|1e-109POZ/BTB containing protein [Ipomoea nil]
JMSF049C04Sequence696002362 (3)dbj|BAO57282.1|3e-38POZ/BTB containing protein [Ipomoea nil]735007233 (3)dbj|BAO57282.1|2e-109POZ/BTB containing protein [Ipomoea nil]
JMSF049M23Sequence686002362 (3)dbj|BAO57282.1|2e-57POZ/BTB containing protein [Ipomoea nil]670007233 (3)dbj|BAO57282.1|4e-103POZ/BTB containing protein [Ipomoea nil]

Alignment

This contig is upended


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rJMSF037A12+                                                       AAGGCGGAGTCCTCC
rJMSF049C04+                                                       AAGGCGGAGTCCTCC
                      ____________________________________________________________
consensus                                                          AAGGCGGAGTCCTCC
 
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rJMSF037A12+          CATCGTCAGCGAATCCAAGCTGCAGATGATTCTTCTTCTGGTAGTCACCGTTTTGTTGAG
rJMSF049M23+                          AAGCTGCAGATGATTCTTCTTCTGGTAGTCACCGTTTTGTTGAG
rJMSF049C04+          CATCGTCAGCGAATCCAAGCTGCAGATGATTCTTCTTCTGGTAGTCACCGTTTTGTTGAG
                      ____________________________________________________________
consensus             CATCGTCAGCGAATCCAAGCTGCAGATGATTCTTCTTCTGGTAGTCACCGTTTTGTTGAG
 
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rJMSF037A12+          CGTGTGTACAAGTACCGGCCTATCAAAGTGATTGAGTTCGAGCATCCACGGCAACAATGT
rJMSF049M23+          CGTGTGTACAAGTACCGGCCTATCAAAGTGATTGAGTTCGAGCATCCACGGCAACAATGT
rJMSF049C04+          CGTGTGTACAAGTACCGGCCTATCAAAGTGATTGAGTTCGAGCATCCACGGCAACAATGT
                      ____________________________________________________________
consensus             CGTGTGTACAAGTACCGGCCTATCAAAGTGATTGAGTTCGAGCATCCACGGCAACAATGT
 
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rJMSF037A12+          GTAGTGTACTTAGATCTTAAGCGGGAAGAGTGCAGTAATTTATTTCCATCTGGGAGAGTA
rJMSF049M23+          GTAGTGTACTTAGATCTTAAGCGGGAAGAGTGCAGTAATTTATTTCCATCTGGGAGAGTA
rJMSF049C04+          GTAGTGTACTTAGATCTTAAGCGGGAAGAGTGCAGTAATTTATTTCCATCTGGGAGAGTA
                      ____________________________________________________________
consensus             GTAGTGTACTTAGATCTTAAGCGGGAAGAGTGCAGTAATTTATTTCCATCTGGGAGAGTA
 
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rJMSF037A12+          TATTCTCAAGCATTTCACCTGGGAGGGCAAGGGTTTTTTCTGTCAGCACATTGCAACATG
rJMSF049M23+          TATTCTCAAGCATTTCACCTGGGAGGGCAAGGGTTTTTTCTGTCAGCACATTGCAACATG
rJMSF049C04+          TATTCTCAAGCATTTCACCTGGGAGGGCAAGGGTTTTTTCTGTCAGCACATTGCAACATG
                      ____________________________________________________________
consensus             TATTCTCAAGCATTTCACCTGGGAGGGCAAGGGTTTTTTCTGTCAGCACATTGCAACATG
 
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rJMSF037A12+          GATCAACAGAACATTTTCTACTGTTTTGGTCTGTTTCTGGGAATGCAGGAAAAGGGGTTG
rJMSF049M23+          GATCAACAGAACATTTTCTACTGTTTTGGTCTGTTTCTGGGAATGCAGGAAAAGGGGTTG
rJMSF049C04+          GATCAACAGAACATTTTCTACTGTTTTGGTCTGTTTCTGGGAATGCAGGAAAAGGGGTTG
                      ____________________________________________________________
consensus             GATCAACAGAACATTTTCTACTGTTTTGGTCTGTTTCTGGGAATGCAGGAAAAGGGGTTG
 
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rJMSF037A12+          GTGTCATTCGCAGTGGACTATGAGTTTGCAGCAAGATCAAAACCAACGGAGGAATTTGTT
rJMSF049M23+          GTGTCATTCGCAGTGGACTATGAGTTTGCAGCAAGATCAAAACCAACGGAGGAATTTGTT
rJMSF049C04+          GTGTCATTCGCAGTGGACTATGAGTTTGCAGCAAGATCAAAACCAACGGAGGAATTTGTT
                      ____________________________________________________________
consensus             GTGTCATTCGCAGTGGACTATGAGTTTGCAGCAAGATCAAAACCAACGGAGGAATTTGTT
 
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rJMSF037A12+          AGCAAATACAAAGGAAATTACACCTTCACTGGGGGAAAGGCAGTTGGTTATCGCAATTTA
rJMSF049M23+          AGCAAATACAAAGGAAATTACACCTTCACTGGGGGAAAGGCAGTTGGTTATCGCAATTTA
rJMSF049C04+          AGCAAATACAAAGGAAATTACACCTTCACTGGGGGAAAGGCAGTTGGTTATCGCAATTTA
                      ____________________________________________________________
consensus             AGCAAATACAAAGGAAATTACACCTTCACTGGGGGAAAGGCAGTTGGTTATCGCAATTTA
 
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rJMSF037A12+          TTTGGCATAGGATGGACTTCTTTCATGGCAGATGACAGTCCCTACTTCATCAATGGCATT
rJMSF049M23+          TTTGGCATAGGATGGACTTCTTTCATGGCAGATGACAGTCCCTACTTCATCAATGGCATT
rJMSF049C04+          TTTGGCATAGGATGGACTTCTTTCATGGCAGATGACAGTCCCTACTTCATCAATGGCATT
                      ____________________________________________________________
consensus             TTTGGCATAGGATGGACTTCTTTCATGGCAGATGACAGTCCCTACTTCATCAATGGCATT
 
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rJMSF037A12+          CTCCATCTTAGGGCGGAGCTTACAATCAAGCACTAACATTCCCTTGCTTCTGTTTTTTTG
rJMSF049M23+          CTCCATCTTAGGGCGGAGCTTACAATCAAGCACTAACATTCCCTTGCTTCTGTTTTTTTG
rJMSF049C04+          CTCCATCTTAGGGCGGAGCTTACAATCAAGCACTAACATTCCCTTGCTTCTGTTTTTTTG
                      ____________________________________________________________
consensus             CTCCATCTTAGGGCGGAGCTTACAATCAAGCACTAACATTCCCTTGCTTCTGTTTTTTTG
 
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rJMSF037A12+          TTTTCAGAACTTGTTTTCCCATGGCTTCGGCCTTTAGGTTATGGATGGCGACAACACTAA
rJMSF049M23+          TTTTCAGAACTTGTTTTCCCATGGCTTCGGCCTTTAGGTTATGGATGGCGACAACACTAA
rJMSF049C04+          TTTTCAGAACTTGTTTTCCCATGGCTTCGGCCTTTAGGTTATGGATGGCGACAACACTAA
                      ____________________________________________________________
consensus             TTTTCAGAACTTGTTTTCCCATGGCTTCGGCCTTTAGGTTATGGATGGCGACAACACTAA
 
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rJMSF037A12+          CAGCTATAGATTAGATTAGACAGATTTTCGGACATTGTTCATGTTCTTCCTTTTGTCCTC
rJMSF049M23+          CAGCTATAGATTAGATTAGACAGATTTTCGGACATTGTTCATGTTCTTCCTTTTGTCCTC
rJMSF049C04+          CAGCTATAGATTAGATTAGACAGATTTTCGGACATTGTTCATGTTCTTCCTTTTGTCCTC
                      ____________________________________________________________
consensus             CAGCTATAGATTAGATTAGACAGATTTTCGGACATTGTTCATGTTCTTCCTTTTGTCCTC
 
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rJMSF037A12+          TGGATTCAATTGGATGTAAATGTAAT                                  
rJMSF049M23+          TGGATTCAATTGGATGTAAATGTAAT                                  
rJMSF049C04+          TGGATTCAATTGGATGTAAATGTAATTAAACACCGCGTAAATGTCATTGATGAATGTCGT
                      ____________________________________________________________
consensus             TGGATTCAATTGGATGTAAATGTAATTAAACACCGCGTAAATGTCATTGATGAATGTCGT