Contig 007209:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026A03Sequence489007209 (6)447007209 (6)
JMSF036I23Sequence489007209 (6)441007209 (6)
JMSF042K16Sequence781007209 (6)767007209 (6)ref|XP_004510585.1|35.4PREDICTED: uncharacterized protein LOC101494113 [Cicer arietinum]

Alignment

This contig is upended


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JMSF026A03-                                                GGGCGGACGGCAGCTTGGGTTCT
rJMSF026A03+                                               GGGCGGACGGCAGCTTGGGTTCT
rJMSF036I23+                                               GGGCGTACGGCATCTTGGGTTCT
JMSF036I23-                                                GGGCGTACGGCATCTTGGGTTCT
JMSF042K16-                                                 GGCGGACGGCAGCTTGGGTTCT
                      ____________________________________________________________
consensus                                                  GGGCGGACGGCAGCTTGGGTTCT
 
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JMSF026A03-           CCATTCGACCAATCAACAGAGCCACAGACGACGCCCGACGCCCGGAACTTCTGCAGTGGC
rJMSF026A03+          CCATTCGACCAATCAACAGAGCCACAGACGACGCCCGACGCCCGGAACTTCTGCAGTGGC
rJMSF036I23+          CCATTCGACCAATCAACAGAGCCACAGACGACGCCCGACGCCCGGAACTTCTGCAGTGGC
JMSF036I23-           CCATTCGACCAATCAACAGAGCCACAGACGACGCCCGACGCCCGGAACTTCTGCAGTGGC
JMSF042K16-           CCATTCGACCAATCAACAGAGCCACAGACGACGCCCGACGCCCGGAACTTCTGCAGTGGC
rJMSF042K16+                     ATCAACAGAGCCACAGACGACGCCCGACGCCCGGAACTTCTGCAGTGGC
                      ____________________________________________________________
consensus             CCATTCGACCAATCAACAGAGCCACAGACGACGCCCGACGCCCGGAACTTCTGCAGTGGC
 
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JMSF026A03-           GACACTTCCGGTCACTCCTCAGATTCCACCGACGCTCTCCGCGAGGACCGACCTCAGTCC
rJMSF026A03+          GACACTTCCGGTCACTCCTCAGATTCCACCGACGCTCTCCGCGAGGACCGACCTCAGTCC
rJMSF036I23+          GACACTTCCGGTCACTCCTCAGATTCCACCGACGCTCTCCGCGAGGACCGACCTCAGTCC
JMSF036I23-           GACACTTCCGGTCACTCCTCAGATTCCACCGACGCTCTCCGCGAGGACCGACCTCAGTCC
JMSF042K16-           GACACTTCCGGTCACTCCTCAGATTCCACCGACGCTCTCCGCGAGGACCGACCTCAGTCC
rJMSF042K16+          GACACTTCCGGTCACTCCTCAGATTCCACCGACGCTCTCCGCGAGGACCGACCTCAGTCC
                      ____________________________________________________________
consensus             GACACTTCCGGTCACTCCTCAGATTCCACCGACGCTCTCCGCGAGGACCGACCTCAGTCC
 
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JMSF026A03-           TCACATCCTCTGGTTTTCTGAAGAACCTAAAGGTTGAATGTTTCTTAAAGCATAAAAAGG
rJMSF026A03+          TCACATCCTCTGGTTTTCTGAAGAACCTAAAGGTTGAATGTTTCTTAAAGCATAAAAAGG
rJMSF036I23+          TCACATCCTCTGGTTTTCTGAAGAACCTAAAGGTTGAATGTTTCTTAAAGCATAAAAAGG
JMSF036I23-           TCACATCCTCTGGTTTTCTGAAGAACCTAAAGGTTGAATGTTTCTTAAAGCATAAAAAGG
JMSF042K16-           TCACATCCTCTGGTTTTCTGAAGAACCTAAAGGTTGAATGTTTCTTAAAGCATAAAAAGG
rJMSF042K16+          TCACATCCTCTGGTTTTCTGAAGAACCTAAAGGTTGAATGTTTCTTAAAGCATAAAAAGG
                      ____________________________________________________________
consensus             TCACATCCTCTGGTTTTCTGAAGAACCTAAAGGTTGAATGTTTCTTAAAGCATAAAAAGG
 
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JMSF026A03-           AAGAACTTACCATGGAACAGTTGGGCACCGACGTTCAAGTTGAGGAAGGAATCAAATTGC
rJMSF026A03+          AAGAACTTACCATGGAACAGTTGGGCACCGACGTTCAAGTTGAGGAAGGAATCAAATTGC
rJMSF036I23+          AAGAACTTACCATGGAACAGTTGGGCACCGACGTTCAAGTTGAGGAAGGAATCAAATTGC
JMSF036I23-           AAGAACTTACCATGGAACAGTTGGGCACCGACGTTCAAGTTGAGGAAGGAATCAAATTGC
JMSF042K16-           AAGAACTTACCATGGAACAGTTGGGCACCGACGTTCAAGTTGAGGAAGGAATCAAATTGC
rJMSF042K16+          AAGAACTTACCATGGAACAGTTGGGCACCGACGTTCAAGTTGAGGAAGGAATCAAATTGC
                      ____________________________________________________________
consensus             AAGAACTTACCATGGAACAGTTGGGCACCGACGTTCAAGTTGAGGAAGGAATCAAATTGC
 
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JMSF026A03-           AGGAAAGTGAAAGTGCAAGTGCAGGAAGTGTCAAAGGCTCCGTGGCTCCCGGTTCTGTTG
rJMSF026A03+          AGGAAAGTGAAAGTGCAAGTGCAGGAAGTGTCAAAGGCTCCGTGGCTCCCGGTTCTGTTG
rJMSF036I23+          AGGAAAGTGAAAGTGCAAGTGCAGGAAGTGTCAAAGGCTCCGTGGCTCCCGGTTCTGTTG
JMSF036I23-           AGGAAAGTGAAAGTGCAAGTGCAGGAAGTGTCAAAGGCTCCGTGGCTCCCGGTTCTGTTG
JMSF042K16-           A--AAAGTGAAAGTGCAAGTGCAGGAAGTGTCAAAGGCTCCGTGGCTCCCGGTTCTGTTG
rJMSF042K16+          A--AAAGTGAAAGTGCAAGTGCAGGAAGTGTCAAAGGCTCCGTGGCTCCCGGTTCTGTTG
                      ____________________________________________________________
consensus             AGGAAAGTGAAAGTGCAAGTGCAGGAAGTGTCAAAGGCTCCGTGGCTCCCGGTTCTGTTG
 
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JMSF026A03-           ATGAAGGCAAATCGAGTGAAAACAATAAAGGAAAAGGAAAGTTAGGTCAAGTCACCAAAT
rJMSF026A03+          ATGAAGGCAAATCGAGTGAAAACAATAAAGGAAAAGGAAAGTTAGGTCAAGTCACCAAAT
rJMSF036I23+          ATGAAGGCAAATCGAGTGAAAACAATAAAGGAAAAGGAAAGTTAGGTCAAGTCACCAAAT
JMSF036I23-           ATGAAGGCAAATCGAGTGAAAACAATAAAGGAAAAGGAAAGTTAGGTCAAGTCACCAAAT
JMSF042K16-           ATGAAGGCAAATCGAGTGAAAACAATAAAGGAAAAGGAAAGTTAGGTCAAGTCACCAAAT
rJMSF042K16+          ATGAAGGCAAATCGAGTGAAAACAATAAAGGAAAAGGAAAGTTAGGTCAAGTCACCAAAT
                      ____________________________________________________________
consensus             ATGAAGGCAAATCGAGTGAAAACAATAAAGGAAAAGGAAAGTTAGGTCAAGTCACCAAAT
 
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JMSF026A03-           CTTCTAAATTTAAAAAGAAGCCAAAGGAGAACACAAAAGATTTCTGTTGGATATGTAGCG
rJMSF026A03+          CTTCTAAATTTAAAAAGAAGCCAAAGGAGAACACAAAAGATTTCTGTTGGATATGTAGCG
rJMSF036I23+          CTTCTAAATTTAAAAAGAAGCCAAAGGAGAACACAAAAGATTTCTGTTGGATATGTAG  
JMSF036I23-           CTTCTAAATTTAAAAAGAAGCCAAAGGAGAACACAAAAGATTTCTGTTGGATATGTAGCG
JMSF042K16-           CTTCTAAATTTAAAAAGAAGCCAAAGGAGAACACAAAAGATTTCTGTTGGATATGTAGCG
rJMSF042K16+          CTTCTAAATTTAAAAAGAAGCCAAAGGAGAACACAAAAGATTTCTGTTGGATATGTAGCG
                      ____________________________________________________________
consensus             CTTCTAAATTTAAAAAGAAGCCAAAGGAGAACACAAAAGATTTCTGTTGGATATGTAGCG
 
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JMSF026A03-           GTCCACATTTAAAAAAGGACTGCAAAATTTGGAAGGAAAA                    
JMSF036I23-           GTCCACATTTAAAAAAGGACTGCAAAATTTGGAAGGAAAA                    
JMSF042K16-           GTCCACATTTAAAAAAGGACTGCAAAATTTGGAAGGAAAAGAGGAAGGAAAAGAAGGCAC
rJMSF042K16+          GTCCACATTTAAAAAAGGACTGCAAAATTTGGAAGGAAAAGAGGAAGGAAAAGAAGGCAC
                      ____________________________________________________________
consensus             GTCCACATTTAAAAAAGGACTGCAAAATTTGGAAGGAAAAGAGGAAGGAAAAGAAGGCAC
 
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JMSF042K16-           GAATTCAAAGCCAATGGAATGGTGATCATGGTCATGAGAGTGGTCAAGAGAAGCAAGAAT
rJMSF042K16+          GAATTCAAAGCCAATGGAATGGTGATCATGGTCATGAGAGTGGTCAAGAGAAGCAAGAAT
                      ____________________________________________________________
consensus             GAATTCAAAGCCAATGGAATGGTGATCATGGTCATGAGAGTGGTCAAGAGAAGCAAGAAT
 
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JMSF042K16-           GATGATTCATGGTGGCTAGACACCGGGGCAACAAGAAATGTTTGCAAGGATGTGGCATCT
rJMSF042K16+          GATGATTCATGGTGGCTAGACACCGGGGCAACAAGAAATGTTTGCAAGGATGTGGCATCT
                      ____________________________________________________________
consensus             GATGATTCATGGTGGCTAGACACCGGGGCAACAAGAAATGTTTGCAAGGATGTGGCATCT
 
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JMSF042K16-           TTATAAAGAATTGAAAGATGGTTCAAGCTTGTACATGAGAAATGATTCTATGGTGAAAGT
rJMSF042K16+          TTATAAAGAATTGAAAGATGGTTCAAGCTTGTACATGAGAAATGATTCTATGGTGAAAGT
                      ____________________________________________________________
consensus             TTATAAAGAATTGAAAGATGGTTCAAGCTTGTACATGAGAAATGATTCTATGGTGAAAGT
 
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JMSF042K16-           CAAAGGCACTGGATATGTCGAACTGGCTTCAAATTAGTATTTGAAACGGATAGATTTATT
rJMSF042K16+          CAAAGGCACTGGATATGTCGAACTGGCTTCAAATTAGTATTTGAAACGGATAGATTTATT
                      ____________________________________________________________
consensus             CAAAGGCACTGGATATGTCGAACTGGCTTCAAATTAGTATTTGAAACGGATAGATTTATT
 
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JMSF042K16-           TTATCCAGTTGTTGTATTTGTTAGACAAAGGTTTAATG                      
rJMSF042K16+          TTATCCAGTTGTTGTATTTGTTAGACAAAGGTTTAATGTGTAATAGTATGTCAAATAAAT
                      ____________________________________________________________
consensus             TTATCCAGTTGTTGTATTTGTTAGACAAAGGTTTAATGTGTAATAGTATGTCAAATAAAT