Contig 007225:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022M06Sequence655009549 (4)emb|CDP15053.1|2e-108unnamed protein product [Coffea canephora]744007225 (3)ref|XP_011074284.1|2e-127PREDICTED: tubulin gamma-1 chain [Sesamum indicum]
JMSF047M18Sequence698009549 (4)emb|CDP15053.1|4e-117unnamed protein product [Coffea canephora]750007225 (3)ref|XP_011074284.1|3e-122PREDICTED: tubulin gamma-1 chain [Sesamum indicum]
JMSF047P04Sequence666009549 (4)emb|CDP15053.1|5e-119unnamed protein product [Coffea canephora]745007225 (3)ref|XP_011074284.1|2e-127PREDICTED: tubulin gamma-1 chain [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022M06+ CAAGACAACTGTTCTTGATGTGATGAGAAGACTTCTTCAGACTAAGA
rJMSF047P04+ CAAGACAACTGTTCTTGATGTGATGAGAAGACTTCTTCAGACTAAGA
rJMSF047M18+ ATGTGATGAGAAGACTTTTTCAGACTAAGA
                      ____________________________________________________________
consensus CAAGACAACTGTTCTTGATGTGATGAGAAGACTTCTTCAGACTAAGA
 
. : . : . : . : . : . :
rJMSF022M06+ ATATCATGGTTTCCTCTCATGCTCGAACAAAGGAAGCTAGTCAGGCAAAGTATATATCAA
rJMSF047P04+ ATATCATGGTTTCCTCTCATGCTCGAACAAAGGAAGCTAGTCAGGCAAAGTATATATCAA
rJMSF047M18+ ATATCATGGTTTCCTCTCATGCTCGAACAAAGGAAGCTAGTCAGGCAAAGTATATATCAA
                      ____________________________________________________________
consensus ATATCATGGTTTCCTCTCATGCTCGAACAAAGGAAGCTAGTCAGGCAAAGTATATATCAA
 
. : . : . : . : . : . :
rJMSF022M06+ TATTAAACATTATTCAAGGTGAAGTAGATCCAACACAGGTCCATGAAAGCCTGCAGAGAA
rJMSF047P04+ TATTAAACATTATTCAAGGTGAAGTAGATCCAACACAGGTCCATGAAAGCCTGCAGAGAA
rJMSF047M18+ TATTAAACATTATTCAAGGTGAAGTAGATCCAACACAGGTCCATGAAAGCCTGCAGAGAA
                      ____________________________________________________________
consensus TATTAAACATTATTCAAGGTGAAGTAGATCCAACACAGGTCCATGAAAGCCTGCAGAGAA
 
. : . : . : . : . : . :
rJMSF022M06+ TTCGTGAAAGGAAGCTTGTCAACTTTATTGAGTGGGGCCCTGCTAGCATCCAGGTTGCTT
rJMSF047P04+ TTCGTGAAAGGAAGCTTGTCAACTTTATTGAGTGGGGCCCTGCTAGCATCCAGGTTGCTT
rJMSF047M18+ TTCGTGAAAGGAAGCTTGTCAACTTTATTGAGTGGGGCCCTGCTAGCATCCAGGTTGCTT
                      ____________________________________________________________
consensus TTCGTGAAAGGAAGCTTGTCAACTTTATTGAGTGGGGCCCTGCTAGCATCCAGGTTGCTT
 
. : . : . : . : . : . :
rJMSF022M06+ TATCTAGAAAGTCACCCTATGTCCAAACTGCTCACAGGGTTAGCGGTCTTATGCTTGCAA
rJMSF047P04+ TATCTAGAAAGTCACCCTATGTCCAAACTGCTCACAGGGTTAGCGGTCTTATGCTTGCAA
rJMSF047M18+ TATCTAGAAAGTCACCCTATGTCCAAACTGCTCACAGGGTTAGCGGTCTTATGCTTGCAA
                      ____________________________________________________________
consensus TATCTAGAAAGTCACCCTATGTCCAAACTGCTCACAGGGTTAGCGGTCTTATGCTTGCAA
 
. : . : . : . : . : . :
rJMSF022M06+ GCCATACAGGCATCCGCCACTTATTTACCAAGTGCTTGAGCCAATATGAGAAATTGAGAA
rJMSF047P04+ GCCATACAGGCATCCGCCACTTATTTACCAAGTGCTTGAGCCAATATGAGAAATTGAGAA
rJMSF047M18+ GCCATACAGGCATCCGCCACTTATTTACCAAGTGCTTGAGCCAATATGAGAAATTGAGAA
                      ____________________________________________________________
consensus GCCATACAGGCATCCGCCACTTATTTACCAAGTGCTTGAGCCAATATGAGAAATTGAGAA
 
. : . : . : . : . : . :
rJMSF022M06+ AGAGACAGGCATTTCTTGACAACTACAGAAATCATCCCATGTTTGCTGACAATGATCTGT
rJMSF047P04+ AGAGACAGGCATTTCTTGACAACTACAGAAATCATCCCATGTTTGCTGACAATGATCTGT
rJMSF047M18+ AGAGACAGGCATTTCTTGACAACTACAGAAATCATCCCATGTTTGCTGACAATGATCTGT
                      ____________________________________________________________
consensus AGAGACAGGCATTTCTTGACAACTACAGAAATCATCCCATGTTTGCTGACAATGATCTGT
 
. : . : . : . : . : . :
rJMSF022M06+ CAGAATTTGATGAATCTAGAGATGTGATTGAGAGTCTTGTTGACGAGTACAAGGCTTGTG
rJMSF047P04+ CAGAATTTGATGAATCTAGAGATGTGATTGAGAGTCTTGTTGACGAGTACAAGGCTTGTG
rJMSF047M18+ CAGAATTTGATGAATCTAGAGATGTGATTGAGAGTCTTGTTGACGAGTACAAGGCTTGTG
                      ____________________________________________________________
consensus CAGAATTTGATGAATCTAGAGATGTGATTGAGAGTCTTGTTGACGAGTACAAGGCTTGTG
 
. : . : . : . : . : . :
rJMSF022M06+ AATCCCCTGATTACATCAAATGGGGAATCGAGGATCCGGATCATATTCTGACTGGTGAAG
rJMSF047P04+ AATCCCCTGATTACATCAAATGGGGAATCGAGGATCCGGATCATATTCTGACTGGTGAAG
rJMSF047M18+ AATCCCCTGATTACATCAAATGGGGAATCGAGGATCCGGATCATATTCTGACTGGTGAAG
                      ____________________________________________________________
consensus AATCCCCTGATTACATCAAATGGGGAATCGAGGATCCGGATCATATTCTGACTGGTGAAG
 
. : . : . : . : . : . :
rJMSF022M06+ GGAATGCCAGTGGAGCAGTTGATCCAAGGTTAGCTGTGTGAACAGGATGACCTTCGAGTT
rJMSF047P04+ GGAATGCCAGTGGAGCAGTTGATCCAAGGTTAGCTGTGTGAACAGGATGACCTTCGAGTT
rJMSF047M18+ GGAATGCCAGTGGAGCAGTTGATCCAAGGTTAGCTGTGTGAACAGGATGACCTTCGAGTT
                      ____________________________________________________________
consensus GGAATGCCAGTGGAGCAGTTGATCCAAGGTTAGCTGTGTGAACAGGATGACCTTCGAGTT
 
. : . : . : . : . : . :
rJMSF022M06+ GACAAAGAACACAGTTAATCGTGTGTCATGTAATTATCCCCTGTTTGGTTTGCAGTTCTG
rJMSF047P04+ GACAAAGAACACAGTTAATCGTGTGTCATGTAATTATCCCCTGTTTGGTTTGCAGTTCTG
rJMSF047M18+ GACAAAGAACACAGTTAATCGTGTGTCATGTAATTATCCCCTGTTTGGTTTGCAGTTCTG
                      ____________________________________________________________
consensus GACAAAGAACACAGTTAATCGTGTGTCATGTAATTATCCCCTGTTTGGTTTGCAGTTCTG
 
. : . : . : . : . : . :
rJMSF022M06+ TACCTGTCTGTTCTTTCCTTGGGATATTACCTTCATATTGTAACCTTACAGCTTTGTATG
rJMSF047P04+ TACCTGTCTGTTCTTTCCTTGGGATATTACCTTCATATTGTAACCTTACAGCTTTGTATG
rJMSF047M18+ TACCTGTCTGTTCTTTCCTTGGGATATTACCTTCATATTGTAACCTTACAGCTTTGTATG
                      ____________________________________________________________
consensus TACCTGTCTGTTCTTTCCTTGGGATATTACCTTCATATTGTAACCTTACAGCTTTGTATG
 
. : . : . : . : . : . :
rJMSF022M06+ AAGAATCCCTTGAAGTTTTAGGCT
rJMSF047P04+ AAGAATCCCTTGAAGTTTTAGGCT
rJMSF047M18+ AAGAATCCCTTGAAGTTTTAGGCTTGTAAAAATTGTGTTGATGGTATTCTAATGGGTGAT
                      ____________________________________________________________
consensus AAGAATCCCTTGAAGTTTTAGGCTTGTAAAAATTGTGTTGATGGTATTCTAATGGGTGAT