Contig 007211:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038E21Sequence463007211 (4)emb|CDO97835.1|4e-31unnamed protein product [Coffea canephora]840007188 (2)ref|XP_007208135.1|2e-06hypothetical protein PRUPE_ppa000319mg [Prunus persica] gb|EMJ09334.1| hypotheti
JMSF038H01Sequence466007211 (4)emb|CDO97835.1|4e-31unnamed protein product [Coffea canephora]875007188 (2)ref|XP_007208135.1|2e-06hypothetical protein PRUPE_ppa000319mg [Prunus persica] gb|EMJ09334.1| hypotheti
JMSF043E18Sequence828011441 (5)ref|XP_011098150.1|1e-169PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1 418007211 (4)emb|CDO97835.1|1e-31unnamed protein product [Coffea canephora]
JMSF050L01Sequence643011441 (5)ref|XP_011098151.1|5e-131PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X2 392007211 (4)emb|CDO97835.1|8e-32unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF038E21+                     TTTTTTCTAAAATAACACTGTAATATCTCTCAAAAAACACTGTAATAAAT
JMSF038H01+                  TNTTTTTTTCTAAAATAACACCGTAATATCTCTCAAAAAACACTGTAATAAAT
                      ____________________________________________________________
consensus                    TNTTTTTTTCTAAAATAACACTGTAATATCTCTCAAAAAACACTGTAATAAAT
 
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JMSF038E21+           ACTACAAATACAAATAAACATTTAATCAAAGCAAAATATAGGGCAAATTTTCAAAGACAC
rJMSF050L01-                                       AGCAAAATNTAGGGCAAATTTTCTAAGACAC
JMSF038H01+           ACTACAAATACAAATAAACATTTAATCAAAGCAAAATATAGGGCAAATTTTCAAAGACAC
                      ____________________________________________________________
consensus             ACTACAAATACAAATAAACATTTAATCAAAGCAAAATATAGGGCAAATTTTCAAAGACAC
 
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JMSF038E21+           AACAAAAAGCATTGTTCCAAAGATCAATCCAGGTTTAACAGAACTAAATAAAGAACATCA
rJMSF050L01-          AACAAAAAGCATTGTTCCAAAGATCAATCCAGGTTTAACAGAACTAAATAAAGAACATCA
JMSF038H01+           AACAAAAAGCATTGTTCCAAAGATCAATCCAGGTTTAACAGAACTAAATAAAGAACATCA
                      ____________________________________________________________
consensus             AACAAAAAGCATTGTTCCAAAGATCAATCCAGGTTTAACAGAACTAAATAAAGAACATCA
 
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JMSF038E21+           TGCCCATCAAATCGTCTCTAGATCAAAATACTCCCTTCACTAACAAACAACAAGAAGGCC
rJMSF050L01-          TGCCCATCAAATCGTCTCTAGATCAAAATACTCCCTTCACTAACAAACAACAAGAAGGCC
JMSF038H01+           TGCCCATCAAATCGTCTCTAGATCAAAATACTCCCTTCACTAACAAACAACAAGAAGGCC
                      ____________________________________________________________
consensus             TGCCCATCAAATCGTCTCTAGATCAAAATACTCCCTTCACTAACAAACAACAAGAAGGCC
 
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JMSF038E21+           TTCAATCCATTAGCGGTACTTTATGAACCCGATTTCTTTGGCATTGCTGCGGAAGCACTG
rJMSF050L01-          TTCAATCCATTAGCGGTACTTTATGAACCCGATTTCTTTGGCATTGCTGCGGAAGCACTG
JMSF038H01+           TTCAATCCATTAGCGGTACTTTATGAACCCGATTTCTTTGGCATTGCTGCGGAAGCACTG
rJMSF043E18-                     AGCGGTACTTTATGAACCCGATTTCTTTGGCATTGCTGCGGAAGCACTG
                      ____________________________________________________________
consensus             TTCAATCCATTAGCGGTACTTTATGAACCCGATTTCTTTGGCATTGCTGCGGAAGCACTG
 
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JMSF038E21+           TCTGCAGCACATAAGGCCATACCTTCTGATAATTCCATGAGAATTCCCACACACACGGCA
rJMSF050L01-          TCTGCAGCACATAAGGCCATACTTTCTGATAATTCCATGAGAATTCCCACACACACGGCA
JMSF038H01+           TCTGCAGCACATAAGGCCATACCTTCTGATAATTCCATGAGAATTCCCACACACACGGCA
rJMSF043E18-          TCTGCAGCACATAAGGCCATACTTTCTGATAATTCCATGAGAATTCCCACACACACGGCA
                      ____________________________________________________________
consensus             TCTGCAGCACATAAGGCCATACTTTCTGATAATTCCATGAGAATTCCCACACACACGGCA
 
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JMSF038E21+           TGCGCGTGATCCAGGTCCATAGGTCTTAGGGTGAGCGTTCCAGATGTTTGAGTGACCCAT
rJMSF050L01-          TGCGCGTGATCCAGGTCCATAGGTCTTAGGGTGAGCGTTCCAGATGTTTGAGTGACCCAT
JMSF038H01+           TGCGCGTGATCCAGGTCCATAGGTCTTAGGGTGAGCGTTCCAGATGTTTGAGTGACCCAT
rJMSF043E18-          TGCGCGTGATCCAGGTCCATAGGTCTTAGGGTGAGCGTTCCAGATGTTTGAGTGACCCAT
                      ____________________________________________________________
consensus             TGCGCGTGATCCAGGTCCATAGGTCTTAGGGTGAGCGTTCCAGATGTTTGAGTGACCCAT
 
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JMSF038E21+           GACTACCTTGGATTCAGCTGCCGCTTCTGAGTTCTGAAACAATGAAAACGG         
rJMSF050L01-          G                                                           
JMSF038H01+           GACTACCTTGGATTCAGCTGCCGCTTCTGAGTTCTGAAACAATGAAAACGG         
rJMSF043E18-          GACTACCTTGGATTCAGCTGCCGCTTCTGAGTTCTGAAACAATGAAAACGGGTCGTGATG
                      ____________________________________________________________
consensus             GACTACCTTGGATTCAGCTGCCGCTTCTGAGTTCTGAAACAATGAAAACGGGTCGTGATG