Contig 007196:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN006I20Sequence527007196 (3)ref|XP_009613566.1|4e-59PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Nicotiana tomentosiformis]
JMSF040I05Sequence626007196 (3)ref|XP_009613566.1|1e-58PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Nicotiana tomentosiformis]583007196 (3)ref|XP_009613566.1|7e-59PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFN006I20+                                                            GAAGCTGACAT
JMSF040I05+                                             TTTTTTTTTTAATTTGAAGCTGACAT
                      ____________________________________________________________
consensus                                               TTTTTTTTTTAATTTGAAGCTGACAT
 
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JMFN006I20+           TTGAGAATTAAGGCATTCAGATCTGAGTGTGTAATCTCTTTCTGGGATACAACTACATGA
JMSF040I05+           TTGAGAATTAAGGCATTCAGATCTGAGTGTGTAATCTCTTTCTGGGATACAACTACATGA
rJMSF040I05-                           CAGATCTGAGTGTGTAATCTCTTTCTGGGATACAACTACATGA
                      ____________________________________________________________
consensus             TTGAGAATTAAGGCATTCAGATCTGAGTGTGTAATCTCTTTCTGGGATACAACTACATGA
 
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JMFN006I20+           TTCAATATCCTTAGGAGATGTCAATAACAAATTCACAGTACAAATACTTGCAGCTAAAAT
JMSF040I05+           TTCAATATCCTTAGGAGATGTCAATAACAAATTCACAGTACAAATACTTGCAGCTAAAAT
rJMSF040I05-          TTCAATATCCTTAGGAGATGTCAATAACAAATTCACAGTACAAATACTTGCAGCTAAAAT
                      ____________________________________________________________
consensus             TTCAATATCCTTAGGAGATGTCAATAACAAATTCACAGTACAAATACTTGCAGCTAAAAT
 
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JMFN006I20+           ATTTGAAACATGAAACCTTCCTTCATGGGAGAAAATATCCACAGATCGAATTTATCCACC
JMSF040I05+           ATTTGAAACATGAAACCTTCCTTCATGGGAGAAAATATCCACAGATCGAATTTATCCACC
rJMSF040I05-          ATTTGAAACATGAAACCTTCCTTCATGGGAGAAAATATCCACAGATCGAATTTATCCACC
                      ____________________________________________________________
consensus             ATTTGAAACATGAAACCTTCCTTCATGGGAGAAAATATCCACAGATCGAATTTATCCACC
 
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JMFN006I20+           TCGAGCTTCTCTCCTTGTCGCATCATGAAGCAGTTCAATGTCCACTCCTTCTGGTGGTAA
JMSF040I05+           TCGAGCTTCTCTCCTTGTCGCATCATGAAGCAGTTCAATGTCCACTCCTTCTGGTGGTAA
rJMSF040I05-          TCGAGCTTCTCTCCTTGTCGCATCATGAAGCAGTTCAATGTCCACTCCTTCTGGTGGTAA
                      ____________________________________________________________
consensus             TCGAGCTTCTCTCCTTGTCGCATCATGAAGCAGTTCAATGTCCACTCCTTCTGGTGGTAA
 
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JMFN006I20+           CTGGACATATCTCACCACTGAGCCTCTGATGAAACAGTTCCTCACCGAAAGCATGTGAGG
JMSF040I05+           CTGGACATATCTCACCACTGAGCCTCTGATGAAACAGTTCCTCACCGAAAGCATGTGAGG
rJMSF040I05-          CTGGACATATCTCACCACTGAGCCTCTGATGAAACAGTTCCTCACCGAAAGCATGTGAGG
                      ____________________________________________________________
consensus             CTGGACATATCTCACCACTGAGCCTCTGATGAAACAGTTCCTCACCGAAAGCATGTGAGG
 
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JMFN006I20+           GAACTTGTCTTGATCAACAACCCTAGTATTCTCGAGCTTAATATTGAGGTATTGATCGAC
JMSF040I05+           GAACTTGTCTTGATCAACAACCCTAGTATTCTCGAGCTTAATATTGAGGTATTGATCGAC
rJMSF040I05-          GAACTTGTCTTGATCAACAACCCTAGTATTCTCGAGCTTAATATTGAGGTATTGATCGAC
                      ____________________________________________________________
consensus             GAACTTGTCTTGATCAACAACCCTAGTATTCTCGAGCTTAATATTGAGGTATTGATCGAC
 
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JMFN006I20+           GGAGTGAAGGGTGCCCCTTATTGCCAAATCGTTCTTTAGTTCCACCGTCACTTCTCTCCC
JMSF040I05+           GGAGTGAAGGGTGCCCCTTATTGCCAAATCGTTCTTTAGTTCCACCGTCACTTCTCTCCC
rJMSF040I05-          GGAGTGAAGGGTGCCCCTTATTGCCAAATCGTTCTTTAGTTCCACCGTCACTTCTCTCCC
                      ____________________________________________________________
consensus             GGAGTGAAGGGTGCCCCTTATTGCCAAATCGTTCTTTAGTTCCACCGTCACTTCTCTCCC
 
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JMFN006I20+           GACCAAATCTTTGAAATACGAGAAGAACAACATTTTTCTTGTTGAGAAATCTCTCTACTG
JMSF040I05+           GACCAAATCTTTGAAATACGAGAAGAACAACATTTTTCTTGTTGAGAAATCTCTCTACTG
rJMSF040I05-          GACCAAATCTTTGAAATACGAGAAGAACAACATTTTTCTTGTTGAGAAATCTCTCTACTG
                      ____________________________________________________________
consensus             GACCAAATCTTTGAAATACGAGAAGAACAACATTTTTCTTGTTGAGAAATCTCTCTACTG
 
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JMFN006I20+           CAAGCTCCGGCGCGGTTTGACGATGAAAGGAGAAAA                        
JMSF040I05+           CAAGCTCCGGCGCGGTTTGACGATGAAAGGAGAAAACAAGCGCTGCCCTTACAGCGTTGT
rJMSF040I05-          CAAGCTCCGGCGCGGTTTGACGATGAAAGGAGAAAACAAGCGCTGCCCTTACAGCGTTGT
                      ____________________________________________________________
consensus             CAAGCTCCGGCGCGGTTTGACGATGAAAGGAGAAAACAAGCGCTGCCCTTACAGCGTTGT
 
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JMSF040I05+           GTCACTCGACTCACTTCTACTGCCCGGAAACGAACCCGTTTAACATCAAATTTGGCGGCC
rJMSF040I05-          GTCACTCGACTCACTTCTACTGCCCGGAAACGAACCCGTTTAACATCAAATTTGGCGGCC
                      ____________________________________________________________
consensus             GTCACTCGACTCACTTCTACTGCCCGGAAACGAACCCGTTTAACATCAAATTTGGCGGCC