Contig 007232:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF049A12Sequence706007232 (2)gb|EYU42040.1|6e-77hypothetical protein MIMGU_mgv1a015977mg [Erythranthe guttata] gb|EYU42041.1| hy746007232 (2)gb|EYU42040.1|1e-76hypothetical protein MIMGU_mgv1a015977mg [Erythranthe guttata] gb|EYU42041.1| hy

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-                                             GGCCTGTTAAAGCAGAGCGAAATAGA
rJMSF049A12+                                            GGCCTGTTAAAGCAGAGCGAAATAGA
                      ____________________________________________________________
consensus                                               GGCCTGTTAAAGCAGAGCGAAATAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           TGACCCAAATCCAGCAAAGTCTTTCTAAATCAAACACCGTCGTGTTCCGTACTAATTCAA
rJMSF049A12+          TGACCCAAATCCAGCAAAGTCTTTCTAAATCAAACACCGTCGTGTTCCGTACTAATTCAA
                      ____________________________________________________________
consensus             TGACCCAAATCCAGCAAAGTCTTTCTAAATCAAACACCGTCGTGTTCCGTACTAATTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           CCCGTTTTGGGGAGGGCTCTGGTTTCATTAAGGGGGAATTGAACTGTGCTAGAGAGAATT
rJMSF049A12+          CCCGTTTTGGGGAGGGCTCTGGTTTCATTAAGGGGGAATTGAACTGTGCTAGAGAGAATT
                      ____________________________________________________________
consensus             CCCGTTTTGGGGAGGGCTCTGGTTTCATTAAGGGGGAATTGAACTGTGCTAGAGAGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           CTGTATCTGTGCTAGAGAATGGGGCATATCTTAGCCAAGTTATGTTTTGTACCCAAGCAA
rJMSF049A12+          CTGTATCTGTGCTAGAGAATGGGGCATATCTTAGCCAAGTTATGTTTTGTACCCAAGCAA
                      ____________________________________________________________
consensus             CTGTATCTGTGCTAGAGAATGGGGCATATCTTAGCCAAGTTATGTTTTGTACCCAAGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           CGGTCCAAGAATGATGGGGATGACTCTGACCATCACGTTGAATTTGCTGGAGGAAACGTA
rJMSF049A12+          CGGTCCAAGAATGATGGGGATGACTCTGACCATCACGTTGAATTTGCTGGAGGAAACGTA
                      ____________________________________________________________
consensus             CGGTCCAAGAATGATGGGGATGACTCTGACCATCACGTTGAATTTGCTGGAGGAAACGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           CACCTCATCACTACAAAAGAAAGTTGGGAGCAAAAGCTGGAAGAAGCAAGAAGAGACGGC
rJMSF049A12+          CACCTCATCACTACAAAAGAAAGTTGGGAGCAAAAGCTGGAAGAAGCAAGAAGAGACGGC
                      ____________________________________________________________
consensus             CACCTCATCACTACAAAAGAAAGTTGGGAGCAAAAGCTGGAAGAAGCAAGAAGAGACGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           AAAACAGTTGTGGCAAATTTTAGTGCTTCGTGGTGCGGTCCATGTCGAATGATTGCACCA
rJMSF049A12+          AAAACAGTTGTGGCAAATTTTAGTGCTTCGTGGTGCGGTCCATGTCGAATGATTGCACCA
                      ____________________________________________________________
consensus             AAAACAGTTGTGGCAAATTTTAGTGCTTCGTGGTGCGGTCCATGTCGAATGATTGCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           TTGTTCTGCGAGCTTTCAGAGAAACACCCTTCTCTGATGTTTCTGACAGTTGATGTTGAT
rJMSF049A12+          TTGTTCTGCGAGCTTTCAGAGAAACACCCTTCTCTGATGTTTCTGACAGTTGATGTTGAT
                      ____________________________________________________________
consensus             TTGTTCTGCGAGCTTTCAGAGAAACACCCTTCTCTGATGTTTCTGACAGTTGATGTTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           GAACTTACAGAATTCAGCACGTCCTGGGATATCAAAGCAACCCCGACCTTCTTCTTCCTC
rJMSF049A12+          GAACTTACAGAATTCAGCACGTCCTGGGATATCAAAGCAACCCCGACCTTCTTCTTCCTC
                      ____________________________________________________________
consensus             GAACTTACAGAATTCAGCACGTCCTGGGATATCAAAGCAACCCCGACCTTCTTCTTCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           AAAGATGGACAACAAGTCGACAAATTGGTAGGGGCCAACAAGCCAGAATTGCAGAAGAAG
rJMSF049A12+          AAAGATGGACAACAAGTCGACAAATTGGTAGGGGCCAACAAGCCAGAATTGCAGAAGAAG
                      ____________________________________________________________
consensus             AAAGATGGACAACAAGTCGACAAATTGGTAGGGGCCAACAAGCCAGAATTGCAGAAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           ATAACAGCCATTGTAGACACCGAAACGCGATGCCAGAAATAGTGCTATTATGGTTATGTT
rJMSF049A12+          ATAACAGCCATTGTAGACACCGAAACGCGATGCCAGAAATAGTGCTATTATGGTTATGTT
                      ____________________________________________________________
consensus             ATAACAGCCATTGTAGACACCGAAACGCGATGCCAGAAATAGTGCTATTATGGTTATGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           CTTTTAAGTGTTATGTGATCATATGTTTATTTATGTGCAAATGTAAATCCNACCCAGTTT
rJMSF049A12+          CTTTTAAGTGTTATGTGATCATATGTTTATTTATGTGCAAATGTAAATCCAACCCAGTTT
                      ____________________________________________________________
consensus             CTTTTAAGTGTTATGTGATCATATGTTTATTTATGTGCAAATGTAAATCCAACCCAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049A12-           TTCCATGGTCTTTTTGACCA                                        
rJMSF049A12+          TTCCATGGTCTTTTTGACCAAGAATCCATGAAAAGAAGAGTGCTTTGTGAAAAACATCAA
                      ____________________________________________________________
consensus             TTCCATGGTCTTTTTGACCAAGAATCCATGAAAAGAAGAGTGCTTTGTGAAAAACATCAA