Contig 007214:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016P19Sequence251005037 (6)749007214 (2)gb|KHN06596.1|4e-05Copia protein, partial [Glycine soja]
JMSF043J24Sequence733005037 (6)ref|XP_006586078.1|72.0PREDICTED: uncharacterized protein LOC100794157 [Glycine max]719007214 (2)gb|KHN06596.1|3e-05Copia protein, partial [Glycine soja]

Alignment

This contig is upended


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rJMSF016P19+                                         TTGGAGATATTGGATGCTGGATTTGACCC
                      ____________________________________________________________
consensus                                            TTGGAGATATTGGATGCTGGATTTGACCC
 
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rJMSF016P19+          CTTTAAACCCTTTTATTACTGTTGGTCGTCTTTACCTGCCTCCACCCAACAAGTTTTACC
rJMSF043J24+                                 GGTCGTCTTTACCTGCCTCCACCCAACAAGTTTTACC
                      ____________________________________________________________
consensus             CTTTAAACCCTTTTATTACTGTTGGTCGTCTTTACCTGCCTCCACCCAACAAGTTTTACC
 
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rJMSF016P19+          CCACCTCTCGAACAATCTTATTAATTACATGCATATATATGTGCATACAGGTATATGGTG
rJMSF043J24+          CCACCTCTCGAACAATCTTATTAATTACATGCATATATATGTGCATACAGGTATATGGTG
                      ____________________________________________________________
consensus             CCACCTCTCGAACAATCTTATTAATTACATGCATATATATGTGCATACAGGTATATGGTG
 
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rJMSF016P19+          TTGGAAGCGAACAAGTAGACAGAAAGCCTGTGAATGCCTGATAAAGGAGGGGTGCAGTAC
rJMSF043J24+          TTGGAAGCGAACAAGTAGACAGAAAGCCTGTGAATGCCTGATAAAGGAGGGGTGCAGTAC
                      ____________________________________________________________
consensus             TTGGAAGCGAACAAGTAGACAGAAAGCCTGTGAATGCCTGATAAAGGAGGGGTGCAGTAC
 
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rJMSF016P19+          AAGCAAGAAATCAGTGTTGCCTAAGGCTGTTGATCTTGCAAGGGAAATGAACAGACGATG
rJMSF043J24+          AAGCAAGAAATCAGTGTTGCCTAAGGCTGTTGATCTTGCAAGGGAAATGAACAGACGATG
                      ____________________________________________________________
consensus             AAGCAAGAAATCAGTGTTGCCTAAGGCTGTTGATCTTGCAAGGGAAATGAACAGACGATG
 
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rJMSF016P19+          TAGTGCAGATCCAGAGGCTGGGAAACAGTTCTGGGGAGGTCTGAGTGAAGTGTGGGTAGG
rJMSF043J24+          TAGTGCAGATCCAGAGGCTGGGAAACAGTTCTGGGGAGGTCTGAGTGAAGTGTGGGTAGG
                      ____________________________________________________________
consensus             TAGTGCAGATCCAGAGGCTGGGAAACAGTTCTGGGGAGGTCTGAGTGAAGTGTGGGTAGG
 
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rJMSF016P19+          GTTGCTGGTGTATGTGTCGAGAACTCAATAGTTCTTCATTGTAAACCAGTAGTCAGAGAG
rJMSF043J24+          GTTGCTGGTGTATGTGTCGAGAACTCAATAGTTCTTCATTGTAAACCAGTAGTCAGAGAG
                      ____________________________________________________________
consensus             GTTGCTGGTGTATGTGTCGAGAACTCAATAGTTCTTCATTGTAAACCAGTAGTCAGAGAG
 
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rJMSF016P19+          AAGGAAAAATGATGTGCATTATTGGTGATCTGAAAATGAGTACAAAAGCCTAGTGTGAAA
rJMSF043J24+          AAGGAAAAATGATGTGCATTATTGGTGATCTGAAAATGAGTACAAAAGCCTAGTGTGAAA
                      ____________________________________________________________
consensus             AAGGAAAAATGATGTGCATTATTGGTGATCTGAAAATGAGTACAAAAGCCTAGTGTGAAA
 
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rJMSF016P19+          AGGGAAAGGAAGCTACTGTTATATACAAACTGCTATGGCAGTTATAACAGAAAAGGAAAG
rJMSF043J24+          AGGGAAAGGAAGCTACTGTTATATACAAACTGCTATGGCAGTTATAACAGAAAAGGAAAG
                      ____________________________________________________________
consensus             AGGGAAAGGAAGCTACTGTTATATACAAACTGCTATGGCAGTTATAACAGAAAAGGAAAG
 
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rJMSF016P19+          AGGAGAAAAGACACAAAAGTCCTTCTAGATGTGAGGCAGATTAGATAGCTGAGAAGGCTT
rJMSF043J24+          AGGAGAAAAGACACAAAAGTCCTTCTAGATGTGAGGCAGATTAGATAGCTGAGAAGGCTT
                      ____________________________________________________________
consensus             AGGAGAAAAGACACAAAAGTCCTTCTAGATGTGAGGCAGATTAGATAGCTGAGAAGGCTT
 
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rJMSF016P19+          GAGCTAAGTATGCTTCATCACCCCCCCCCGTAAGCTGGAGCATGAACATCTTGAAGGCCC
rJMSF043J24+          GAGCTAAGTATGCTTCATCACCCCCCCCCGTAAGCTGGAGCATGAACATCTTGAAGGCCC
                      ____________________________________________________________
consensus             GAGCTAAGTATGCTTCATCACCCCCCCCCGTAAGCTGGAGCATGAACATCTTGAAGGCCC
 
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rJMSF016P19+          AGCTTAGAGTGGAAATCATCAAACAACACTATTGGCAAAGCCTTGGTGAAACCATCAGCA
rJMSF043J24+          AGCTTAGAGTGGAAATCATCAAACAACACTATTGGCAAAGCCTTGGTGAAACCATCAGCA
                      ____________________________________________________________
consensus             AGCTTAGAGTGGAAATCATCAAACAACACTATTGGCAAAGCCTTGGTGAAACCATCAGCA
 
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rJMSF016P19+          AGCTGTTTTTGTGAGGGAACTGACATTAGCTTTATAACTCCTTCATATACTTTCTGCTAA
rJMSF043J24+          AGCTGTTTTTGTGAGGGAACTGACATTAGCTTTATAACTCCTTCATATACTTTCTGCTAA
                      ____________________________________________________________
consensus             AGCTGTTTTTGTGAGGGAACTGACATTAGCTTTATAACTCCTTCATATACTTTCTGCTAA