| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF022M06 | Sequence | 655 | 009549 (4) | emb|CDP15053.1| | 2e-108 | unnamed protein product [Coffea canephora] | 744 | 007225 (3) | ref|XP_011074284.1| | 2e-127 | PREDICTED: tubulin gamma-1 chain [Sesamum indicum] |
| JMSF047M18 | Sequence | 698 | 009549 (4) | emb|CDP15053.1| | 4e-117 | unnamed protein product [Coffea canephora] | 750 | 007225 (3) | ref|XP_011074284.1| | 3e-122 | PREDICTED: tubulin gamma-1 chain [Sesamum indicum] |
| JMSF047P04 | Sequence | 666 | 009549 (4) | emb|CDP15053.1| | 5e-119 | unnamed protein product [Coffea canephora] | 745 | 007225 (3) | ref|XP_011074284.1| | 2e-127 | PREDICTED: tubulin gamma-1 chain [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF022M06+ CAAGACAACTGTTCTTGATGTGATGAGAAGACTTCTTCAGACTAAGA
rJMSF047P04+ CAAGACAACTGTTCTTGATGTGATGAGAAGACTTCTTCAGACTAAGA
rJMSF047M18+ ATGTGATGAGAAGACTTTTTCAGACTAAGA
____________________________________________________________
consensus CAAGACAACTGTTCTTGATGTGATGAGAAGACTTCTTCAGACTAAGA
. : . : . : . : . : . :
rJMSF022M06+ ATATCATGGTTTCCTCTCATGCTCGAACAAAGGAAGCTAGTCAGGCAAAGTATATATCAA
rJMSF047P04+ ATATCATGGTTTCCTCTCATGCTCGAACAAAGGAAGCTAGTCAGGCAAAGTATATATCAA
rJMSF047M18+ ATATCATGGTTTCCTCTCATGCTCGAACAAAGGAAGCTAGTCAGGCAAAGTATATATCAA
____________________________________________________________
consensus ATATCATGGTTTCCTCTCATGCTCGAACAAAGGAAGCTAGTCAGGCAAAGTATATATCAA
. : . : . : . : . : . :
rJMSF022M06+ TATTAAACATTATTCAAGGTGAAGTAGATCCAACACAGGTCCATGAAAGCCTGCAGAGAA
rJMSF047P04+ TATTAAACATTATTCAAGGTGAAGTAGATCCAACACAGGTCCATGAAAGCCTGCAGAGAA
rJMSF047M18+ TATTAAACATTATTCAAGGTGAAGTAGATCCAACACAGGTCCATGAAAGCCTGCAGAGAA
____________________________________________________________
consensus TATTAAACATTATTCAAGGTGAAGTAGATCCAACACAGGTCCATGAAAGCCTGCAGAGAA
. : . : . : . : . : . :
rJMSF022M06+ TTCGTGAAAGGAAGCTTGTCAACTTTATTGAGTGGGGCCCTGCTAGCATCCAGGTTGCTT
rJMSF047P04+ TTCGTGAAAGGAAGCTTGTCAACTTTATTGAGTGGGGCCCTGCTAGCATCCAGGTTGCTT
rJMSF047M18+ TTCGTGAAAGGAAGCTTGTCAACTTTATTGAGTGGGGCCCTGCTAGCATCCAGGTTGCTT
____________________________________________________________
consensus TTCGTGAAAGGAAGCTTGTCAACTTTATTGAGTGGGGCCCTGCTAGCATCCAGGTTGCTT
. : . : . : . : . : . :
rJMSF022M06+ TATCTAGAAAGTCACCCTATGTCCAAACTGCTCACAGGGTTAGCGGTCTTATGCTTGCAA
rJMSF047P04+ TATCTAGAAAGTCACCCTATGTCCAAACTGCTCACAGGGTTAGCGGTCTTATGCTTGCAA
rJMSF047M18+ TATCTAGAAAGTCACCCTATGTCCAAACTGCTCACAGGGTTAGCGGTCTTATGCTTGCAA
____________________________________________________________
consensus TATCTAGAAAGTCACCCTATGTCCAAACTGCTCACAGGGTTAGCGGTCTTATGCTTGCAA
. : . : . : . : . : . :
rJMSF022M06+ GCCATACAGGCATCCGCCACTTATTTACCAAGTGCTTGAGCCAATATGAGAAATTGAGAA
rJMSF047P04+ GCCATACAGGCATCCGCCACTTATTTACCAAGTGCTTGAGCCAATATGAGAAATTGAGAA
rJMSF047M18+ GCCATACAGGCATCCGCCACTTATTTACCAAGTGCTTGAGCCAATATGAGAAATTGAGAA
____________________________________________________________
consensus GCCATACAGGCATCCGCCACTTATTTACCAAGTGCTTGAGCCAATATGAGAAATTGAGAA
. : . : . : . : . : . :
rJMSF022M06+ AGAGACAGGCATTTCTTGACAACTACAGAAATCATCCCATGTTTGCTGACAATGATCTGT
rJMSF047P04+ AGAGACAGGCATTTCTTGACAACTACAGAAATCATCCCATGTTTGCTGACAATGATCTGT
rJMSF047M18+ AGAGACAGGCATTTCTTGACAACTACAGAAATCATCCCATGTTTGCTGACAATGATCTGT
____________________________________________________________
consensus AGAGACAGGCATTTCTTGACAACTACAGAAATCATCCCATGTTTGCTGACAATGATCTGT
. : . : . : . : . : . :
rJMSF022M06+ CAGAATTTGATGAATCTAGAGATGTGATTGAGAGTCTTGTTGACGAGTACAAGGCTTGTG
rJMSF047P04+ CAGAATTTGATGAATCTAGAGATGTGATTGAGAGTCTTGTTGACGAGTACAAGGCTTGTG
rJMSF047M18+ CAGAATTTGATGAATCTAGAGATGTGATTGAGAGTCTTGTTGACGAGTACAAGGCTTGTG
____________________________________________________________
consensus CAGAATTTGATGAATCTAGAGATGTGATTGAGAGTCTTGTTGACGAGTACAAGGCTTGTG
. : . : . : . : . : . :
rJMSF022M06+ AATCCCCTGATTACATCAAATGGGGAATCGAGGATCCGGATCATATTCTGACTGGTGAAG
rJMSF047P04+ AATCCCCTGATTACATCAAATGGGGAATCGAGGATCCGGATCATATTCTGACTGGTGAAG
rJMSF047M18+ AATCCCCTGATTACATCAAATGGGGAATCGAGGATCCGGATCATATTCTGACTGGTGAAG
____________________________________________________________
consensus AATCCCCTGATTACATCAAATGGGGAATCGAGGATCCGGATCATATTCTGACTGGTGAAG
. : . : . : . : . : . :
rJMSF022M06+ GGAATGCCAGTGGAGCAGTTGATCCAAGGTTAGCTGTGTGAACAGGATGACCTTCGAGTT
rJMSF047P04+ GGAATGCCAGTGGAGCAGTTGATCCAAGGTTAGCTGTGTGAACAGGATGACCTTCGAGTT
rJMSF047M18+ GGAATGCCAGTGGAGCAGTTGATCCAAGGTTAGCTGTGTGAACAGGATGACCTTCGAGTT
____________________________________________________________
consensus GGAATGCCAGTGGAGCAGTTGATCCAAGGTTAGCTGTGTGAACAGGATGACCTTCGAGTT
. : . : . : . : . : . :
rJMSF022M06+ GACAAAGAACACAGTTAATCGTGTGTCATGTAATTATCCCCTGTTTGGTTTGCAGTTCTG
rJMSF047P04+ GACAAAGAACACAGTTAATCGTGTGTCATGTAATTATCCCCTGTTTGGTTTGCAGTTCTG
rJMSF047M18+ GACAAAGAACACAGTTAATCGTGTGTCATGTAATTATCCCCTGTTTGGTTTGCAGTTCTG
____________________________________________________________
consensus GACAAAGAACACAGTTAATCGTGTGTCATGTAATTATCCCCTGTTTGGTTTGCAGTTCTG
. : . : . : . : . : . :
rJMSF022M06+ TACCTGTCTGTTCTTTCCTTGGGATATTACCTTCATATTGTAACCTTACAGCTTTGTATG
rJMSF047P04+ TACCTGTCTGTTCTTTCCTTGGGATATTACCTTCATATTGTAACCTTACAGCTTTGTATG
rJMSF047M18+ TACCTGTCTGTTCTTTCCTTGGGATATTACCTTCATATTGTAACCTTACAGCTTTGTATG
____________________________________________________________
consensus TACCTGTCTGTTCTTTCCTTGGGATATTACCTTCATATTGTAACCTTACAGCTTTGTATG
. : . : . : . : . : . :
rJMSF022M06+ AAGAATCCCTTGAAGTTTTAGGCT
rJMSF047P04+ AAGAATCCCTTGAAGTTTTAGGCT
rJMSF047M18+ AAGAATCCCTTGAAGTTTTAGGCTTGTAAAAATTGTGTTGATGGTATTCTAATGGGTGAT
____________________________________________________________
consensus AAGAATCCCTTGAAGTTTTAGGCTTGTAAAAATTGTGTTGATGGTATTCTAATGGGTGAT