Contig 007200:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012A10Sequence231010848 (2)ref|XP_009596277.1|2e-19PREDICTED: ABC transporter B family member 25-like [Nicotiana tomentosiformis]142007200 (2)
JMSF040P09Sequence649010848 (2)ref|XP_009596277.1|4e-78PREDICTED: ABC transporter B family member 25-like [Nicotiana tomentosiformis]611007200 (2)emb|CDP18058.1|9e-40unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P09+                                                          AGCCNGGAACCN
                      ____________________________________________________________
consensus                                                             AGCCNGGAACCN
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P09+          GTTNTTTTCAATTGTTCAATTGAAGNGAACNTTGCCTATGGCTTGGATGGGAAAGCAAGC
                      ____________________________________________________________
consensus             GTTNTTTTCAATTGTTCAATTGAAGNGAACNTTGCCTATGGCTTGGATGGGAAAGCAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P09+          CCGAGCGATATAGAAAATGCAGCTAAAATGGCAAATGCCCNCGAGTTNGTATCAAATTTT
                      ____________________________________________________________
consensus             CCGAGCGATATAGAAAATGCAGCTAAAATGGCAAATGCCCNCGAGTTNGTATCAAATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P09+          CCCGNCAAATNCCNAACNCATGNGGGNGAGCGTGGATTNCGGCTTTCAGGNGGTCAGAAA
                      ____________________________________________________________
consensus             CCCGNCAAATNCCNAACNCATGNGGGNGAGCGTGGATTNCGGCTTTCAGGNGGTCAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P09+          CNGNGAATCAATTGCGAGAGCTNTNCTGATGAATCCNAGGGTTTTACTTNTGGATGNGGC
                      ____________________________________________________________
consensus             CNGNGAATCAATTGCGAGAGCTNTNCTGATGAATCCNAGGGTTTTACTTNTGGATGNGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P09+          CCCNAGCNCCCTTGATGCCGAAAGNGAATNTNTTGTTCNGGATGCCNTGGNTTNTTTAAT
                      ____________________________________________________________
consensus             CCCNAGCNCCCTTGATGCCGAAAGNGAATNTNTTGTTCNGGATGCCNTGGNTTNTTTAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P09+          GAAAGGGNGGACNGTACTTGNGATAGCTCATAGGCTTTCAACTGTGAAAAGNGCAAATNC
                      ____________________________________________________________
consensus             GAAAGGGNGGACNGTACTTGNGATAGCTCATAGGCTTTCAACTGTGAAAAGNGCAAATNC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P09+          NGTAGCNGNGGTNTTTGATGGGCNGATAGTTGAGAGTGGGNGTCNTGATGNGCTTTTCNN
                      ____________________________________________________________
consensus             NGTAGCNGNGGTNTTTGATGGGCNGATAGTTGAGAGTGGGNGTCNTGATGNGCTTTTCNN
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012A10+                                              GTTGCNGGCTCCCAAAGACGGATA
rJMSF040P09+          CAAGGATGGCNTTTNTNCANCCCTAGTGAGGNGGCNGTTGCNGGCTCCCAAAGACGGATA
                      ____________________________________________________________
consensus             CAAGGATGGCNTTTNTNCANCCCTAGTGAGGNGGCNGTTGCNGGCTCCCAAAGACGGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012A10+          AAAATGGCCCTNCCTTNTAGCTGTTGTTTTTTTGAAGAAACAACTCTTGAACNCCTTTTT
rJMSF040P09+          AAAATGGCNCTNCCTTNTAGCTGTTGTTTTTTTGAAGAAACAACTCTTGAACTCC-TTTT
                      ____________________________________________________________
consensus             AAAATGGCCCTNCCTTNTAGCTGTTGTTTTTTTGAAGAAACAACTCTTGAACTCCTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012A10+          TTTTTTTTAGTGCAAAGGAAACAAAGTTTTCTTAAATGTAGTTGTAC             
rJMSF040P09+          TTTTTTTTAGTGCAAAGGAAACAAAGTTTTCTTAAATGTAGTTGTACACCTTGTACCTTT
                      ____________________________________________________________
consensus             TTTTTTTTAGTGCAAAGGAAACAAAGTTTTCTTAAATGTAGTTGTACACCTTGTACCTTT