Contig 007213:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045L08Sequence624012102 (4)ref|XP_004249906.1|3e-13PREDICTED: BTB/POZ domain-containing protein At2g13690 [Solanum lycopersicum]555007213 (2)ref|XP_009621021.1|9e-64PREDICTED: BTB/POZ domain-containing protein At2g13690 [Nicotiana tomentosiform
JMSF043I02Sequence752016859ref|XP_004249906.1|6e-40PREDICTED: BTB/POZ domain-containing protein At2g13690 [Solanum lycopersicum]843007213 (2)ref|XP_002526636.1|5e-72transcription regulator, putative [Ricinus communis] gb|EEF35748.1| transcriptio

Alignment

This contig is upended


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rJMSF043I02+                                                                   TGG
                      ____________________________________________________________
consensus                                                                      TGG
 
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rJMSF043I02+          GGAAGGAGAAAGATAAGCCATTGATTGAGCGAATATCAAATCAGGTGGACAACATGAATT
                      ____________________________________________________________
consensus             GGAAGGAGAAAGATAAGCCATTGATTGAGCGAATATCAAATCAGGTGGACAACATGAATT
 
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rJMSF043I02+          GGCTACTCGAAATTTTGCTCGATCACCAGATGGCGGAGGGGTTGGTTGACATGTGGACGC
                      ____________________________________________________________
consensus             GGCTACTCGAAATTTTGCTCGATCACCAGATGGCGGAGGGGTTGGTTGACATGTGGACGC
 
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rJMSF043I02+          ATCAAGTGAAGTTGCTTCACCTGCACAAGTGTGCATCTCCAATGCTTAGGTATGAGCTGA
                      ____________________________________________________________
consensus             ATCAAGTGAAGTTGCTTCACCTGCACAAGTGTGCATCTCCAATGCTTAGGTATGAGCTGA
 
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rJMSF043I02+          GCCGGGTTTCTGCAAAGTTGTTCGTTGCAATGGGCACTAGAAAAATGCATTGCCGGTCAG
                      ____________________________________________________________
consensus             GCCGGGTTTCTGCAAAGTTGTTCGTTGCAATGGGCACTAGAAAAATGCATTGCCGGTCAG
 
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rJMSF043I02+          AAGCAAGGTTAGGGTTAATGCAGGCATGGTTCAAACCGATGCTACTGGACTTTGGTTGGC
                      ____________________________________________________________
consensus             AAGCAAGGTTAGGGTTAATGCAGGCATGGTTCAAACCGATGCTACTGGACTTTGGTTGGC
 
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rJMFF045L08+                                                                     T
rJMSF043I02+          TACAGAGGTGTAAGAAAGGCCTAGACATAAAGGCATTGGAGGAAGCGATGGGGCAAGCGT
                      ____________________________________________________________
consensus             TACAGAGGTGTAAGAAAGGCCTAGACATAAAGGCATTGGAGGAAGCGATGGGGCAAGCGT
 
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rJMFF045L08+          CCTAACTCTTCCTTTAAAGGAACAATACATGCTGTTTATGGATTGGTTCAGGTGCTTCTC
rJMSF043I02+          CCTAACTCTTCCTTTGAAAGAGCAATACATGCTGTTTATGGATTGGTTCAGGTGTTTCTC
                      ____________________________________________________________
consensus             CCTAACTCTTCCTTTGAAGGAGCAATACATGCTGTTTATGGATTGGTTCAGGTGTTTCTC
 
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rJMFF045L08+          CAAGAACGGTACAGATTGCCCCAACCTCAGCAAAGCCTTCCAGATTTGGTGGAGGAGATC
rJMSF043I02+          CAAGAACGGCACTGAATGCCCTAATCTTAGCAAGGCATTCCAGATTTGGTGGCGGAGATC
                      ____________________________________________________________
consensus             CAAGAACGGTACTGATTGCCCTAATCTTAGCAAGGCCTTCCAGATTTGGTGGCGGAGATC
 
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rJMFF045L08+          ATTCC                                                       
rJMSF043I02+          ATTCCTCAGAGGCTCTGACCCCTACGCTTTTGAATCTAGGTAATCACGGGTGGTGTTAAG
                      ____________________________________________________________
consensus             ATTCCTCAGAGGCTCTGACCCCTACGCTTTTGAATCTAGGTAATCACGGGTGGTGTTAAG
 
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rJMSF043I02+          TCTATTAGTTTTGGTATAGTGTTGTTCTAATCAGGGCAGTGTGGATCATATGATGGTGAA
                      ____________________________________________________________
consensus             TCTATTAGTTTTGGTATAGTGTTGTTCTAATCAGGGCAGTGTGGATCATATGATGGTGAA
 
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rJMSF043I02+          TAATGTGAAAGAAGAAGAAGAAGCGCCTTTTTAATGCTGTTTCAGTCCTACCAAATGAAA
                      ____________________________________________________________
consensus             TAATGTGAAAGAAGAAGAAGAAGCGCCTTTTTAATGCTGTTTCAGTCCTACCAAATGAAA
 
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rJMSF043I02+          CAAGTTTCCATGAGCCATAAATTCATTCATCCCAAGTGCAAAGTGAGTGTTGACTTCACA
                      ____________________________________________________________
consensus             CAAGTTTCCATGAGCCATAAATTCATTCATCCCAAGTGCAAAGTGAGTGTTGACTTCACA
 
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rJMSF043I02+          TTTTGATTGTTGAGCAGGGACCCTGAACTAGAAGAATCCAATCCCAATAGTCAATATGAA
                      ____________________________________________________________
consensus             TTTTGATTGTTGAGCAGGGACCCTGAACTAGAAGAATCCAATCCCAATAGTCAATATGAA
 
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rJMSF043I02+          GAAGAAGCAAAGCTGTCAATCTGATTTTGTGAACATCATCCTAACTTATGTTGCTGCTGC
                      ____________________________________________________________
consensus             GAAGAAGCAAAGCTGTCAATCTGATTTTGTGAACATCATCCTAACTTATGTTGCTGCTGC