| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF039D24 | Sequence | 692 | 007227 (4) | ref|XP_006348561.1| | 4e-73 | PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Solanum tuberosum] | 765 | 007227 (4) | ref|XP_006348561.1| | 3e-83 | PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Solanum tuberosum] |
| JMSF048B03 | Sequence | 551 | 007227 (4) | ref|XP_006348561.1| | 5e-38 | PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Solanum tuberosum] | 766 | 007227 (4) | ref|XP_006348561.1| | 2e-78 | PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF048B03- TGCGAATACACTACCCTTGAGCCGCAGCTTCGGTCG
____________________________________________________________
consensus TGCGAATACACTACCCTTGAGCCGCAGCTTCGGTCG
. : . : . : . : . : . :
JMSF048B03- AGCCAAGAGAGAGAGAGAGAGAGAGATGTGGAGAAGATTTTCGACGCAGCTCCGAACGCT
JMSF039D24- AGAGAGAGAGAGAGAGAGATGTGGAGAAGATTTTCGACGCAGCTCCGAACGCT
____________________________________________________________
consensus AGCCAAGAGAGAGAGAGAGAGAGAGATGTGGAGAAGATTTTCGACGCAGCTCCGAACGCT
. : . : . : . : . : . :
JMSF048B03- ATACCCGCCTCCCTCCTCCGCCGTCAAACCCAACCATATCGCAGCGGCATCCACCACTAC
JMSF039D24- ATACCCGCCTCCCTCCTCCGCCGTCAAACCCAACCATATCGCAGCGGCATCCACCACTAC
____________________________________________________________
consensus ATACCCGCCTCCCTCCTCCGCCGTCAAACCCAACCATATCGCAGCGGCATCCACCACTAC
. : . : . : . : . : . :
JMSF048B03- CCATCCGTCTACTGCCTCTGGAAATGTTGATTCGGGGAAGTGGCGTGCACTTGGTCATAA
JMSF039D24- CCATCCGTCTACTGCCTCTGGAAATGTTGATTCGGGGAAGTGGCGTGCACTTGGTCATAA
rJMSF039D24+ CCTCTGGAAATGTTGATTCGGGGAAGTGGCGTGCACTTGGTCATAA
____________________________________________________________
consensus CCATCCGTCTACTGCCTCTGGAAATGTTGATTCGGGGAAGTGGCGTGCACTTGGTCATAA
. : . : . : . : . : . :
JMSF048B03- CATTGGAACCAGAGAAGGGCTTCCTGTAGACTCTAAGAAAAATGGCGTTGCTTCTGTTTC
JMSF039D24- CATTGGAACCAGAGAAGGGCTTCCTGTAGACTCTAAGAAAAATGGCGTTGCTTCTGTTTC
rJMSF039D24+ CATTGGAACCAGAGAAGGGCTTCCTGTAGACTCTAAGAAAAATGGCGTTGCTTCTGTTTC
____________________________________________________________
consensus CATTGGAACCAGAGAAGGGCTTCCTGTAGACTCTAAGAAAAATGGCGTTGCTTCTGTTTC
. : . : . : . : . : . :
JMSF048B03- ATCGTGTTATATTGATCCTAGATCCAGTTTTTCAAAACTATCAACGATGGGGCCTATGTT
JMSF039D24- ATCGTGTTATATTGATCCTAGATCCAGTTTTTCAAAACTATCAACGATGGGGCCTATGTT
rJMSF039D24+ ATCGTGTTATATTGATCCTAGATCCAGTTTTTCAAAACTATCAACGATGGGGCCTATGTT
rJMSF048B03+ ATCCTAGATCCAGTTTTTCAAAACTATCAACGATGGGGCCTATGTT
____________________________________________________________
consensus ATCGTGTTATATTGATCCTAGATCCAGTTTTTCAAAACTATCAACGATGGGGCCTATGTT
. : . : . : . : . : . :
JMSF048B03- TCCTAGAAGATTCATTGCAACTATAGGAACCCCTTTGGATACTGTTTCTCAAGATGCTTC
JMSF039D24- TCCTAGAAGATTCATTGCAACTATAGGAACCCCTTTGGATACTGTTTCTCAAGATGCTTC
rJMSF039D24+ TCCTAGAAGATTCATTGCAACTATAGGAACCCCTTTGGATACTGTTTCTCAAGATGCTTC
rJMSF048B03+ TCCTAGAAGATTCATTGCAACTATAGGAACCCCTTTGGATACTGTTTCTCAAGATGCTTC
____________________________________________________________
consensus TCCTAGAAGATTCATTGCAACTATAGGAACCCCTTTGGATACTGTTTCTCAAGATGCTTC
. : . : . : . : . : . :
JMSF048B03- AACTTCTGACTCTCTGGTGACTCCACGTATCAAGTTTAAGAGGCTTGATAAGACAGCAAA
JMSF039D24- AACTTCTGACTCTCTGGTGACTCCACGTATCAAGTTTAAGAGGCTTGATAAGACAGCAAA
rJMSF039D24+ AACTTCTGACTCTCTGGTGACTCCACGTATCAAGTTTAAGAGGCTTGATAAGACAGCAAA
rJMSF048B03+ AACTTCTGACTCTCTGGTGACTCCACGTATCAAGTTTAAGAGGCTTGATAAGACAGCAAA
____________________________________________________________
consensus AACTTCTGACTCTCTGGTGACTCCACGTATCAAGTTTAAGAGGCTTGATAAGACAGCAAA
. : . : . : . : . : . :
JMSF048B03- GCACATAATGCAGATTCTCGATAAGGAAGCAGTTGAAGAAGTGAGGACACAGAAAGAGAT
JMSF039D24- GCACATAATGCAGATTCTTGATAAGGAAGCAGTTGAAGAAGTGAGGACACAGAAAGAGAT
rJMSF039D24+ GCACATAATGCAGATTCTTGATAAGGAAGCAGTTGAAGAAGTGAGGACACAGAAAGAGAT
rJMSF048B03+ GCACATAATGCAGATTCTCGATAAGGAAGCAGTTGAAGAAGTGAGGACACAGAAAGAGAT
____________________________________________________________
consensus GCACATAATGCAGATTCTTGATAAGGAAGCAGTTGAAGAAGTGAGGACACAGAAAGAGAT
. : . : . : . : . : . :
JMSF048B03- ACCTGATATAAGGCCTGGTTATATTTTACAGCTCA
JMSF039D24- ACCTGATATAAGGCCTGGTTATATTTTACAGCTCAAAGTGGAAATACCAGAAAATAAGAG
rJMSF039D24+ ACCTGATATAAGGCCTGGTTATATTTTACAGCTCAAAGTGGAAATACCAGAAAATAAGAG
rJMSF048B03+ ACCTGATATAAGGCCTGGTTATATTTTACAGCTCAAAGTGGAAATACCAGAAAATAAGAG
____________________________________________________________
consensus ACCTGATATAAGGCCTGGTTATATTTTACAGCTCAAAGTGGAAATACCAGAAAATAAGAG
. : . : . : . : . : . :
JMSF039D24- ACGTGTTTCAATAATCAAAGGAATAGTAATAGCAAGACGAAATGCTGGTTTGAATACTAC
rJMSF039D24+ ACGTGTTTCAATAATCAAAGGAATAGTAATAGCAAGACGAAATGCTGGTTTGAATACTAC
rJMSF048B03+ ACGTGTTTCAATAATCAAAGGAATAGTAATAGCAAGACGAAATGCTGGTTTGAATACTAC
____________________________________________________________
consensus ACGTGTTTCAATAATCAAAGGAATAGTAATAGCAAGACGAAATGCTGGTTTGAATACTAC
. : . : . : . : . : . :
JMSF039D24- ATTCAGATTAAGAAGACTTGTTGCAGGGGTTGGTGTTGAATCCCTCTTCCATCTATACTC
rJMSF039D24+ ATTCAGATTAAGAAGACTTGTTGCAGGGGTTGGTGTTGAATCCCTCTTCCATCTATACTC
rJMSF048B03+ ATTCAGATTAAGAAGACTTGTTGCAGGGGTTGGTGTTGAATCCCTCTTCCATCTATACTC
____________________________________________________________
consensus ATTCAGATTAAGAAGACTTGTTGCAGGGGTTGGTGTTGAATCCCTCTTCCATCTATACTC
. : . : . : . : . : . :
JMSF039D24- TCCCAATATAAAGGA
rJMSF039D24+ TCCCAATATAAAGGAGGTGAAGGTGGTGGACAAGAAGAAGGTGAGGAGGGCCAAGCTGTA
rJMSF048B03+ TCCCAATATAAAGGAGGTGAAGGTGGTGGACAAGAAGAAGGTGAGGAGGGCCAAGCTGTA
____________________________________________________________
consensus TCCCAATATAAAGGAGGTGAAGGTGGTGGACAAGAAGAAGGTGAGGAGGGCCAAGCTGTA
. : . : . : . : . : . :
rJMSF039D24+ TTATCTCAGGGATAGAATGAATGCATTGAAGAAACAATAAACAAGAAGTCTAGATAGTGG
rJMSF048B03+ TTATCTCAGGGATAGAATGAATGCATTGAAGAAACAATAAACAAGAAGTCTAGATAGTGG
____________________________________________________________
consensus TTATCTCAGGGATAGAATGAATGCATTGAAGAAACAATAAACAAGAAGTCTAGATAGTGG
. : . : . : . : . : . :
rJMSF039D24+ GATGGAAGAAGGTATGTAGAAAGGTTCAGAAATTTATTTCATTAGAAGCAGCTCTTGAAC
rJMSF048B03+ GATGGAAGAAGGTATGTAGAAAGGTTCAGAAATTTATTTCATTAGAAGCAGCTCTTGAAC
____________________________________________________________
consensus GATGGAAGAAGGTATGTAGAAAGGTTCAGAAATTTATTTCATTAGAAGCAGCTCTTGAAC
. : . : . : . : . : . :
rJMSF039D24+ AGTTGAACTTCCTATATCCCACAAAAA
rJMSF048B03+ AGTTGAACTTCCTATATCCCACAAAAATTGTTATGTTTGATAAAACACATGGGATTTACA
____________________________________________________________
consensus AGTTGAACTTCCTATATCCCACAAAAATTGTTATGTTTGATAAAACACATGGGATTTACA
. : . : . : . : . : . :
rJMSF048B03+ TTACTGTATTGGTTGCGCTTGATTAGTAACAATTAGTTCCATTCTTGACCCTTCATAAAT
____________________________________________________________
consensus TTACTGTATTGGTTGCGCTTGATTAGTAACAATTAGTTCCATTCTTGACCCTTCATAAAT
. : . : . : . : . : . :
rJMSF048B03+ GCGGTATTCTCTTTTGCTATCCTTAGTACTGGAGTATGCCAGTATTCGTTAAAATAGAAG
____________________________________________________________
consensus GCGGTATTCTCTTTTGCTATCCTTAGTACTGGAGTATGCCAGTATTCGTTAAAATAGAAG