Contig 007198:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014P11Sequence521010263 (5)ref|XP_009601923.1|3e-25PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic792007198 (9)ref|XP_009801460.1|6e-103PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic
JMFF018H22Sequence544010263 (5)ref|XP_009601923.1|3e-28PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic751007198 (9)emb|CBI27495.3|3e-85unnamed protein product [Vitis vinifera]
JMFF033O03Sequence504010263 (5)ref|XP_009601923.1|2e-16PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic750007198 (9)ref|XP_009801460.1|2e-103PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic
JMFF041N24Sequence631010263 (5)ref|XP_009801460.1|1e-46PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic575007198 (9)emb|CAN71209.1|5e-50hypothetical protein VITISV_030057 [Vitis vinifera]
JMFF044F13Sequence645010263 (5)ref|XP_009801460.1|3e-45PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic628007198 (9)emb|CDP07966.1|5e-75unnamed protein product [Coffea canephora]
JMFN011G06Sequence504007198 (9)emb|CAN71209.1|1e-40hypothetical protein VITISV_030057 [Vitis vinifera]
JMSF040L16Sequence697007198 (9)ref|XP_009801460.1|1e-122PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic816007198 (9)emb|CDP07966.1|1e-92unnamed protein product [Coffea canephora]
JMSF043C17Sequence773007198 (9)ref|XP_009801460.1|4e-114PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic

Alignment

This contig is upended


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JMSF040L16-                                                             AAAACGAGGG
                      ____________________________________________________________
consensus                                                               AAAACGAGGG
 
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JMSF040L16-           CCTCGAGTAGCAGCAACTGTGTATGAAAAGCTGGTTTCCCAGGGCTGTGAGCCAGGCCAA
rJMSF043C17+                                              TCCCAGGNCTGTGAGCCAGGCCAA
                      ____________________________________________________________
consensus             CCTCGAGTAGCAGCAACTGTGTATGAAAAGCTGGTTTCCCAGGGCTGTGAGCCAGGCCAA
 
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JMSF040L16-           GTTACCTATGCTTCAATCTTGAACATTTACTGCAGAATTGGGGTATACTCCAAGGCAGAA
rJMSF043C17+          GTTACCTATGCTTCAATCTTGAACATTTACTGCAGAATTGGGGTATACTCCAAGGCAGAA
rJMFF033O03+                                 CATTTACTGCAGAATTGGGGTATACTCCAAGGCAGAA
rJMFF018H22+                                  ATTTACTGCAGAATGGGGGTATACTCCAAGGCAGAA
rJMFF014P11+                                 CATTTACTGCAGAATTGGGGTATACTCCAAGGCAGAA
                      ____________________________________________________________
consensus             GTTACCTATGCTTCAATCTTGAACATTTACTGCAGAATTGGGGTATACTCCAAGGCAGAA
 
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JMSF040L16-           ATGACCTTTTCAGAAATGGAACAAAAGGGGTTTGATAAGTGCATTGTGGCCTATTCGAGC
rJMSF043C17+          ATGACCTTTTCAGAAATGGAACAAAAGGGGTTTGATAAGTGCATTGTGGCCTATTCGAGC
rJMFF033O03+          ATGACCTTTTCAGAAATGGANCAAAAGGGGTTTGATAAGTGCATTGTGGCCTATTCGAGC
rJMFF018H22+          ATGA-CTTTTCAGAAATGGAACAAAAGGGGTTTGATAAGTGCATTGTGGCCTATTCGAGC
rJMFF014P11+          ATGACCTTTTCAGAAATGGAACAAAAGGGGTTTGATAAGTGCATTGTGGCCTATTCGAGC
rJMSF040L16+                                        TTTGATAAGTGCATTGTGGCCTATTCGAGC
                      ____________________________________________________________
consensus             ATGACCTTTTCAGAAATGGAACAAAAGGGGTTTGATAAGTGCATTGTGGCCTATTCGAGC
 
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JMSF040L16-           ATGGTCAATATGTATGGCAAAA-CCGGCAGGCACAAAGAGGCAACGAGGCTCGTAGCCAA
rJMSF043C17+          ATGGTCAATATGTATGGCAAAA-CCGGCAGGCACAANGAGGCAACGAGGCTCGTAGCCAA
rJMFF033O03+          ATGGTCAATATGTATGGCAAAA-CCGGCAGGCACAAAGAGGCAACGAGGCTCGTAGCCAA
rJMFF018H22+          ATGGTCAATATGTATGGCAAAACCCGGCAGGCACAAAGAGGCANCGAGGCTCGTAGCCAA
rJMFF014P11+          ATGGTCAATATGTATGGCAAAA-CCGGCAGGCACAAAGAGGCAACGAGGCTCGTAGCCAA
rJMFF044F13+                                                               TAGCCAA
rJMSF040L16+          ATGGTCAATATGTATGGCAAAA-CCGGCAGGCACAAAGAGGCAACGAGGCTCGTAGCCAA
                      ____________________________________________________________
consensus             ATGGTCAATATGTATGGCAAAA-CCGGCAGGCACAAAGAGGCAACGAGGCTCGTAGCCAA
 
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JMSF040L16-           GATGAAGGAGAGGGGTTGCGAGCCGAACGTGTGGATTTACAACACGCTCTTGGACATCCA
rJMSF043C17+          GATGAAGGAGAGGGGTTGCGAGCCGAACGTGTGGATTTACAACACGCTCTTGGACATCCA
rJMFF033O03+          GATGAAGGAGAGGGGTTGCGAGCCGAACGTGTGGATTTACAACACGCTCTTGGACATCCA
rJMFF018H22+          GATGAAGGAGAGGGGTTGCGAGCCGAACGTGTGGATTTACAACACGCTCTTGGNCATCCA
rJMFF014P11+          GATGAAGGAGAGGGGTTGCGAGCCGAACGTGTGGATTTACAACACGCTCTTGGACATCCA
rJMFF044F13+          GATGAAGGAGAGGGGTTGCGAGCCGAACGTGTGGATNTACAACACGCTCTTGGACATCCA
rJMSF040L16+          GATGAAGGAGAGGGGTTGCGAGCCGAACGTGTGGATTTACAACACGCTCTTGGACATCCA
                      ____________________________________________________________
consensus             GATGAAGGAGAGGGGTTGCGAGCCGAACGTGTGGATTTACAACACGCTCTTGGACATCCA
 
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JMSF040L16-           CGGGAGGGCCTCGAACATGAAGCAAGTCGAGAAGGTATGGAAAGAGATGAAACGACGAAA
rJMSF043C17+          CGGGAGGGCCTCGAACATGAAGCAAGTCGAGAAGGTATGGAAAGAGATGAAACGACGAAA
rJMFF033O03+          CGGGAGGGCCTCGAACATGAAGCAAGTCGAGAAGGTATGGAAAGAGATGAAACGACGAAA
rJMFF018H22+          CGGGAGGGCCTCGAACATGAAGCAAGTCGAGAAGGTATGGAAAGAGATGAAACGNCGAAA
rJMFF014P11+          CGGGAGGGCCTCGAACATGAAGCAAGTCGAGAAGGTATGGAAAGAGATGAAACGACGAAA
rJMFF044F13+          CGGGAGGGCCTCGAACATGAAGCAAGTCGAGAAGGTATGGAAAGAGATGAAACGACGAAA
rJMFF041N24+                                                             ACGACGAAA
rJMSF040L16+          CGGGAGGGCCTCGAACATGAAGCAAGTCGAGAAGGTATGGAAAGAGATGAAACGACGAAA
                      ____________________________________________________________
consensus             CGGGAGGGCCTCGAACATGAAGCAAGTCGAGAAGGTATGGAAAGAGATGAAACGACGAAA
 
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JMSF040L16-           AGTCGTGCCAGACCGAGTTAGCTACACCAGCGTTATAAGCGCTTACAGCAAGGCCAAGGA
rJMSF043C17+          AGTCGTGCCAGACCGAGTTAGCTACACCAGCGTTATAAGCGCTTACAGCAAGGCCAAGGA
rJMFF033O03+          AGTCGTGCCAGACCGAGTTAGCTACACCAGCGTTATAAGCGCTTACAGCAAGGCCAAGGA
rJMFF018H22+          AGTCGTGCCAGACCGAGTTAGCTACACCAGCGTTATAAGCGCTTACAGCAAGGCCAAGGA
rJMFF014P11+          AGTCGTGCCAGACCGAGTTAGCTACACCAGCGTTATAAGCGCTTACAGCAAGGCCAAGGA
rJMFF044F13+          AGTCGTGCCAGACCGAGTTAGCTACACCAGCGTTATAAGCGCTTACAGCAAGGCCAAGGA
rJMFF041N24+          AGTCGTGCCAGACCGAGTTAGCTACACCAGCGTTATAAGCGCTTACAGCAAGGCCAAGGA
JMFN011G06-                                    ACCAGCGTTATAAGCGCTTACAGCAAGGCCAAGGA
rJMSF040L16+          AGTCGTGCCAGACCGAGTTAGCTACACCAGCGTTATAAGCGCTTACAGCAAGGCCAAGGA
                      ____________________________________________________________
consensus             AGTCGTGCCAGACCGAGTTAGCTACACCAGCGTTATAAGCGCTTACAGCAAGGCCAAGGA
 
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JMSF040L16-           GCTCGAGAGCTGCGTAAAATACTACCAAGACTTCAAGCTAAACGGGGGCAAGACTGACAG
rJMSF043C17+          GCTCGAGAGCTGCGTAAAATACTACCAAGACTTCAAGCTAAACGGGGGCAAGACTGNCAG
rJMFF033O03+          GCTCGAGAGCTGCGTAAAATACTACCAAGACTTCAAGCTAAACGGGGGCAAGACTGACAG
rJMFF018H22+          GCTCGAGAGCTGCGTAAAATACTACCAAGACTTCAAGCTAAACGGGGGCAAGACTGACAG
rJMFF014P11+          GCTCGAGAGCTGCGTAAAATACTACCAAGACTTCAAGCTAAACGGGGGCAAGACTGACAG
rJMFF044F13+          GCTCGAGAGCTGCGTAAAATACTACCAAGACTTCAAGCTAAACGGGGGCAAGACTGACAG
rJMFF041N24+          GCTCGAGAGCTGCGTAAAATACTACCAAGACTTCAAGCTAAACGGGGGCAAGACTGACAG
JMFN011G06-           GCTCGAGAGCTGCGTAAAATACTACCAAGACTTCAAGCTAAACGGGGTCAAGACTGACAG
rJMSF040L16+          GCTCGAGAGCTGCGTAAAATACTACCAAGACTTCAAGCTAAACGGGGGCAAGACTGACAG
                      ____________________________________________________________
consensus             GCTCGAGAGCTGCGTAAAATACTACCAAGACTTCAAGCTAAACGGGGGCAAGACTGACAG
 
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JMSF040L16-           GGCGATGGCCGGGATAATGGTCGGGGTTTTCTCGAAGATGAACAAAGTCGACGAATTGGT
rJMSF043C17+          GGCGATGGCCGGGATAATGGTCGGGGTTTTCTCGAAGATGAACAAAGTCGACGAATTGGT
rJMFF033O03+          GGCGATGGCCGGGATAATGGTCGGGGTTTTCTCGAAGATGAACAAAGTCGACGAATTGGT
rJMFF018H22+          GGCGATGGCCGGGATAATGGTCGGGGTTTTCTCGAAGATGAACAAAGTCGACGAATTGGT
rJMFF014P11+          GGCAATGGCCGGGATAATGGTCGGGGTTTTCTCGAAGATGAACAAAGTCGACGAATTGGT
rJMFF044F13+          GGCGATGGCCGGGATAATGGTCGGGGTTTTCTCGAAGATGAACAAAGTCGACGAATTGGT
rJMFF041N24+          GGCGATGGCCGGGATAATGGTCGGGGTTTTCTCGAAGATGAACAAAGTCGACGAATTGGT
JMFN011G06-           GGCGATGGCCGGGATAATGGTCGGGGTTTTCTCGAAGATGAACAAAGTCGACGAATTGGT
rJMSF040L16+          GGCGATGGCCGGGATAATGGTCGGGGTTTTCTCGAAGATGAACAAAGTCGACGAATTGGT
                      ____________________________________________________________
consensus             GGCGATGGCCGGGATAATGGTCGGGGTTTTCTCGAAGATGAACAAAGTCGACGAATTGGT
 
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JMSF040L16-           TAAACTGTTGCAGGATTTGAAGACCGATGAGACCAAGCTGGACGAGAGGCTTTACCGGTC
rJMSF043C17+          TAAACTGTTGCAGGATTTGAAGACCGATGAGACCAAGCTGGACGAGAGGCTTTACCGGTC
rJMFF033O03+          TAAACTGTTGCAGGATTTGAAGACCGATGAGACCAAGCTGGACGAGAGGCTTTACCGGTC
rJMFF018H22+          TAAACTGTTGCAGGATTTGAAGACCGATGAGACCAAGCTGGACGAGAGGCTTTACCGGTC
rJMFF014P11+          TAAACTGTTGCAGGATTTGAAGACCGATGAGACCAAGCTGGACGAGAGGCTTTACCGGTC
rJMFF044F13+          TAAACTGTTGCAGGATTTGAAGACCGATGAGACCAAGCTGGACGAGAGGCTTTACCGGTC
rJMFF041N24+          TAAACTGTTGCAGGATTTGAAGACCGATGAGACCAAGCTGGACGAGAGGCTTTACCGGTC
JMFN011G06-           TAAACTGTTGCAGGATTTGAAGACCGATGAGACCAAGCTGGACGAGAGGCTTTACCGGTC
rJMSF040L16+          TAAACTGTTGCAGGATTTGAAGACCGATGAGACCAAGCTGGACGAGAGGCTTTACCGGTC
                      ____________________________________________________________
consensus             TAAACTGTTGCAGGATTTGAAGACCGATGAGACCAAGCTGGACGAGAGGCTTTACCGGTC
 
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JMSF040L16-           TGCTCTGAATGCTCTGAGAGACGCGGGGCTGGAAATTCGAGCAAAATGGCTGCAGGAAAG
rJMSF043C17+          TGCTCTGAATGCTCTGAGAGACGCGGGGCTGGAAATTCGAGCAAAATGGCTGCAGGAAAG
rJMFF033O03+          TGCTCTGAATGCTCTGAGAGACGCGGGGCTGGAAATTCGAGCAAAATGGCTGCAGGAAAG
rJMFF018H22+          TGCTNTGAATGCTCTGAGAGACGCGGGGCTGGAAATTCGAGCAAAATGGCTGCAGGAAAG
rJMFF014P11+          TGCTCTGAATGCTCTGAGAGACGCGGGGCTGGAAATTCGAGCAAAATGGCTGCAGGGAAG
rJMFF044F13+          TGCTCTGAATGCTCTGAGAGACGCGGGGCTGGAAATTCGAGCAAAATGGCTGCAGGAAAG
rJMFF041N24+          TGCTCTGAATGCTCTGAGAGACGCGGGGCTGGAAATTCGAGCAAAATGGCTGCAGGAAAG
JMFN011G06-           TGCTCTGAATGCTCTGAGAGACGCGGGGCTGGAAATTCGAGCAAAATGGCTGCAGGAAAG
rJMSF040L16+          TGCTCTGAATGCTCTGAGAGACGCGGGGCTGGAAATTCGAGCAAAATGGCTGCAGGAAAG
                      ____________________________________________________________
consensus             TGCTCTGAATGCTCTGAGAGACGCGGGGCTGGAAATTCGAGCAAAATGGCTGCAGGAAAG
 
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JMSF040L16-           CTTTGCTGTTGCAACATAAATCATTTCC                                
rJMSF043C17+          CTTTGCTGTTGCAACATAAATCATTTCCTGCAATTCTGCAAAGAAGAAGCCTAAGAACAT
rJMFF033O03+          CTTTGCTGTTGCAACATAAATCATTTCCTGCAATTCTGCAAAGAAGAAGCCTAAGAACAT
rJMFF018H22+          CTTTGCTGTTGCAACATAAATCATTTCCTGCAATTNTGCAAAGAAGAAGCCTAAGAACAT
rJMFF014P11+          CTTTGCTGTTGCAACATAAATCATTTCCTGCAATTCTGCAAAGAAGAAGCCTAAGAACAT
rJMFF044F13+          CTTTGCTGTTGCAACATAAATCATTTCCTGCAATTCTGCAAAGAAGAAGCCTAAGAACAT
rJMFF041N24+          CTTTGCTGTTGCAACATAAATCATTTCCTGCAATTCTGCAAAGAAGAAGCCTAAGAACAT
JMFN011G06-           CTTTGCTGTTGCAACATAAATCATTTCCTGCAATTCTGCAAAGAAGAAGCCTAAGAACAT
rJMSF040L16+          CTTTGCTGTTGCAACATAAATCATTTCCTGCAATTCTGCAAAGAAGAAGCCTAAGAACAT
                      ____________________________________________________________
consensus             CTTTGCTGTTGCAACATAAATCATTTCCTGCAATTCTGCAAAGAAGAAGCCTAAGAACAT
 
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rJMSF043C17+          TGTAAATACAAGGTGGAGANTTAGCTTATCTGAAACATTGGTTTAAGGTTTNAAGGTTGT
rJMFF033O03+          TGTAAATACAAGGTGGAGAATTAGCTTATCTGAAACATTGGTTTAAGGTTTTAAGGTTGT
rJMFF018H22+          TGTAAATACAAGGTGGAGAATTAGCTTATCTGAAACATTGGTTTAAGGTTTTAAGGTTGT
rJMFF014P11+          TGTAAATACAAGGTGGAGAATTAGCTTATCTGAAACATTGGTTTAAGGTTTTAAGGTTGT
rJMFF044F13+          TGTAAATACAAGGTGGAGAATTAGCTTATCTGAAACATTGGTTTAAGGTTTTAAGGTTGT
rJMFF041N24+          TGTAAATACAAGGTGGAGAATTAGCTTATCTGAAACATTGGTTTAAGGTTTTAAGGTTGT
JMFN011G06-           TGTAAATACAAGGTGGAGAATTAGCTTATCTGAAACATTGGTTTAAGGTTTTAAGGTTGT
rJMSF040L16+          TGTAAATACAAGGTGGAGAATTAGCTTATCTGAAACATTGGTTTAAGGTTTTAAGGTTGT
                      ____________________________________________________________
consensus             TGTAAATACAAGGTGGAGAATTAGCTTATCTGAAACATTGGTTTAAGGTTTTAAGGTTGT
 
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rJMSF043C17+          ACCCCCAAACCTTTGTAACCATCCACTTGC                              
rJMFF033O03+          ACCCCCAAACCTTTGTAACCATCCACTTGCTGTTTA                        
rJMFF018H22+          ACCCCCAAACCTTTGTAACCATCCACTTGCTGTTTATGAAAGTTACAAAGAAGCCA    
rJMFF014P11+          ACCCCCAAACCTTTGTAACCATCCACTTGCTGTTTATGAAAGTTACAAAGAAGCCATACT
rJMFF044F13+          ACCCCCAAACCTTTGTAACCATCCACTTGCTGTTTATGAAAGTTACAAAGAAGC      
rJMFF041N24+          ACCCCCAAACCTTTGTAACCATCCACTTGCTGTTTATGAAAGTTACAAAGAAGCCATACT
JMFN011G06-           ACCCCCAAACCTTTGTAACCATCCACTTGCTGTTTATGAAAGTTACAAAGAAGCCATACT
rJMSF040L16+          ACCCCCAAACCTTTGTAACCATCCACTTGCTGTTTATGAAAGTTACAAAGAAGCCATACT
                      ____________________________________________________________
consensus             ACCCCCAAACCTTTGTAACCATCCACTTGCTGTTTATGAAAGTTACAAAGAAGCCATACT
 
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rJMFF014P11+          TTCCCATTGTGCAGACAACTTCATTAATCATACATA                        
rJMFF041N24+          TTCCCATTGTGCAGACAACTTCATTAATCATACATATGTTTTTTGTTTT           
JMFN011G06-           TTCCCATTGTGCAGACAACTTCATTAATCATACATATGTTTTTTGTTTT           
rJMSF040L16+          TTCCCATTGTGCAGACAACTTCATTAATCATACATATGTTTTTTGTTTTACTACTACGCC
                      ____________________________________________________________
consensus             TTCCCATTGTGCAGACAACTTCATTAATCATACATATGTTTTTTGTTTTACTACTACGCC
 
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rJMSF040L16+          AAAAGCTACGGCGAGTAGCGAATGATGTAATAACTTTATTTCTTTTATACCTGTCACAAT
                      ____________________________________________________________
consensus             AAAAGCTACGGCGAGTAGCGAATGATGTAATAACTTTATTTCTTTTATACCTGTCACAAT