Contig 007214:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016P19Sequence251005037 (6)749007214 (2)gb|KHN06596.1|4e-05Copia protein, partial [Glycine soja]
JMSF043J24Sequence733005037 (6)ref|XP_006586078.1|72.0PREDICTED: uncharacterized protein LOC100794157 [Glycine max]719007214 (2)gb|KHN06596.1|3e-05Copia protein, partial [Glycine soja]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF016P19+ TTGGAGATATTGGATGCTGGATTTGACCC
                      ____________________________________________________________
consensus TTGGAGATATTGGATGCTGGATTTGACCC
 
. : . : . : . : . : . :
rJMSF016P19+ CTTTAAACCCTTTTATTACTGTTGGTCGTCTTTACCTGCCTCCACCCAACAAGTTTTACC
rJMSF043J24+ GGTCGTCTTTACCTGCCTCCACCCAACAAGTTTTACC
                      ____________________________________________________________
consensus CTTTAAACCCTTTTATTACTGTTGGTCGTCTTTACCTGCCTCCACCCAACAAGTTTTACC
 
. : . : . : . : . : . :
rJMSF016P19+ CCACCTCTCGAACAATCTTATTAATTACATGCATATATATGTGCATACAGGTATATGGTG
rJMSF043J24+ CCACCTCTCGAACAATCTTATTAATTACATGCATATATATGTGCATACAGGTATATGGTG
                      ____________________________________________________________
consensus CCACCTCTCGAACAATCTTATTAATTACATGCATATATATGTGCATACAGGTATATGGTG
 
. : . : . : . : . : . :
rJMSF016P19+ TTGGAAGCGAACAAGTAGACAGAAAGCCTGTGAATGCCTGATAAAGGAGGGGTGCAGTAC
rJMSF043J24+ TTGGAAGCGAACAAGTAGACAGAAAGCCTGTGAATGCCTGATAAAGGAGGGGTGCAGTAC
                      ____________________________________________________________
consensus TTGGAAGCGAACAAGTAGACAGAAAGCCTGTGAATGCCTGATAAAGGAGGGGTGCAGTAC
 
. : . : . : . : . : . :
rJMSF016P19+ AAGCAAGAAATCAGTGTTGCCTAAGGCTGTTGATCTTGCAAGGGAAATGAACAGACGATG
rJMSF043J24+ AAGCAAGAAATCAGTGTTGCCTAAGGCTGTTGATCTTGCAAGGGAAATGAACAGACGATG
                      ____________________________________________________________
consensus AAGCAAGAAATCAGTGTTGCCTAAGGCTGTTGATCTTGCAAGGGAAATGAACAGACGATG
 
. : . : . : . : . : . :
rJMSF016P19+ TAGTGCAGATCCAGAGGCTGGGAAACAGTTCTGGGGAGGTCTGAGTGAAGTGTGGGTAGG
rJMSF043J24+ TAGTGCAGATCCAGAGGCTGGGAAACAGTTCTGGGGAGGTCTGAGTGAAGTGTGGGTAGG
                      ____________________________________________________________
consensus TAGTGCAGATCCAGAGGCTGGGAAACAGTTCTGGGGAGGTCTGAGTGAAGTGTGGGTAGG
 
. : . : . : . : . : . :
rJMSF016P19+ GTTGCTGGTGTATGTGTCGAGAACTCAATAGTTCTTCATTGTAAACCAGTAGTCAGAGAG
rJMSF043J24+ GTTGCTGGTGTATGTGTCGAGAACTCAATAGTTCTTCATTGTAAACCAGTAGTCAGAGAG
                      ____________________________________________________________
consensus GTTGCTGGTGTATGTGTCGAGAACTCAATAGTTCTTCATTGTAAACCAGTAGTCAGAGAG
 
. : . : . : . : . : . :
rJMSF016P19+ AAGGAAAAATGATGTGCATTATTGGTGATCTGAAAATGAGTACAAAAGCCTAGTGTGAAA
rJMSF043J24+ AAGGAAAAATGATGTGCATTATTGGTGATCTGAAAATGAGTACAAAAGCCTAGTGTGAAA
                      ____________________________________________________________
consensus AAGGAAAAATGATGTGCATTATTGGTGATCTGAAAATGAGTACAAAAGCCTAGTGTGAAA
 
. : . : . : . : . : . :
rJMSF016P19+ AGGGAAAGGAAGCTACTGTTATATACAAACTGCTATGGCAGTTATAACAGAAAAGGAAAG
rJMSF043J24+ AGGGAAAGGAAGCTACTGTTATATACAAACTGCTATGGCAGTTATAACAGAAAAGGAAAG
                      ____________________________________________________________
consensus AGGGAAAGGAAGCTACTGTTATATACAAACTGCTATGGCAGTTATAACAGAAAAGGAAAG
 
. : . : . : . : . : . :
rJMSF016P19+ AGGAGAAAAGACACAAAAGTCCTTCTAGATGTGAGGCAGATTAGATAGCTGAGAAGGCTT
rJMSF043J24+ AGGAGAAAAGACACAAAAGTCCTTCTAGATGTGAGGCAGATTAGATAGCTGAGAAGGCTT
                      ____________________________________________________________
consensus AGGAGAAAAGACACAAAAGTCCTTCTAGATGTGAGGCAGATTAGATAGCTGAGAAGGCTT
 
. : . : . : . : . : . :
rJMSF016P19+ GAGCTAAGTATGCTTCATCACCCCCCCCCGTAAGCTGGAGCATGAACATCTTGAAGGCCC
rJMSF043J24+ GAGCTAAGTATGCTTCATCACCCCCCCCCGTAAGCTGGAGCATGAACATCTTGAAGGCCC
                      ____________________________________________________________
consensus GAGCTAAGTATGCTTCATCACCCCCCCCCGTAAGCTGGAGCATGAACATCTTGAAGGCCC
 
. : . : . : . : . : . :
rJMSF016P19+ AGCTTAGAGTGGAAATCATCAAACAACACTATTGGCAAAGCCTTGGTGAAACCATCAGCA
rJMSF043J24+ AGCTTAGAGTGGAAATCATCAAACAACACTATTGGCAAAGCCTTGGTGAAACCATCAGCA
                      ____________________________________________________________
consensus AGCTTAGAGTGGAAATCATCAAACAACACTATTGGCAAAGCCTTGGTGAAACCATCAGCA
 
. : . : . : . : . : . :
rJMSF016P19+ AGCTGTTTTTGTGAGGGAACTGACATTAGCTTTATAACTCCTTCATATACTTTCTGCTAA
rJMSF043J24+ AGCTGTTTTTGTGAGGGAACTGACATTAGCTTTATAACTCCTTCATATACTTTCTGCTAA
                      ____________________________________________________________
consensus AGCTGTTTTTGTGAGGGAACTGACATTAGCTTTATAACTCCTTCATATACTTTCTGCTAA