| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011C02 | Sequence | 636 | 007215 (6) | ref|XP_002297677.1| | 6e-42 | hypothetical protein POPTR_0001s03340g [Populus trichocarpa] gb|EEE82482.1| hypo | 727 | 023320 | ref|XP_011084642.1| | 109 | PREDICTED: uncharacterized protein LOC105166845, partial [Sesamum indicum] |
| JMFF040N11 | Sequence | 570 | 014226 | gb|KDP41945.1| | 2e-28 | hypothetical protein JCGZ_26963 [Jatropha curcas] | 795 | 007215 (6) | ref|XP_009615693.1| | 225 | PREDICTED: uncharacterized protein LOC104108378 [Nicotiana tomentosiformis] |
| JMSF043L04 | Sequence | 691 | 007215 (6) | ref|XP_009615693.1| | 247 | PREDICTED: uncharacterized protein LOC104108378 [Nicotiana tomentosiformis] | 751 | 007215 (6) | ref|XP_009615693.1| | 254 | PREDICTED: uncharacterized protein LOC104108378 [Nicotiana tomentosiformis] |
| JMSF048O13 | Sequence | 682 | 007215 (6) | ref|XP_009615693.1| | 241 | PREDICTED: uncharacterized protein LOC104108378 [Nicotiana tomentosiformis] | 716 | 007215 (6) | ref|XP_009615693.1| | 255 | PREDICTED: uncharacterized protein LOC104108378 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF040N11- TTTCTATTTCTTATTTANACATTACAGAGCATATTA
____________________________________________________________
consensus TTTCTATTTCTTATTTANACATTACAGAGCATATTA
. : . : . : . : . : . :
rJMFF040N11- CAAATAGCAAATAAACTCTAAGAACAAACACAATAGTGTTGCTGCATCTGGACACTGAAA
____________________________________________________________
consensus CAAATAGCAAATAAACTCTAAGAACAAACACAATAGTGTTGCTGCATCTGGACACTGAAA
. : . : . : . : . : . :
rJMFF040N11- TATAAATACAATTTTTATAGGACAAAAGAATGGCTCCATAATCCCACCATTCTTTCCTAA
rJMSF048O13- ATGGCTCCATAATCCCACCATTCTTTCCTAA
rJMSF043L04- ATGGCTCCATAATCCCACCATTCTTTCCTAA
____________________________________________________________
consensus TATAAATACAATTTTTATAGGACAAAAGAATGGCTCCATAATCCCACCATTCTTTCCTAA
. : . : . : . : . : . :
rJMFF040N11- CATTTTCTATATATTTCTAAGCAAAAATAAACCAACAAACAAATTATGAATCCTCTGTAC
rJMSF048O13- CATTTTCTATATATTTCTAAGCAAAAATAAACCAACAAACAAATTATGAATCCTCTGTAC
rJMSF043L04- CATTTTCTATATATTTCTAAGCAAAAATAAACCAACAAACAAATTATGAATCCTCTGTAC
____________________________________________________________
consensus CATTTTCTATATATTTCTAAGCAAAAATAAACCAACAAACAAATTATGAATCCTCTGTAC
. : . : . : . : . : . :
rJMFF040N11- CTTCACCCTCTACTGCATCATTCTCCTGTAACATGTCCATGAGCATGTTGATTTGGTTCT
JMSF043L04+ TGCATCATTCTCCTGTAACATGTCCATGAGCATGTTGATTTGGTTCT
JMSF048O13+ TCCTGTAACATGTCCATGAGCATGTTGATTTGGTTCT
rJMSF048O13- CTTCACCCTCTACTGCATCATTCTCCTGTAACATGTCCATGAGCATGTTGATTTGGTTCT
rJMSF043L04- CTTCACCCTCTACTGCATCATTCTCCTGTAACATGTCCATGAGCATGTTGATTTGGTTCT
____________________________________________________________
consensus CTTCACCCTCTACTGCATCATTCTCCTGTAACATGTCCATGAGCATGTTGATTTGGTTCT
. : . : . : . : . : . :
rJMFF040N11- GCAACATCGTGTTTTGCCTCTCGACATCAGCCCGCTTGCTCCTCTCGTCCAGCAGCTGCA
JMSF043L04+ GCAACATCGTGTTTTGCCTCTCGACATCAGCCCGCTTGCTCCTCTCGTCCAGCAGCTGCA
JMSF048O13+ GCAACATCGTGTTTTGCCTCTCGACATCAGCCCGCTTGCTCCTCTCGTCCAGCAGCTGCA
rJMSF048O13- GCAACATCGTGTTTTGCCTCTCGACATCAGCCCGCTTGCTCCTCTCGTCCAGCAGCTGCA
rJMSF043L04- GCAACATCGTGTTTTGCCTCTCGACATCAGCCCGCTTGCTCCTCTCGTCCAGCAGCTGCA
____________________________________________________________
consensus GCAACATCGTGTTTTGCCTCTCGACATCAGCCCGCTTGCTCCTCTCGTCCAGCAGCTGCA
. : . : . : . : . : . :
rJMFF040N11- GCTGCAGATGTTCCAAGCACCGTGAATCCGCTTCTAATTGCTCGTTCAGCCCATCAATTT
JMSF043L04+ GCTGCAGATGTTCCAAGCACCGTGAATCCGCTTCTAATTGCTCGTTCAGCCCATCAATTT
JMSF048O13+ GCTGCAGATGTTCCAAGCACCGTGAATCCGCTTCTAATTGCTCGTTCAGCCCATCAATTT
rJMSF048O13- GCTGCAGATGTTCCAAGCACCGTGAATCCGCTTCTAATTGCTCGTTCAGCCCATCAATTT
rJMSF043L04- GCTGCAGATGTTCCAAGCACCGTGAATCCGCTTCTAATTGCTCGTTCAGCCCATCAATTT
____________________________________________________________
consensus GCTGCAGATGTTCCAAGCACCGTGAATCCGCTTCTAATTGCTCGTTCAGCCCATCAATTT
. : . : . : . : . : . :
rJMFF040N11- CTCGGTCCTTTCTGTTCATTTCCTGTACGGCAATCCTACGCATGCTCTCAACAACATCCA
JMSF043L04+ CTCGGTCCTTTCTGTTCATTTCCTGTACGGCAATCCTACGCATGCTCTCAACAACATCCA
JMSF048O13+ CTCGGTCCTTTCTGTTCATTTCCTGTACGGCAATCCTACGCATGCTCTCAACAACATCCA
JMFF011C02+ TTTCTGTTCATTTCCTGTACGGCAATCCTACGCATGCTCTCAACAACATCCA
rJMSF048O13- CTCGGTCCTTTCTGTTCATTTCCTGTACGGCAATCCTACGCATGCTCTCAACAACATCCA
rJMSF043L04- CTCGGTCCTTTCTGTTCATTTCCTGTACGGCAATCCTACGCATGCTCTCAACAACATCCA
____________________________________________________________
consensus CTCGGTCCTTTCTGTTCATTTCCTGTACGGCAATCCTACGCATGCTCTCAACAACATCCA
. : . : . : . : . : . :
rJMFF040N11- CGTTTACAAGCTTCCGCTTCTTCCCAATAAGCCACCCTTTAGGGTAACTCGAGGAGTCGA
JMSF043L04+ CGTTTACAAGCTTCCGCTTCTTCCCAATAAGCCACTCTTTAGGGTAACTCGAGGAGTCGA
JMSF048O13+ CGTTTACAAGCTTCCGCTTCTTCCCAATAAGCCACTCTTTAGGGTAACTCGAGGAGTCGA
JMFF011C02+ CGTTTACAAGCTTCCGCTTCTTCCCAATAAGCCACCCTTTAGGGTAACTCGAGGAGTCGA
rJMSF048O13- CGTTTACAAGCTTCCGCTTCTTCCCAATAAGCCACTCTTTAGGGTAACTCGAGGAGTCGA
rJMSF043L04- CGTTTACAAGCTTCCGCTTCTTCCCAATAAGCCACTCTTTAGGGTAACTCGAGGAGTCGA
____________________________________________________________
consensus CGTTTACAAGCTTCCGCTTCTTCCCAATAAGCCACTCTTTAGGGTAACTCGAGGAGTCGA
. : . : . : . : . : . :
rJMFF040N11- AATCAGGTGGGGGTAACAACGACTCGGCTGATGGTCTTTTGCCACTCGCATTTGTTATGG
JMSF043L04+ AATCAGGTGGGGGTAACAACGACTCGGCTGATGGTCTTTTGCCACTCGCATTTGTTATGG
JMSF048O13+ AATCAGGTGGGGGTAACAACGACTCGGCTGATGGTCTTTTGCCACTCGCATTTGTTATGG
JMFF011C02+ AATCAGGTGGGGGTAACAACGACTCGGCTGATGGTCTTTTGCCACTCGCATTTGTTATGG
rJMSF048O13- AATCAGGTGGGGGTAACAACGACTCGGCTGATGGTCTTTTGCCACTCGCATTTGTTATGG
rJMSF043L04- AATCAGGTGGGGGTAACAACGACTCGGCTGATGGTCTTTTGCCACTCGCATTTGTTATGG
____________________________________________________________
consensus AATCAGGTGGGGGTAACAACGACTCGGCTGATGGTCTTTTGCCACTCGCATTTGTTATGG
. : . : . : . : . : . :
rJMFF040N11- GTTCCAATGGTTCAAACAAGGCCTTTCTGCGCTCAGAAAGAACAGAAAGTGCATCCACAT
JMSF043L04+ GTTCCAATGGTTCAAACAAGGCCTTTCTGCGCTCAGAAAGAACAGAAAGTGCATCCACAT
JMSF048O13+ GTTCCAATGGTTCAAACAAGGCCTTTCTGCGCTCAGAAAGAACAGAAAGTGCATCCACAT
JMFF011C02+ GTTCCAATGGTTCAAACAAGGCCTTTCTGCGCTCAGAAAGAACAGAAAGTGCATCCACAT
rJMSF048O13- GTTCCAATGGTTCAAACAAGGCCTTTCTGCGCTCAGAAAGAACAGAAAGTGCATCCACAT
rJMSF043L04- GTTCCAATGGTTCAAACAAGGCCTTTCTGCGCTCAGAAAGAACAGAAAGTGCATCCACAT
____________________________________________________________
consensus GTTCCAATGGTTCAAACAAGGCCTTTCTGCGCTCAGAAAGAACAGAAAGTGCATCCACAT
. : . : . : . : . : . :
rJMFF040N11- CCATTTCCTCCTTTTTCTCATCACCCGACAATTCTTCCTGCTGTTTCTCTGGCGTTTTCT
JMSF043L04+ CCATTTCCTCCTTTTTCTCATCACCCGACAATTCTTCCTGCTGTTTCTCTGGCGTTTTCT
JMSF048O13+ CCATTTCCTCCTTTTTCTCATCACCCGACAATTCTTCCTGCTGTTTCTCTGGCGTTTTCT
JMFF011C02+ CCATTTCCTCCTTTTTCTCATCACCCGACAATTCTTCCTGCTGTTTCTCTGGCGTTTTCT
rJMSF048O13- CCATTTCCTCCTTTTTCTCATCACCCGACAATTCTTCCTGCTGTTTCTCTGGCGTTTTCT
rJMSF043L04- CCATTTCCTCCTTTTTCTCATCACCCGACAATTCTTCCTGCTGTTTCTCTGGCGTTTTCT
____________________________________________________________
consensus CCATTTCCTCCTTTTTCTCATCACCCGACAATTCTTCCTGCTGTTTCTCTGGCGTTTTCT
. : . : . : . : . : . :
rJMFF040N11- CATCCGTTACACTGTCCAACTTCTTCCCACTGACTG
JMSF043L04+ CATCCGTTACACTGTCCAACTTCTTCCCACTGACTG
JMSF048O13+ CATCCGTTACACTGTCCAACTTCTTCCCACTGACTG
JMFF011C02+ CATCCGTTACACTGTCCAACTTCTTCCCACTGACTG
rJMSF048O13- CATCCGTTACACTGTCCAACTTCTTCCCACTGACTGATCTTTTCCGGGATTTCCAGAAAA
rJMSF043L04- CATCCGTTACACTGTCCAACTTCTTCCCACTGACTGATCTTTTCCGGGATTTCCAGAAAA
____________________________________________________________
consensus CATCCGTTACACTGTCCAACTTCTTCCCACTGACTGATCTTTTCCGGGATTTCCAGAAAA
. : . : . : . : . : . :
rJMSF048O13- CTGGAGTAGAAGGCACGTGGGAGAAGCCATTCAAAGTCTCCATGTCCATGGCCATGGGGG
rJMSF043L04- CTGGAGTAGAAGGCACGTGGGAGAAGCCATTCAAAGTCTCCATGTCCATGGCCATGGGGG
____________________________________________________________
consensus CTGGAGTAGAAGGCACGTGGGAGAAGCCATTCAAAGTCTCCATGTCCATGGCCATGGGGG
. : . : . : . : . : . :
rJMSF048O13- TCTTCTCTGTAGACTCCTTCATT
rJMSF043L04- TCTTCTCTGTAGACTCCTTCATTGAAAAAACTGCAAATTTCTGTCAAGAAAACACCAAAA
____________________________________________________________
consensus TCTTCTCTGTAGACTCCTTCATTGAAAAAACTGCAAATTTCTGTCAAGAAAACACCAAAA