| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF013D14 | Sequence | 381 | 010627 (4) | ref|XP_004233324.1| | 3e-18 | PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Solanum ly | 723 | 007186 (4) | ref|XP_009614825.1| | 1e-60 | PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Nicotiana |
| JMSF027M14 | Sequence | 679 | 010627 (4) | ref|XP_006357158.1| | 5e-86 | PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like isofor | 722 | 007186 (4) | ref|XP_002274196.2| | 3e-60 | PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Vitis vini |
| JMSF028E17 | Sequence | 650 | 010627 (4) | ref|XP_006357158.1| | 4e-81 | PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like isofor | 694 | 007186 (4) | ref|XP_002274196.2| | 1e-59 | PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Vitis vini |
| JMSF037P16 | Sequence | 679 | 010627 (4) | ref|XP_006357158.1| | 2e-86 | PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like isofor | 691 | 007186 (4) | ref|XP_002274196.2| | 1e-57 | PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Vitis vini |
This contig is upended
. : . : . : . : . : . :
rJMSF028E17+ TTTTCCGTATTACCAGATTCATCG
____________________________________________________________
consensus TTTTCCGTATTACCAGATTCATCG
. : . : . : . : . : . :
rJMSF028E17+ ATCCCAACCAAGCTTTTAATCTGGGTTTCACTTTCGCTGGTCAGCCTCTTGATCTTGCAA
rJMSF027M14+ AA
rJMSF013D14+ AA
____________________________________________________________
consensus ATCCCAACCAAGCTTTTAATCTGGGTTTCACTTTCGCTGGTCAGCCTCTTGATCTTGCAA
. : . : . : . : . : . :
rJMSF028E17+ GTTATAATTGGCTCCCCGGTTTCATTCACCCACGATAATCAGGCTCAAAGTACTGAATGG
rJMSF027M14+ GTTATAATTGGCTCCCCGGTTTCATTCACCCACGATAATCAGGCTCAAAGTACTGAATGG
rJMSF013D14+ GTTATAATTGGCTCCCCGGTTTCATTCACCCACGATAATCAGGCTCAAAGTACTGAATGG
rJMSF037P16+ CCACGATAATCAGGCTCAAAGTACTGAATGG
____________________________________________________________
consensus GTTATAATTGGCTCCCCGGTTTCATTCACCCACGATAATCAGGCTCAAAGTACTGAATGG
. : . : . : . : . : . :
rJMSF028E17+ GCTCTATTGAAATCAGTGACAATTGCTGCTGCCTTCATTGGACTGTGCCTTATGTCAGTC
rJMSF027M14+ GCTCTATTGAAATCAGTGACAATTGCTGCTGCCTTCATTGGACTGTGCCTTATGTCAGTC
rJMSF013D14+ GCTCTATTGAAATCAGTGACAATTGCTGCTGCCTTCATTGGACTGTGCCTTATGTCAGTC
rJMSF037P16+ GCTCTATTGAAATCAGTGACAATTGCTGCTGCCTTCATTGGACTGTGCCTTATGTCAGTC
____________________________________________________________
consensus GCTCTATTGAAATCAGTGACAATTGCTGCTGCCTTCATTGGACTGTGCCTTATGTCAGTC
. : . : . : . : . : . :
rJMSF028E17+ ATAAACTTTGCAACTGCAGAAATTGGAGCAGTGATACTAGTCCCAATGTGTTTGATGGCT
rJMSF027M14+ ATAAACTTTGCAACTGCAGAAATTGGAGCAGTGATACTAGTCCCAATGTGTTTGATGGCT
rJMSF013D14+ ATAAACTTTGCAACTGCAGAAATTGGAGCAGTGATACTAGTCCCAATGTGTTTGATGGCT
rJMSF037P16+ ATAAACTTTGCAACTGCAGAAATTGGAGCAGTGATACTAGTCCCAATGTGTTTGATGGCT
____________________________________________________________
consensus ATAAACTTTGCAACTGCAGAAATTGGAGCAGTGATACTAGTCCCAATGTGTTTGATGGCT
. : . : . : . : . : . :
rJMSF028E17+ AGACCTTTAAGGCTCGAGGCCAGAGCTATGACTTTGAAGGCATTTGCCAGGGCAGCTTGT
rJMSF027M14+ AGACCTTTAAGGCTCGAGGCCAGAGCTATGACTTTGAAGGCATTTGCCAGGGCAGCTTGT
rJMSF013D14+ AGACCTTTAAGGCTCGAGGCCAGAGCTATGACTTTGAAGGCATTTGCCAGGGCAGCTTGT
rJMSF037P16+ AGACCTTTAAGGCTCGAGGCCAGAGCTATGACTTTGAAGGCATTTGCCAGGGCAGCTTGT
____________________________________________________________
consensus AGACCTTTAAGGCTCGAGGCCAGAGCTATGACTTTGAAGGCATTTGCCAGGGCAGCTTGT
. : . : . : . : . : . :
rJMSF028E17+ AATCTGTTCTTCTTGTTGCTGGGTTTTCCTCCAGTTGCCTTCATCGTTTTCAAAGGTTTG
rJMSF027M14+ AATCTGTTCTTCTTGTTGCTGGGTTTTCCTCCAGTTGCCTTCATCGTTTTCAAAGGTTTG
rJMSF013D14+ AATCTGTTCTTCTTGTTGCTGGGTTTTCCTCCAGTTGCCTTCATCGTTTTCAAAGGTTTG
rJMSF037P16+ AATCTGTTCTTCTTGTTGCTGGGTTTTCCTCCAGTTGCCTTCATCGTTTTCAAAGGTTTG
____________________________________________________________
consensus AATCTGTTCTTCTTGTTGCTGGGTTTTCCTCCAGTTGCCTTCATCGTTTTCAAAGGTTTG
. : . : . : . : . : . :
rJMSF028E17+ TTGGAAGGATTTAACAATCTTGTAGTTAGTGACTTGTGGAACTGGGTCGAGTCCCTTTGG
rJMSF027M14+ TTGGAAGGATTTAACAATCTTGTAGTTAGTGACTTGTGGAACTGGGTCGAGTCCCTTTGG
rJMSF013D14+ TTGGAAGGATTTAACAATCTTGTAGTTAGTGACTTGTGGAACTGGGTCGAGTCCCTTTGG
rJMSF037P16+ TTGGAAGGATTTAACAATCTTGTAGTTAGTGACTTGTGGAACTGGGTCGAGTCCCTTTGG
____________________________________________________________
consensus TTGGAAGGATTTAACAATCTTGTAGTTAGTGACTTGTGGAACTGGGTCGAGTCCCTTTGG
. : . : . : . : . : . :
rJMSF028E17+ TTGTGGGGCAGTGCGACGTACATTTATATATGCATGGTTCACATACCATGCTGGGTTTTG
rJMSF027M14+ TTGTGGGGCAGTGCGACGTACATTTATATATGCATGGTTCACATACCATGCTGGGTTTTG
rJMSF013D14+ TTGTGGGGCAGTGCGACGTACATTTATATATGCATGGTTCACATACCATGCTGGGTTTTG
rJMSF037P16+ TTGTGGGGCAGTGCGACGTACATTTATATATGCATGGTTCACATACCATGCTGGGTTTTG
____________________________________________________________
consensus TTGTGGGGCAGTGCGACGTACATTTATATATGCATGGTTCACATACCATGCTGGGTTTTG
. : . : . : . : . : . :
rJMSF028E17+ TGCATCCGTACACTACTGCATAATTTCTGATCCATTCCCAGGTTCCTCCATCTGCATTGG
rJMSF027M14+ TGCATCCGTACACTACTGCATAATTTCTGATCCATTCCCAGGTTCCTCCATCTGCATTGG
rJMSF013D14+ TGCATCCGTACACTACTGCATAATTTCTGATCCATTCCCAGGTTCCTCCATCTGCATTGG
rJMSF037P16+ TGCATCCGTACACTACTGCATAATTTCTGATCCATTCCCAGGTTCCTCCATCTGCATTGG
____________________________________________________________
consensus TGCATCCGTACACTACTGCATAATTTCTGATCCATTCCCAGGTTCCTCCATCTGCATTGG
. : . : . : . : . : . :
rJMSF028E17+ TGTACTAGCAAAAGAATGACTTTAGTTTCCCATGTATCCAAGTTTTGTTAGATTGCAAAT
rJMSF027M14+ TGTACTAGCAAAAGAATGACTTTAGTTTCCCATGTATCCAAGTTTTGTTAGATTGCAAAT
rJMSF013D14+ TGTACTAGCAAAAGAATGACTTTAGTTTCCCATGTATCCAAGTTTTGTTAGATTGCAAAT
rJMSF037P16+ TGTACTAGCAAAAGAATGACTTTAGTTTCCCATGTATCCAAGTTTTGTTAGATTGCAAAT
____________________________________________________________
consensus TGTACTAGCAAAAGAATGACTTTAGTTTCCCATGTATCCAAGTTTTGTTAGATTGCAAAT
. : . : . : . : . : . :
rJMSF028E17+ GGCCTGTTAGAATTCTGTCAACTAGAAATGGCCCTTTTGTTGGGCTGATATTCAGGTTAG
rJMSF027M14+ GGCCTGTTAGAATTCTGTCAACTAGAAATGGCCCTTTTGTTGGGCTGATATTCAGGTTAG
rJMSF013D14+ GGCCTGTTAGAATTCTGTCAACTAGAAATGGCCCTTTTGTTGGGCTGATATTCAGGTTAG
rJMSF037P16+ GGCCTGTTAGAATTCTGTCAACTAGAAATGGCCCTTTTGTTGGGCTGATATTCAGGTTAG
____________________________________________________________
consensus GGCCTGTTAGAATTCTGTCAACTAGAAATGGCCCTTTTGTTGGGCTGATATTCAGGTTAG
. : . : . : . : . : . :
rJMSF028E17+ TTTATGAGTT
rJMSF027M14+ TTTATGAGTTTGTGGTATAGACTTATAGATGTATCAAGTTTGATTTTATTTCAAGTTTGG
rJMSF013D14+ TTTATGAGTTTGTGGTATAGACTTATAGATGTATCAAGTTTGATTTTATTTCAAGTTTGG
rJMSF037P16+ TTTATGAGTTTGTGGTATAGACTTATAGATGTATCAAGTTTGATTTTATTTCAAGTTTGG
____________________________________________________________
consensus TTTATGAGTTTGTGGTATAGACTTATAGATGTATCAAGTTTGATTTTATTTCAAGTTTGG
. : . : . : . : . : . :
rJMSF027M14+ AATATTTTCTTGTTTCACTGTTAGGTAATGTTTGGTTCAAGTTATATACGATAATTAGGA
rJMSF013D14+ AATATTTTCTTGTTTCACTGTTAGGTAATGTTTGGTTCAAGTTATATACGATAATTAGGA
rJMSF037P16+ AATATTTTCTTGTTTCACTGTTAGGTAATGTTTGGTTCAAGTTATATACGATAATTAGGA
____________________________________________________________
consensus AATATTTTCTTGTTTCACTGTTAGGTAATGTTTGGTTCAAGTTATATACGATAATTAGGA