| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF023M23 | Sequence | 596 | 003674 (5) | ref|XP_010316978.1| | 6e-34 | PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic-like i | 738 | 007189 (2) | ref|XP_009589769.1| | 9e-63 | PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic-like i |
| JMSF038I13 | Sequence | 650 | 003674 (5) | ref|XP_010316978.1| | 5e-46 | PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic-like i | 939 | 007189 (2) | ref|XP_009589769.1| | 3e-79 | PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic-like i |
This contig is upended
. : . : . : . : . : . :
rJMSF038I13+ GTCAAGTAATCAGTTTTCACATATGCTATTATACCTGAA
____________________________________________________________
consensus GTCAAGTAATCAGTTTTCACATATGCTATTATACCTGAA
. : . : . : . : . : . :
rJMSF038I13+ ATCAAGAGGGTTCTATTCCTTAAAGTACCTGAAACCACGCAAAGGACTGTTGATGTTAGA
____________________________________________________________
consensus ATCAAGAGGGTTCTATTCCTTAAAGTACCTGAAACCACGCAAAGGACTGTTGATGTTAGA
. : . : . : . : . : . :
rJMSF038I13+ GATTGATCGTGTAGCACAGGACTTCCAAGGTCCACAGAGATGAGATACATTCAAAGCTTG
____________________________________________________________
consensus GATTGATCGTGTAGCACAGGACTTCCAAGGTCCACAGAGATGAGATACATTCAAAGCTTG
. : . : . : . : . : . :
rJMSF023M23+ TACGCAGTTTGCCACAAATGGTTGAGA
rJMSF038I13+ TACAGATTATGAGGGAACGATTGCTAATCCACCTACGCAGTTTGCCACAAATGGTTGAGA
____________________________________________________________
consensus TACAGATTATGAGGGAACGATTGCTAATCCACCTACGCAGTTTGCCACAAATGGTTGAGA
. : . : . : . : . : . :
rJMSF023M23+ ACTGGAGTAGGCAAGAAGATACTGATTCACAGCCGAGTCAGTTTGTTCGTTCTATTACAA
rJMSF038I13+ ACTGGAGTAGGCAAGAAGATACTGATTCACAGCCGAGTCAGTTTGTTCGTTCTATTACAA
____________________________________________________________
consensus ACTGGAGTAGGCAAGAAGATACTGATTCACAGCCGAGTCAGTTTGTTCGTTCTATTACAA
. : . : . : . : . : . :
rJMSF023M23+ AGGAAGTCGGTCTTCTTCAACGTGTGTTATCTCGAACTCTGCATGAAGTAGATGTTCAAA
rJMSF038I13+ AGGAAGTCGGTCTTCTTCAACGTGTGTTATCTCGAACTCTGCATGAAGTAGATGTTCAAA
____________________________________________________________
consensus AGGAAGTCGGTCTTCTTCAACGTGTGTTATCTCGAACTCTGCATGAAGTAGATGTTCAAA
. : . : . : . : . : . :
rJMSF023M23+ CTATTTTCAGGCAAGTGGTGCAAATCTTTCACACCCAAATTTCAGAAGCACTGTCACGCG
rJMSF038I13+ CTATTTTCAGGCAAGTGGTGCAAATCTTTCACACCCAAATTTCAGAAGCACTGTCACGCG
____________________________________________________________
consensus CTATTTTCAGGCAAGTGGTGCAAATCTTTCACACCCAAATTTCAGAAGCACTGTCACGCG
. : . : . : . : . : . :
rJMSF023M23+ TTGATATCAGTACTCCTCAAGTGAAGAACCGAATGCATCGTGATGTTCAACATATTCTCG
rJMSF038I13+ TTGATATCAGTACTCCTCAAGTGAAGAACCGAATGCATCGTGATGTTCAACATATTCTCG
____________________________________________________________
consensus TTGATATCAGTACTCCTCAAGTGAAGAACCGAATGCATCGTGATGTTCAACATATTCTCG
. : . : . : . : . : . :
rJMSF023M23+ GGTGTATCAGATCATTGCCATCTGATGAATTGAGTAAATCAAATCCACCTAATTGGGGGA
rJMSF038I13+ GGTGTATCAGATCATTGCCATCTGATGAATTGAGTAAATCAAATCCACCTAATTGGGGGA
____________________________________________________________
consensus GGTGTATCAGATCATTGCCATCTGATGAATTGAGTAAATCAAATCCACCTAATTGGGGGA
. : . : . : . : . : . :
rJMSF023M23+ AGCTTGATGAATTTGTGGAGCAAAATTTTGGTGCAGAAGCCAGTTAATAGGTTCCTTGTA
rJMSF038I13+ AGCTTGATGAATTTGTGGAGCAAAATTTTGGTGCAGAAGCCAGTTAATAGGTTCCTTGTA
____________________________________________________________
consensus AGCTTGATGAATTTGTGGAGCAAAATTTTGGTGCAGAAGCCAGTTAATAGGTTCCTTGTA
. : . : . : . : . : . :
rJMSF023M23+ GATAGTTATTTGATAAATTGGATGCAGACTTCAGTGGTGTTTTAGGAGCAAATGAGCTAC
rJMSF038I13+ GATAGTTATTTGATAAATTGGATGCAGACTTCAGTGGTGTTTTAGGAGCAAATGAGCTAC
____________________________________________________________
consensus GATAGTTATTTGATAAATTGGATGCAGACTTCAGTGGTGTTTTAGGAGCAAATGAGCTAC
. : . : . : . : . : . :
rJMSF023M23+ CAAGGATTTCCTGAAGCCCATGCATCAATGCTACACTAATGATGAGATGTGCAGTCTACT
rJMSF038I13+ CAAGGATTTCCTGAAGCCCATGCATCAATGCTACACTAATGATGAGATGTGCAGTCTACT
____________________________________________________________
consensus CAAGGATTTCCTGAAGCCCATGCATCAATGCTACACTAATGATGAGATGTGCAGTCTACT
. : . : . : . : . : . :
rJMSF023M23+ GAATGGATATAGTACTACTGTAACAAATTCAAATTTTTGAAGTGAGAAAGATTCAATAGC
rJMSF038I13+ GAATGGATATAGTACTACTGTAACAAATTCAAATTTTTGAAGTGAGAAAGATTCAATAGC
____________________________________________________________
consensus GAATGGATATAGTACTACTGTAACAAATTCAAATTTTTGAAGTGAGAAAGATTCAATAGC
. : . : . : . : . : . :
rJMSF023M23+ AACAGTTTGTAGTTTTCATGTACACAATTTGAAATGAGCCATATGTTTTTTTCTGAGATT
rJMSF038I13+ AACAGTTTGTAGTTTTCATGTACACAATTTGAAATGAGCCATATGTTTTTTTCTGAGATT
____________________________________________________________
consensus AACAGTTTGTAGTTTTCATGTACACAATTTGAAATGAGCCATATGTTTTTTTCTGAGATT
. : . : . : . : . : . :
rJMSF023M23+ GTATTATTTCGGCTTCTTGGACTTCTGCCCTCTTCTCAAATTCCTTATTAATATATATAA
rJMSF038I13+ GTATTATTTCGGCTTCTTGGACTTCTGCCCTCTTCTCAAATTCCTTATTAATATATATAA
____________________________________________________________
consensus GTATTATTTCGGCTTCTTGGACTTCTGCCCTCTTCTCAAATTCCTTATTAATATATATAA
. : . : . : . : . : . :
rJMSF023M23+ CTTAGGGCACCATATGTTCTCCCAGAAGGCTGAATAATTGCC
rJMSF038I13+ CTTAGGGCACCATATGTTCTCCCAGAAGGCTGAATAATTGCCCAACCATATCTTGTAATT
____________________________________________________________
consensus CTTAGGGCACCATATGTTCTCCCAGAAGGCTGAATAATTGCCCAACCATATCTTGTAATT