Contig 007206:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF042D19-                                                   GAATCATTACCTCCTCAAAT
                      ____________________________________________________________
consensus                                                     GAATCATTACCTCCTCAAAT
 
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JMSF042D19-           TTCCACTTCACTTCCTCTCCAATGGCCTCTGAAGAAATGGGCCTTTTCTCGGCCCAACGT
                      ____________________________________________________________
consensus             TTCCACTTCACTTCCTCTCCAATGGCCTCTGAAGAAATGGGCCTTTTCTCGGCCCAACGT
 
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JMSF042D19-           CTCGATAACGGGCTCAATCCACACCCCCAGCTCGTTTTCCCTGAGAGCTTCAGCTGCGGC
JMSF046L20-                                                     GAGAGCTTCAGCTGCGGC
                      ____________________________________________________________
consensus             CTCGATAACGGGCTCAATCCACACCCCCAGCTCGTTTTCCCTGAGAGCTTCAGCTGCGGC
 
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JMSF042D19-           CCACCGCCGCCGCCTCCTCGCCGTGATTCCGCCGCCGCACCCGCTGCTTCTGCTTCCGCC
JMSF046L20-           CCACCGCCGCCGCCTCCTCGCCGTGATTCCGCCGCCGCACCCGCTGCTTCTGCTTCCGCC
                      ____________________________________________________________
consensus             CCACCGCCGCCGCCTCCTCGCCGTGATTCCGCCGCCGCACCCGCTGCTTCTGCTTCCGCC
 
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JMSF042D19-           GTTGGTGACCCCGGTCCGAAAACCACGCGTGAGCTCACCGGATTCCTCGACCACCACAAC
JMSF046L20-           GTTGGTGACCCCGGTCCGAAAACCACGCGTGAGCTCACCGGATTCCTCGACCACCACAAC
                      ____________________________________________________________
consensus             GTTGGTGACCCCGGTCCGAAAACCACGCGTGAGCTCACCGGATTCCTCGACCACCACAAC
 
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JMSF042D19-           TACTTCCGCCCCCAGCCGCAGCAGGCCACCGAGTTCCGCGGCGGCTCCGTGTTCGCCGAC
JMSF046L20-           TACTTCCGCCCCCAGCCGCAGCAGGCCACCGAGTTCCGCGGCGGCTCCGTGTTCGCCGAC
                      ____________________________________________________________
consensus             TACTTCCGCCCCCAGCCGCAGCAGGCCACCGAGTTCCGCGGCGGCTCCGTGTTCGCCGAC
 
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JMSF042D19-           CGCCGGGATTGCCACAACTGGAACACCAGTAGCCGAGCCTCCACCACTCCCAGCGGCGAC
JMSF046L20-           CGCCGGGATTGCCACAACTGGAACACCAGTAGCCGAGCCTCCACCACTCCCAGCGGCGAC
                      ____________________________________________________________
consensus             CGCCGGGATTGCCACAACTGGAACACCAGTAGCCGAGCCTCCACCACTCCCAGCGGCGAC
 
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JMSF042D19-           GGATCGGAGGACGATGAAGACGACGACGACGAGGATGATAATGAAGACGAGAATGAAGCC
JMSF046L20-           GGATCGGAGGACGATGAAGACGACGACGACGAGGATGATAATGAAGACGAGAATGAAGCC
                      ____________________________________________________________
consensus             GGATCGGAGGACGATGAAGACGACGACGACGAGGATGATAATGAAGACGAGAATGAAGCC
 
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JMSF042D19-           GAAGGCCGCGCGCTTGTTGTTAGTCACAACAATAATAGTAAAGTTAATAACAACAGTGAT
JMSF046L20-           GAAGGCCGCGCGCTTGTTGTTAGTCACAACAATAATAGTAAAGTTAATAACAACAGTGAT
                      ____________________________________________________________
consensus             GAAGGCCGCGCGCTTGTTGTTAGTCACAACAATAATAGTAAAGTTAATAACAACAGTGAT
 
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JMSF042D19-           AAAGTTGGAAATCAGAAACCTAAAGACATACCTAATTTTGGTTCGACAGTTGCAGATGAA
JMSF046L20-           AAAGTTGGAAATCAGAAACCTAAAGACATACCTAATTTTGGTTCGACAGTTGCAGATGAA
rJMSF042D19+                                                              CAGATGAA
                      ____________________________________________________________
consensus             AAAGTTGGAAATCAGAAACCTAAAGACATACCTAATTTTGGTTCGACAGTTGCAGATGAA
 
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JMSF042D19-           GCAAGAAATGCAGTGACAATTGCAGATGCCAATGGGACAATTTATTACTCACAGTATTTG
JMSF046L20-           GCAAGAAATGCAGTGACAATTGCAGATGCCAATGGGACAATTTATTACTCACAGTATTTG
rJMSF042D19+          GCCAGAAATGCAGTGACAATTGCAGATGCCAATGGGACAATTTATTACTCACAGTATTTG
                      ____________________________________________________________
consensus             GCAAGAAATGCAGTGACAATTGCAGATGCCAATGGGACAATTTATTACTCACAGTATTTG
 
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JMSF042D19-           CAGGGGACAGGAGTGAGTTCAGGTCAAAAGGATATTGTGGTGATTGATAATGGATGTGGG
JMSF046L20-           CAGGGGACAGGAGTGAGTTCAGGTCAAAAGGATATTGTGGTGATTGATAATGGATGTGGG
rJMSF046L20+            GGGGACAGGAGTGAGTTCAGGTCAAAAGGATATTGTGGTGATTGATAATGGATGTGGG
rJMSF042D19+          CAGGGGACAGGAGTGAGTTCAGGTCAAAAGGATATTGTGGTGATTGATAATGGATGTGGG
                      ____________________________________________________________
consensus             CAGGGGACAGGAGTGAGTTCAGGTCAAAAGGATATTGTGGTGATTGATAATGGATGTGGG
 
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JMSF042D19-           TTTAGTG                                                     
JMSF046L20-           TTTAGTGGGAGAAAAGAGAGTTCATATTCAAGTGAATCT-GGGGAGTCCTTGAGAGCAAT
rJMSF046L20+          TTTAGTGGGAGAAAAGAGAGTTCATATTCAAGTGAATCTNGGGGAGTCCTTGAGAGCAAT
rJMSF042D19+          TTTAGTGGGAGAAAAGAGAGTTCATATTCAAGTGAATCT-GGGGAGTCCTTGAGAGCAAT
                      ____________________________________________________________
consensus             TTTAGTGGGAGAAAAGAGAGTTCATATTCAAGTGAATCT-GGGGAGTCCTTGAGAGCAAT
 
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JMSF046L20-           CCCTTCTGATCCTATAACAGGTGCACTTATGGATGATGGTGTGATATTGCCTTGTGGGCA
rJMSF046L20+          CCCTTCTGATCCTATAACAGGTGCACTTATGGATGATGGTGTGATATTGCCTTGTGGGCA
rJMSF042D19+          CCTTTCTGATCCTATAACAGGTGCACTTATGGATGATGGTGTGATATTGCCTTGTGGGCA
                      ____________________________________________________________
consensus             CCCTTCTGATCCTATAACAGGTGCACTTATGGATGATGGTGTGATATTGCCTTGTGGGCA
 
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JMSF046L20-           TTCCTTTGGTAATGGTGGAGTAGAACATATAATTAGAACGAAAGCTTGCTATAGTTGTGC
rJMSF046L20+          TTCCTTTGGTAATGGTGGAGTAGAACATATAATTAGAACGAAAGCTTGCTATAGTTGTGC
rJMSF042D19+          TTCCTTTGGTAATGGTGGAGTAGAACATATAATTAGAACGAAAGCTTGCTATAGTTGTGC
                      ____________________________________________________________
consensus             TTCCTTTGGTAATGGTGGAGTAGAACATATAATTAGAACGAAAGCTTGCTATAGTTGTGC
 
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JMSF046L20-           ACAACCCGTGTCTGA                                             
rJMSF046L20+          ACAACCCGTGTCTGAGGATTCAGTGGCCCCAAATCTTTCTCTCCGGGCTGCTGTCCAGGC
rJMSF042D19+          ACAACCCGTGTCTGAGGATTCAGTGGCCCCAAATCTTTCTCTCCGGGCTGCTGTCCAGGC
                      ____________________________________________________________
consensus             ACAACCCGTGTCTGAGGATTCAGTGGCCCCAAATCTTTCTCTCCGGGCTGCTGTCCAGGC
 
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rJMSF046L20+          ATTTCGTAGAGAAGAAGAGTTACAAGTTAATCGCCCGCCAAAAAGAAGAAAGGAAAGACC
rJMSF042D19+          ATTTCGTAGAGAAGAAGAGTTACAAGTTAATCGCCCGCCAAAAAGAAGAAAGGAAAGACC
                      ____________________________________________________________
consensus             ATTTCGTAGAGAAGAAGAGTTACAAGTTAATCGCCCGCCAAAAAGAAGAAAGGAAAGACC
 
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rJMSF046L20+          CGAGCAGGAGAAGGGAACGTCTGGTGATTCAATGCTCGGAGACCATCCGAGAAGAGGAGT
rJMSF042D19+          CGAGCAGGAGAAGGGAACGTCTGGTGATTCAATGCTCGGAGACCATCCGAGAAGAGGAGT
                      ____________________________________________________________
consensus             CGAGCAGGAGAAGGGAACGTCTGGTGATTCAATGCTCGGAGACCATCCGAGAAGAGGAGT
 
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rJMSF046L20+          GCAGTTTCCATTTGTCGTGACTGACAGGGTCATAATAAAGGGTAACAAGCGGACACCACT
rJMSF042D19+          GCAGTTTCCATTTGTCGTGACTGACAGGGTCATAATAAAGGGTAACAAGCGGACACCACT
                      ____________________________________________________________
consensus             GCAGTTTCCATTTGTCGTGACTGACAGGGTCATAATAAAGGGTAACAAGCGGACACCACT
 
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rJMSF046L20+          GCGTTTTGTTGGACGAGAGGCTGTTGTCACCACTCAATGCTTGAATGGATGGTATGTGGT
rJMSF042D19+          GCGTTTTGTTGGACGAGAGGCTGTTGTCACCACTCAATGCTTGAATGGATGGTATGTGGT
                      ____________________________________________________________
consensus             GCGTTTTGTTGGACGAGAGGCTGTTGTCACCACTCAATGCTTGAATGGATGGTATGTGGT
 
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rJMSF046L20+          CAAGACATTGGACAACGCAGAGAGTGTAAAATTGCAGTATCGTTCCCTTGCAAAGGCGCC
rJMSF042D19+          CAAGACATTGGACAACGCAGAGAGTGTAAAATTGCAGTATCGTTCCCTTGCAAAGGCGCC
                      ____________________________________________________________
consensus             CAAGACATTGGACAACGCAGAGAGTGTAAAATTGCAGTATCGTTCCCTTGCAAAGGCGCC
 
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rJMSF046L20+          AGATCGTTCATCCTCGCAAACTATCTCGAGTAGCAAGACAGCCAACTGGCTGTAGTGTCG
rJMSF042D19+          AGATCGTTCATCCTCGCAAACTATCTCGAGTAGCAAGACAGCCAACTGGCTGTAGTGTCG
                      ____________________________________________________________
consensus             AGATCGTTCATCCTCGCAAACTATCTCGAGTAGCAAGACAGCCAACTGGCTGTAGTGTCG
 
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rJMSF046L20+          TTTTTCTCAGTGTAATCTAGCTTTTGTATTCTTTAAATGACTGCCAGCAAGGGGGTATAG
rJMSF042D19+          TTTTTCTCAGTGTAATCTAGCTTTTGTATTCTTTAAATGACTGCCAGCAAGGGGGTATAG
                      ____________________________________________________________
consensus             TTTTTCTCAGTGTAATCTAGCTTTTGTATTCTTTAAATGACTGCCAGCAAGGGGGTATAG
 
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rJMSF046L20+          ATGTATATTCTACAGAAATCAATGTAATATACACAAATGAGGATAGA             
rJMSF042D19+          ATGTATATTCTACAGAAATCAATGTAATATACACAAATGAGGATAGANGATGTGAATGAT
                      ____________________________________________________________
consensus             ATGTATATTCTACAGAAATCAATGTAATATACACAAATGAGGATAGANGATGTGAATGAT