Contig 007199:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040O15Sequence637013503 (3)ref|XP_011093152.1|5e-60PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 8-like [Ses735007199 (2)gb|ADV04059.1|5e-71DEAD/DEAH box helicase 8 [Hevea brasiliensis]
JMSF044L24Sequence748013503 (3)ref|XP_009794054.1|3e-124PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl703007199 (2)gb|ADV04059.1|1e-60DEAD/DEAH box helicase 8 [Hevea brasiliensis]

Alignment

This contig is upended


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rJMSF040O15+                                                       TTCTATATTCATGCA
                      ____________________________________________________________
consensus                                                          TTCTATATTCATGCA
 
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rJMSF044L24+                               AATAGAGTATTTCATGACTTCCGCAATGGTGCCNGTAGG
rJMSF040O15+          AAGATGCTTCAAGATCATCGGAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGTAGG
                      ____________________________________________________________
consensus             AAGATGCTTCAAGATCATCGGAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGTAGG
 
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rJMSF044L24+          AATCTTGTTTGTACTGATCTCTTTACAAGAGGAATAGATATTCAAGCAGTCAATGTTGTT
rJMSF040O15+          AATCTTGTTTGTACTGATCTCTTTACAAGAGGAATAGATATTCAAGCAGTCAATGTTGTT
                      ____________________________________________________________
consensus             AATCTTGTTTGTACTGATCTCTTTACAAGAGGAATAGATATTCAAGCAGTCAATGTTGTT
 
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rJMSF044L24+          ATCAACTTTGATTTCCCAAAGAATTCAGAAACATATCTACATAGGGTTGGACGGTCAGGG
rJMSF040O15+          ATCAACTTTGATTTCCCAAAGAATTCAGAAACATATCTACATAGGGTTGGACGGTCAGGG
                      ____________________________________________________________
consensus             ATCAACTTTGATTTCCCAAAGAATTCAGAAACATATCTACATAGGGTTGGACGGTCAGGG
 
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rJMSF044L24+          AGATTTGGACACCTTGGCCTAGCTGTAAATCTGATAACTTTTGAGGATCGCTTCAATCTC
rJMSF040O15+          AGATTTGGACACCTTGGCCTAGCTGTAAATCTGATAACTTTTGAGGATCGCTTCAATCTC
                      ____________________________________________________________
consensus             AGATTTGGACACCTTGGCCTAGCTGTAAATCTGATAACTTTTGAGGATCGCTTCAATCTC
 
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rJMSF044L24+          TATAGAATTGAGCAAGAACTTGGAACTGAGATCAAGCAAATTCCTCCACATATCGATCAA
rJMSF040O15+          TATAGAATTGAGCAAGAACTTGGAACTGAGATCAAGCAAATTCCTCCACATATCGATCAA
                      ____________________________________________________________
consensus             TATAGAATTGAGCAAGAACTTGGAACTGAGATCAAGCAAATTCCTCCACATATCGATCAA
 
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rJMSF044L24+          GGTATATACTGCCAGTGATCTGTGATGGACGCTTGGATTGAGGTTACCGGTGGTGGTTCC
rJMSF040O15+          GGTATATACTGCCAGTGATCTGTGATGGACGCTTGGATTGAGGTTACCGGTGGTGGTTCC
                      ____________________________________________________________
consensus             GGTATATACTGCCAGTGATCTGTGATGGACGCTTGGATTGAGGTTACCGGTGGTGGTTCC
 
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rJMSF044L24+          AGAGAATTTGGTGAGCTCCTTTCTGTGAAGGTACCTAACGTCTTAGGGGGCTACTTCGAA
rJMSF040O15+          AGAGAATTTGGTGAGCTCCTTTCTGTGAAGGTACCTAACGTCTTAGGGGGCTACTTCGAA
                      ____________________________________________________________
consensus             AGAGAATTTGGTGAGCTCCTTTCTGTGAAGGTACCTAACGTCTTAGGGGGCTACTTCGAA
 
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rJMSF044L24+          TGGAAACTGCGCTATCAGTCTTGGATTTGTTGCGCTTCGAGAATCCCACTATCCCGGAGT
rJMSF040O15+          TGGAAACTGCGCTATCAGTCTTGGATTTGTTGCGCTTCGAGAATCCCACTATCCCGGAGT
                      ____________________________________________________________
consensus             TGGAAACTGCGCTATCAGTCTTGGATTTGTTGCGCTTCGAGAATCCCACTATCCCGGAGT
 
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rJMSF044L24+          ACATATATCCCAAAACAGCTGATTGGTTTAGTTATTGTGAATGTATGATTGCTGCTGACT
rJMSF040O15+          ACATATATCCCAAAACAGCTGATTGGTTTAGTTATTGTGAATGTATGATTGCTGCTGACT
                      ____________________________________________________________
consensus             ACATATATCCCAAAACAGCTGATTGGTTTAGTTATTGTGAATGTATGATTGCTGCTGACT
 
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rJMSF044L24+          CTGTTTTTCACAAAAGAAAAAGTGTTCTCTCCATGGCCTGTATGATCATACTCATAAAGG
rJMSF040O15+          CTGTTTTTCACAAAAGAAAAAGTGTTCTCTCCATGGCCTGTATGATCATACTCATAAAGG
                      ____________________________________________________________
consensus             CTGTTTTTCACAAAAGAAAAAGTGTTCTCTCCATGGCCTGTATGATCATACTCATAAAGG
 
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rJMSF044L24+          GTTGATGACTTCCCCCTTTTATGTGCAGTGTGTTTCAGATCTTTCTTTATGCTTGTAGGC
rJMSF040O15+          GTTGATGACTTCCCCCTTTTATGTGCAGTGTGTTTCAGATCTTTCTTTATGCTTGTAGGC
                      ____________________________________________________________
consensus             GTTGATGACTTCCCCCTTTTATGTGCAGTGTGTTTCAGATCTTTCTTTATGCTTGTAGGC
 
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rJMSF044L24+          ATCAATTTGTAGAATTATTAGTGATGACTGATGTTCTCCATTGAACATCTTC        
rJMSF040O15+          ATCAATTTGTAGAATTATTAGTGATGACTGATGTTCTCCATTGAACATCTTCCAATGAGT
                      ____________________________________________________________
consensus             ATCAATTTGTAGAATTATTAGTGATGACTGATGTTCTCCATTGAACATCTTCCAATGAGT