Contig 007224:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS055H06Sequence447007224 (4)ref|NP_001234845.1|4e-44Prf interactor 30137 [Solanum lycopersicum] gb|AAV80420.1| Prf interactor 30137
JMFS055H07Sequence447007224 (4)ref|NP_001234845.1|4e-44Prf interactor 30137 [Solanum lycopersicum] gb|AAV80420.1| Prf interactor 30137
JMSF039L08Sequence673011777 (10)ref|XP_011094904.1|52.0PREDICTED: uncharacterized protein LOC105174481 [Sesamum indicum]895007224 (4)ref|XP_009597648.1|3e-78PREDICTED: transcription factor EMB1444-like [Nicotiana tomentosiformis]
JMSF046G10Sequence786011777 (10)ref|XP_009785130.1|7e-29PREDICTED: transcription factor bHLH157-like [Nicotiana sylvestris]544007224 (4)ref|XP_006341000.1|3e-21PREDICTED: transcription factor EMB1444-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF039L08+                                         ACAGAGTCATTCCTTACCTCATTAGGAAT
                      ____________________________________________________________
consensus                                            ACAGAGTCATTCCTTACCTCATTAGGAAT
 
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rJMSF039L08+          ACCCNTTTTNTGCCTCCCAAAGGAGAAATCACATGGTGCAGGGTGCTTTGGTGGGAGGGA
                      ____________________________________________________________
consensus             ACCCNTTTTNTGCCTCCCAAAGGAGAAATCACATGGTGCAGGGTGCTTTGGTGGGAGGGA
 
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rJMSF039L08+          AAACAGAACCATGGAGCAGTCCTATATCTGCGTCTGTTGCCTCAGATATGAAGTCTTTAA
                      ____________________________________________________________
consensus             AAACAGAACCATGGAGCAGTCCTATATCTGCGTCTGTTGCCTCAGATATGAAGTCTTTAA
 
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rJMSF039L08+          CTAACTCTTCATTAGAATGCAGTATGGGTACAGTGGTTGAGGAGCAGCAGCAGAAAAAAC
                      ____________________________________________________________
consensus             CTAACTCTTCATTAGAATGCAGTATGGGTACAGTGGTTGAGGAGCAGCAGCAGAAAAAAC
 
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rJMSF039L08+          GTTCTAGATCCATGCATCATGCTGCAGAATCAGAGTGTCCTTATGCCAAGATGAAAAGGG
                      ____________________________________________________________
consensus             GTTCTAGATCCATGCATCATGCTGCAGAATCAGAGTGTCCTTATGCCAAGATGAAAAGGG
 
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rJMSF039L08+          CAAAGGTCTCTGATAGGCAGCCTAGACGGCCACGAGATAGGCAATTGATTCAGGATCGTT
                      ____________________________________________________________
consensus             CAAAGGTCTCTGATAGGCAGCCTAGACGGCCACGAGATAGGCAATTGATTCAGGATCGTT
 
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rJMSF039L08+          TAAAGGAGCTCCGAGAACTTGTCCCTAATAGTGCAAAATGCAGCATAGATGGTTTGCTAG
                      ____________________________________________________________
consensus             TAAAGGAGCTCCGAGAACTTGTCCCTAATAGTGCAAAATGCAGCATAGATGGTTTGCTAG
 
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rJMSF039L08+          ATAGGACAATAAAACACATGCTGTTCATGAAAAATGTTACTGATCAGGCTGATAAGCTGA
                      ____________________________________________________________
consensus             ATAGGACAATAAAACACATGCTGTTCATGAAAAATGTTACTGATCAGGCTGATAAGCTGA
 
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rJMSF039L08+          GGCAACAGGTTAAAAAAGAGGTTTTAACCGGAAAGAGTCTGAAGTCAAGTAAAGCAAAAG
JMFS055H06-                                TTTTAACCGGAAAGAGTCTGAAGTCAAGTAAAGCAAAAG
JMFS055H07-                                TTTTAACCGGAAAGAGTCTGAAGTCAAGTAAAGCAAAAG
rJMSF046G10+                    TAAAAAAGNGGTTTTNACCGGAAAGNGTNTGAAGTCNAGTAAAGCNAAAG
                      ____________________________________________________________
consensus             GGCAACAGGTTAAAAAAGAGGTTTTAACCGGAAAGAGTCTGAAGTCAAGTAAAGCAAAAG
 
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rJMSF039L08+          CTAATTATCAACCAGGGACAAGCTGGGCACTGGAATTGGGAAGTGATGAGCAGACATGCC
JMFS055H06-           CTAATTATCAACCAGGGACAAGCTGGGCACTGGAATTGGGAAGTGATGAGCAGACATGCC
JMFS055H07-           CTAATTATCAACCAGGGACAAGCTGGGCACTGGAATTGGGAAGTGATGAGCAGACATGCC
rJMSF046G10+          NTAATTNTCNACCCGGGNCNAGCTGGGCCCNGGAATTGGGAAGTGATGAGCNGACNTGCC
                      ____________________________________________________________
consensus             CTAATTATCAACCAGGGACAAGCTGGGCACTGGAATTGGGAAGTGATGAGCAGACATGCC
 
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rJMSF039L08+          CTATAATCGTGAAAGATCTCAACTATCCTGGATATATGCTTATAGAGATGCTGTGCAATG
JMFS055H06-           CTATAATCGTGAAAGATCTCAACTATCCTGGATATATGCTTATAGAGATGCTGTGCAATG
JMFS055H07-           CTATAATCGTGAAAGATCTCAACTATCCTGGATATATGCTTATAGAGATGCTGTGCAATG
rJMSF046G10+          CNATAATCGNGAAAGATNTCAACTNTCCCGGATATATGCTTATAGNGATGCTGNGCNANG
                      ____________________________________________________________
consensus             CTATAATCGTGAAAGATCTCAACTATCCTGGATATATGCTTATAGAGATGCTGTGCAATG
 
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rJMSF039L08+          ACCACAGTGGATTTCTTGACATTGCTGATGTTATTCACCGTCTGGAGCTGACGGTTTTGA
JMFS055H06-           ACCACAGTGGATTTCTTGACATTGCTGATGTTATTCACCGTCTGGAGCTGACGGTTTTGA
JMFS055H07-           ACCACAGTGGATTTCTTGACATTGCTGATGTTATTCACCGTCTGGAGCTGACGGTTTTGA
rJMSF046G10+          ACCCCNGNGGNTTTNTTGACNTTGNTGATGTTNTTCCCCNTCTGGAGCTGACGGTTTTGA
                      ____________________________________________________________
consensus             ACCACAGTGGATTTCTTGACATTGCTGATGTTATTCACCGTCTGGAGCTGACGGTTTTGA
 
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rJMSF039L08+          AGGGTGTGATGGAAAATCGCGTTGGTGGCACATGGGCCCGCTTTATTGTTGAGGCTTCAG
JMFS055H06-           AGGGTGTGATGGAAAATCGCGTTGGTGGCACATGGGCCCGCTTTATTGTTGAGGCTTCAG
JMFS055H07-           AGGGTGTGATGGAAAATCGCGTTGGTGGCACATGGGCCCGCTTTATTGTTGAGGCTTCAG
rJMSF046G10+          AGGGNGNGATGGAAAATCGCGTTGGNGGCNCNTGGGCCCNCTTTNTTGTTGNGGNTTCNG
                      ____________________________________________________________
consensus             AGGGTGTGATGGAAAATCGCGTTGGTGGCACATGGGCCCGCTTTATTGTTGAGGCTTCAG
 
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rJMSF039L08+          GGAACTTTCACAGACTGGATATCTTCTGGCCATTGATGCAGCTCCTACGGCGAAGCTCAA
JMFS055H06-           GGAACTTTCACAGACTGGATATCTTCTGGCCATTGATGCAGCTCCTACGGCGAAGCTCAA
JMFS055H07-           GGAACTTTCACAGACTGGATATCTTCTGGCCATTGATGCAGCTCCTACGGCGAAGCTCAA
rJMSF046G10+          GGAACTTTCCCNGNCTGGNTNTTTTNTGGCCCTTGATGCNGCTCCTNCGGNGAAGCTCAA
                      ____________________________________________________________
consensus             GGAACTTTCACAGACTGGATATCTTCTGGCCATTGATGCAGCTCCTACGGCGAAGCTCAA
 
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rJMSF039L08+          CTCGGATGTCAACCTAAATTTAGTGGTTCTGTAAAAAAA                     
JMFS055H06-           CTCGGATGTCAACCTAAATTTAGTGGTTCTGTAAAAAAACATAAATTGAGTGCGGTATGA
JMFS055H07-           CTCGGATGTCAACCTAAATTTAGTGGTTCTGTAAAAAAACATAAATTGAGTGCGGTATGA
rJMSF046G10+          CTCGGATGTCNACCTAAANTTAGNGGTTNTGTAAAAAAACNTAAATTGAGTGCGGTATGA
                      ____________________________________________________________
consensus             CTCGGATGTCAACCTAAATTTAGTGGTTCTGTAAAAAAACATAAATTGAGTGCGGTATGA
 
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JMFS055H06-           ACAACTGTGTATTTCTGGTTGTTATGATGTACCTGTTCCTCTTGTTAT            
JMFS055H07-           ACAACTGTGTATTTCTGGTTGTTATGATGTACCTGTTCCTCTTGTTAT            
rJMSF046G10+          ACNACTGNGTATTTNTGGNTGTTATGANGTACCNGTTCCTCTTGTTATAATCNTGAAAGT
                      ____________________________________________________________
consensus             ACAACTGTGTATTTCTGGTTGTTATGATGTACCTGTTCCTCTTGTTATAATCNTGAAAGT
 
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rJMSF046G10+          TTGGNGAAAACNNAACTGTTNTTAGTTTTTTTTTTTTTNAAAAAATATCATGTGTGGCTT
                      ____________________________________________________________
consensus             TTGGNGAAAACNNAACTGTTNTTAGTTTTTTTTTTTTTNAAAAAATATCATGTGTGGCTT