| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN039C05 | Sequence | 602 | 007230 (8) | ref|XP_006349930.1| | 6e-40 | PREDICTED: translation initiation factor IF-1, chloroplastic-like [Solanum tube | |||||
| JMFN043A06 | Sequence | 620 | 007230 (8) | ref|XP_006349930.1| | 8e-40 | PREDICTED: translation initiation factor IF-1, chloroplastic-like [Solanum tube | |||||
| JMSF029J24 | Sequence | 664 | 007230 (8) | ref|XP_006349930.1| | 1e-39 | PREDICTED: translation initiation factor IF-1, chloroplastic-like [Solanum tube | 658 | 007230 (8) | ref|XP_006349930.1| | 1e-39 | PREDICTED: translation initiation factor IF-1, chloroplastic-like [Solanum tube |
| JMSF036E14 | Sequence | 607 | 007230 (8) | ref|XP_006349930.1| | 7e-40 | PREDICTED: translation initiation factor IF-1, chloroplastic-like [Solanum tube | 563 | 007230 (8) | ref|XP_006349930.1| | 4e-40 | PREDICTED: translation initiation factor IF-1, chloroplastic-like [Solanum tube |
| JMSF048K21 | Sequence | 634 | 007230 (8) | ref|XP_006349930.1| | 9e-40 | PREDICTED: translation initiation factor IF-1, chloroplastic-like [Solanum tube | 587 | 007230 (8) | ref|XP_006349930.1| | 6e-40 | PREDICTED: translation initiation factor IF-1, chloroplastic-like [Solanum tube |
This contig is upended
. : . : . : . : . : . :
JMSF029J24+ AAAACGAAATTT
____________________________________________________________
consensus AAAACGAAATTT
. : . : . : . : . : . :
JMSF029J24+ TGCTTCAACAGATAAAATCAAAAATTGCAATGAATAAGTAATAATTACTTGTTATACCAA
JMFN043A06+ CAGATAAAATCAAAAATTGCAATGAATAAGTAATAATTACTTGTTATACCAA
JMSF036E14+ CCAA
JMFN039C05+ GAATAAGTAATAATTACTTGTTATACCAA
rJMSF029J24- ACAGATAAAATCAAAAATTGCAATGAATAAGTAATAATTACTTGTTATACCAA
JMSF048K21+ AGTAATAATTACTTGTTATACCAA
____________________________________________________________
consensus TGCTTCAACAGATAAAATCAAAAATTGCAATGAATAAGTAATAATTACTTGTTATACCAA
. : . : . : . : . : . :
JMSF029J24+ AAGTTTACATTGTTTTGAACATTATCAATTTGTGGAAGGAGATACGAACCGCAAACCCGT
JMFN043A06+ AAGTTNACATTGTTTTGAACATTATCAATTTGTGGAAGGAGATACGAACCGCAAACCCGT
rJMSF036E14- AGGAGATACGAACCGCAAACCCGT
JMSF036E14+ AAGTTTACATTGTTTTGAACATTATCAATTTGTGGAAGGAGATACGAACCGCAAACCCGT
JMFN039C05+ AAGTTTACATGTCTTTGAACATTATCAATTTGTGGAAGGAGATACGAACCGCAAACCCGT
rJMSF029J24- AAGTTTACATTGTTTTGAACATTATCAATTTGTGGAAGGAGATACGAACCGCAAACCCGT
JMSF048K21+ AAGTTTACATTGTTTTGAACATTATCAATTTGTGGAAGGAGATACGAACCGCAAACCCGT
rJMSF048K21- ACATTATCAATTTGTGGAAGGAGATACGAACCGCAAACCCGT
____________________________________________________________
consensus AAGTTTACATTGTTTTGAACATTATCAATTTGTGGAAGGAGATACGAACCGCAAACCCGT
. : . : . : . : . : . :
JMSF029J24+ GACCCGGAACTATGAATTAGGGTCCTTGCCGCGGAGCCGGAAGATAATCCGTCCTCGGCT
JMFN043A06+ GACCCGGAACTATGAATTAGGGTCCTTGCCGCGGAGCCGGAAGATAATCCGTCCTCGGCT
rJMSF036E14- GACCCGGAACTATGAATTAGGGTCCTTGCCGCGGAGCCGGAAGATAATCCGTCCTCGGCT
JMSF036E14+ GACCCGGAACTATGAATTAGGGTCCTTGCCGCGGAGCCGGAAGATAATCCGTCCTCGGCT
JMFN039C05+ GACCCGGAACTATGAATTAGGGTCCTTGCCGCGGAGCCGGAAGATAATCCGTCCTCGGCT
rJMSF029J24- GACCCGGAACTATGAATTAGGGTCCTTGCCGCGGAGCCGGAAGATAATCCGTCCTCGGCT
JMSF048K21+ GACCCGGAACTATGAATTAGGGTCCTTGCCGCGGAGCCGGAAGATAATCCGTCCTCGGCT
rJMSF048K21- GACCCGGAACTATGAATTAGGGTCCTTGCCGCGGAGCCGGAAGATAATCCGTCCTCGGCT
____________________________________________________________
consensus GACCCGGAACTATGAATTAGGGTCCTTGCCGCGGAGCCGGAAGATAATCCGTCCTCGGCT
. : . : . : . : . : . :
JMSF029J24+ CGAGTCGTAACGGCTGACTTCGACTCTGACTCGGTCTCCGGGCAACAGCCGGATGAAATT
JMFN043A06+ CGAGTCGTAACGGCTGACTTCGACTCTGACTCGGTCTCCGGGCAACAGCCGGATGAAATT
rJMSF036E14- CGAGTCGTAACGGCTGACTTCGACTCTGACTCGGTCTCCGGGCAACAGCCGGATGAAATT
JMSF036E14+ CGAGTCGTAACGGCTGACTTCGACTCTGACTCGGTCTCCGGGCAACAGCCGGATGAAATT
JMFN039C05+ CGAGTCGTAACGGCTGACTTCGACTCTGACTCGGTCTCCGGGCAACAGCCGGATGAAATT
rJMSF029J24- CGAGTCGTAACGGCTGACTTCGACTCTGACTCGGTCTCCGGGCAACAGCCGGATGAAATT
JMSF048K21+ CGAGTCGTAACGGCTGACTTCGACTCTGACTCGGTCTCCGGGCAACAGCCGGATGAAATT
rJMSF048K21- CGAGTCGTAACGGCTGACTTCGACTCTGACTCGGTCTCCGGGCAACAGCCGGATGAAATT
____________________________________________________________
consensus CGAGTCGTAACGGCTGACTTCGACTCTGACTCGGTCTCCGGGCAACAGCCGGATGAAATT
. : . : . : . : . : . :
JMSF029J24+ CTTCCGGATCTTGCCGGAAATGTAACCTAGAATGACGTCATCGTTATCCAATCGGACCCT
JMFN043A06+ CTTCCGGATCTTGCCGGAAATGTAACCTAGAATGACGTCATCGTTATCCAATCGGACCCT
rJMSF036E14- CTTCCGGATCTTGCCGGAAATGTAACCTAGAATGACGTCATCGTTATCCAATCGGACCCT
JMSF036E14+ CTTCCGGATCTTGCCGGAAATGTAACCTAGAATGACGTCATCGTTATCCAATCGGACCCT
JMFN039C05+ CTTCCGGATCTTGCCGGAAATGTAACCTAGAATGACGTCATCGTTATCCAATCGGACCCT
rJMSF029J24- CTTCCGGATCTTGCCGGAAATGTAACCTAGAATGACGTCATCGTTATCCAATCGGACCCT
JMSF048K21+ CTTCCGGATCTTGCCGGAAATGTAACCTAGAATGACGTCATCGTTATCCAATCGGACCCT
rJMSF048K21- CTTCCGGATCTTGCCGGAAATGTAACCTAGAATGACGTCATCGTTATCCAATCGGACCCT
____________________________________________________________
consensus CTTCCGGATCTTGCCGGAAATGTAACCTAGAATGACGTCATCGTTATCCAATCGGACCCT
. : . : . : . : . : . :
JMSF029J24+ GAACATGCCGTTGGAGAGCGACTCCGTTATCGAGCCCTCGTGCGTCATCTTCTGCTCGGC
JMFN043A06+ GAACATGCCGTTGGAGAGCGACTCCGTTATCGAGCCCTCGTGCGTCATCTTCTGCTCGGC
rJMSF036E14- GAACATGCCGTTGGAGAGCGACTCCGTTATCGAGCCCTCGTGCGTCATCTTCTGCTCGGC
JMSF036E14+ GAACATGCCGTTGGAGAGCGACTCCGTTATCGAGCCCTCGTGCGTCATCTTCTGCTCGGC
JMFN039C05+ GAACATGCCGTTGGAGAGCGACTCCGTTATCGAGCCCTCGTGCGTCATCTTCTGCTCGGC
rJMSF029J24- GAACATGCCGTTGGAGAGCGACTCCGTTATCGAGCCCTCGTGCGTCATCTTCTGCTCGGC
JMSF048K21+ GAACATGCCGTTGGAGAGCGACTCCGTTATCGAGCCCTCGTGCGTCATCTTCTGCTCGGC
rJMSF048K21- GAACATGCCGTTGGAGAGCGACTCCGTTATCGAGCCCTCGTGCGTCATCTTCTGCTCGGC
____________________________________________________________
consensus GAACATGCCGTTGGAGAGCGACTCCGTTATCGAGCCCTCGTGCGTCATCTTCTGCTCGGC
. : . : . : . : . : . :
JMSF029J24+ CGCCGCTTGGCACCGGACACTATTTCCGTTCATCTTCCTCGGCGAATCGCGCGGCGAGTT
JMFN043A06+ CGCCGCTTGGCACCGGACACTATTTCCGTTCATCTTCCTCGGCGAATCGCGCGGCGAGTT
rJMSF036E14- CGCCGCTTGGCACCGGACACTATTTCCGTTCATCTTCCTCGGCGAATCGCGCGGCGAGTT
JMSF036E14+ CGCCGCTTGGCACCGGACACTATTTCCGTTCATCTTCCTCGGCGAATCGCGCGGCGAGTT
JMFN039C05+ CGCCGCTTGGCACCGGACACTATTTCCGTTCATCTTCCTCGGCGAATCGCGCGGCGAGTT
rJMSF029J24- CGCCGCTTGGCACCGGACACTATTTCCGTTCATCTTCCTCGGCGAATCGCGCGGCGAGTT
JMSF048K21+ CGCCGCTTGGCACCGGACACTATTTCCGTTCATCTTCCTCGGCGAATCGCGCGGCGAGTT
rJMSF048K21- CGCCGCTTGGCACCGGACACTATTTCCGTTCATCTTCCTCGGCGAATCGCGCGGCGAGTT
____________________________________________________________
consensus CGCCGCTTGGCACCGGACACTATTTCCGTTCATCTTCCTCGGCGAATCGCGCGGCGAGTT
. : . : . : . : . : . :
JMSF029J24+ GATCAAACCGCCCCTGGCTTTAGCTACGAGCTTCTCGTGCTCCTTTCCGCGGAAACTCGC
JMFN043A06+ GATCAAACCGCCCCTGGCTTTAGCTACGAGCTTCTCGTGCTCCTTTCCGCGGAAACTCGC
rJMSF036E14- GATCAAACCGCCCCTGGCTTTAGCTACGAGCTTCTCGTGCTCCTTTCCGCGGAAACTCGC
JMSF036E14+ GATCAAACCGCCCCTGGCTTTAGCTACGAGCTTCTCGTGCTCCTTTCCGCGGAAACTCGC
JMFN039C05+ GATCAAACCGCCCCTGGCTTTAGCTACGAGCTTCTCGTGCTCCTTTCCGCGGAAACTCGC
rJMSF029J24- GATCAAACCGCCCCTGGCTTTAGCTACGAGCTTCTCGTGCTCCTTTCCGCGGAAACTCGC
JMSF048K21+ GATCAAACCGCCCCTGGCTTTAGCTACGAGCTTCTCGTGCTCCTTTCCGCGGAAACTCGC
rJMSF048K21- GATCAAACCGCCCCTGGCTTTAGCTACGAGCTTCTCGTGCTCCTTTCCGCGGAAACTCGC
____________________________________________________________
consensus GATCAAACCGCCCCTGGCTTTAGCTACGAGCTTCTCGTGCTCCTTTCCGCGGAAACTCGC
. : . : . : . : . : . :
JMSF029J24+ CCAGTTTGTGGCTTTCGAAGGCGGCGGAGGAAGATAAACCGCCTTGGTGGCGGTGGAAAC
JMFN043A06+ CCAGTTTGTGGCTTTCGAAGGCGGCGGAGGAAGATAAACCGCCTTGGTGGCGGTGGAAAC
rJMSF036E14- CCAGTTTGTGGCTTTCGAAGGCGGCGGAGGAAGATAAACCGCCTTGGTGGCGGTGGAAAC
JMSF036E14+ CCAGTTTGTGGCTTTCGAAGGCGGCGGAGGAAGATAAACCGCCTTGGTGGCGGTGGAAAC
JMFN039C05+ CCAGTTTGTGGCTTTCGAAGGCGGCGGAGGAAGATAAACCGCCTTGGTGGCGGTGGAAAC
rJMSF029J24- CCAGTTTGTGGCTTTCGAAGGCGGCGGAGGAAGATAAACCGCCTTGGTGGCGGTGGAAAC
JMSF048K21+ CCAGTTTGTGGCTTTCGAAGGCGGCGGAGGAAGATAAACCGCCTTGGTGGCGGTGGAAAC
rJMSF048K21- CCAGTTTGTGGCTTTCGAAGGCGGCGGAGGAAGATAAACCGCCTTGGTGGCGGTGGAAAC
____________________________________________________________
consensus CCAGTTTGTGGCTTTCGAAGGCGGCGGAGGAAGATAAACCGCCTTGGTGGCGGTGGAAAC
. : . : . : . : . : . :
JMSF029J24+ GGCGGCGGAGGGGGTTGCTGGCCACCATGAAAGGGAGGCCATTGCTCGCTGCTCAGCTTG
JMFN043A06+ GGCGGCGGAGGGGGTTGCTGGCCACCATGAAAGGGAGGCCATTGCTCGCTGCTCAGCTTG
rJMSF036E14- GGCGGCGGAGGGGGTTGCTGGCCACCATGAAAGGGAGGCCATTGCTCGCTGCTCAGCTTG
JMSF036E14+ GGCGGCGGAGGGGGTTGCTGGCCACCATGAAAGGGAGGCCATTGCTCGCTGCTCAGCTTG
JMFN039C05+ GGCGGCGGAGGGGGTTGCTGGCCACCATGAAAGGGAGGCCATTGCTCGCTGCTCAGCTTG
rJMSF029J24- GGCGGCGGAGGGGGTTGCTGGCCACCATGAAAGGGAGGCCATTGCTCGCTGCTCAGCTTG
JMSF048K21+ GGCGGCGGAGGGGGTTGCTGGCCACCATGAAAGGGAGGCCATTGCTCGCTGCTCAGCTTG
rJMSF048K21- GGCGGCGGAGGGGGTTGCTGGCCACCATGAAAGGGAGGCCATTGCTCGCTGCTCAGCTTG
____________________________________________________________
consensus GGCGGCGGAGGGGGTTGCTGGCCACCATGAAAGGGAGGCCATTGCTCGCTGCTCAGCTTG
. : . : . : . : . : . :
JMSF029J24+ GCAGATAAGGTGAAGATTGTGAGTTCTACTCACGCGCCCCGCTCAAACTCTC
JMFN043A06+ GCAGATAAGGTGAAGATTGTGAGTTCTA
rJMSF036E14- GCAGATAAGGTGAAGATTGTGAGTTCTACTCACGCGCCCCGCTCAAACTCT
JMSF036E14+ GCAGATAAGGTGAAGATTGTGAGTTCTACTCACGCGCCCCGCTCAAACTCT
JMFN039C05+ GCAGATAAGGTGAAGATTGTGAGTTCTACTCAC
rJMSF029J24- GCAGATAAGGTGAAGATTGTGAGTTCTACTCACGCGCCCCGCTCAAACTCTC
JMSF048K21+ GCAGATAAGGTGAAGATTGTGAGTTCTACTCACGCGCCCCGCTCAAACTCTCCACTTCTC
rJMSF048K21- GCAGATAAGGTGAAGATTGTGAGTTCTACTCACGCGCCCCGCTCAAACTCTCCACTTCTC
____________________________________________________________
consensus GCAGATAAGGTGAAGATTGTGAGTTCTACTCACGCGCCCCGCTCAAACTCTCCACTTCTC