Contig 007185:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024M16Sequence784007185 (2)ref|XP_009587164.1|7e-135PREDICTED: DNA damage-binding protein 1 [Nicotiana tomentosiformis]
JMSF037L13Sequence304000882 (3)700007185 (2)ref|XP_009587164.1|3e-116PREDICTED: DNA damage-binding protein 1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF024M16+                                                                GTGGAG
                      ____________________________________________________________
consensus                                                                   GTGGAG
 
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rJMSF024M16+          ATTTATTGTTGTAGGTGATCTGATGAAATCAATTTCTCTGTTAATATACAAGCATGAGGA
                      ____________________________________________________________
consensus             ATTTATTGTTGTAGGTGATCTGATGAAATCAATTTCTCTGTTAATATACAAGCATGAGGA
 
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rJMSF024M16+          GGGTGCTATTGAGGAGCGAGCCCGTGATTACAATGCTAATTGGATGTCAGCTGTTGAGAT
rJMSF037L13+                              CCCGTGATTACAATGCTAATTGGATGTCAGCTGTTGAGAT
                      ____________________________________________________________
consensus             GGGTGCTATTGAGGAGCGAGCCCGTGATTACAATGCTAATTGGATGTCAGCTGTTGAGAT
 
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rJMSF024M16+          TCTTGATGATGACATTTACCTTGGTGCTGAGAACAATTTCAACCTCTTCACAGTTCGGAA
rJMSF037L13+          TCTTGATGATGACATTTACCTTGGTGCTGAGAACAATTTCAACCTCTTCACAGTTCGGAA
                      ____________________________________________________________
consensus             TCTTGATGATGACATTTACCTTGGTGCTGAGAACAATTTCAACCTCTTCACAGTTCGGAA
 
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rJMSF024M16+          AAATAGCGAAGGTGCCACTGATGAGGAGCGCAGCCGTCTTGATGTGGTCGGTGAATACCA
rJMSF037L13+          AAATAGCGAAGGTGCCACTGATGAGGAGCGCAGCCGTCTTGATGTGGTCGGTGAATACCA
                      ____________________________________________________________
consensus             AAATAGCGAAGGTGCCACTGATGAGGAGCGCAGCCGTCTTGATGTGGTCGGTGAATACCA
 
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rJMSF024M16+          CCTCGGTGAGTTTGTTAATAGGTTCCAACATGGTTCTCTGGTCATGCGGCTGCCAGACTC
rJMSF037L13+          CCTCGGTGAGTTTGTTAATAGGTTCCAACATGGTTCTCTGGTCATGCGGCTGCCAGACTC
                      ____________________________________________________________
consensus             CCTCGGTGAGTTTGTTAATAGGTTCCAACATGGTTCTCTGGTCATGCGGCTGCCAGACTC
 
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rJMSF024M16+          AGATGTTGGCCAGATACCGACCATCATTTTTGGCACGGTGAATGGCGTTATCGGAGTCAT
rJMSF037L13+          AGATGTTGGCCAGATACCGACCATCATTTTTGGCACGGTGAATGGCGTTATCGGAGTCAT
                      ____________________________________________________________
consensus             AGATGTTGGCCAGATACCGACCATCATTTTTGGCACGGTGAATGGCGTTATCGGAGTCAT
 
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rJMSF024M16+          TGCCTCACTTCCACACGACCAGTACATCTTCTTGGAGAAACTGCAAACAAACTTGAGGAA
rJMSF037L13+          TGCCTCACTTCCACACGACCAGTACATCTTCTTGGAGAAACTGCAAACAAACTTGAGGAA
                      ____________________________________________________________
consensus             TGCCTCACTTCCACACGACCAGTACATCTTCTTGGAGAAACTGCAAACAAACTTGAGGAA
 
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rJMSF024M16+          AGTGATAAAGGGTGTGGGAGGGCTGAGCCACGAGCAATGGAGGTCCTTTTATAATGAAAA
rJMSF037L13+          AGTGATAAAGGGTGTGGGAGGGCTGAGCCACGAGCAATGGAGGTCCTTTTATAATGAAAA
                      ____________________________________________________________
consensus             AGTGATAAAGGGTGTGGGAGGGCTGAGCCACGAGCAATGGAGGTCCTTTTATAATGAAAA
 
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rJMSF024M16+          GAAAACCGTCGAAGCCAAGAACTTCTTGGATGGAGATTTAATCGAATCTTTCCTAGACCT
rJMSF037L13+          GAAAACCGTCGAAGCCAAGAACTTCTTGGATGGAGATTTAATCGAATCTTTCCTAGACCT
                      ____________________________________________________________
consensus             GAAAACCGTCGAAGCCAAGAACTTCTTGGATGGAGATTTAATCGAATCTTTCCTAGACCT
 
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rJMSF024M16+          TAGTCGGGTTCGGATGGAAGAGATATCGAAGGCTATGGCCGTTTCTGTGGAGGAACTCAT
rJMSF037L13+          TAGTCGGGTTCGGATGGAAGAGATATCGAAGGCTATGGCCGTTTCTGTGGAGGAACTCAT
                      ____________________________________________________________
consensus             TAGTCGGGTTCGGATGGAAGAGATATCGAAGGCTATGGCCGTTTCTGTGGAGGAACTCAT
 
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rJMSF024M16+          GAAGAGAGTAGAAGAGTTGACAAGGTTGCA                              
rJMSF037L13+          GAAGAGAGTAGAAGAGTTGACAAGGTTGCACTAATCATGCATCCTTATCTTGTAAAAGAA
                      ____________________________________________________________
consensus             GAAGAGAGTAGAAGAGTTGACAAGGTTGCACTAATCATGCATCCTTATCTTGTAAAAGAA
 
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rJMSF037L13+          CTGTCATGTTGATAAAATCTGGGATACAATTTTTTATTTTGTTTTCTGGAAGTCTGTCTA
                      ____________________________________________________________
consensus             CTGTCATGTTGATAAAATCTGGGATACAATTTTTTATTTTGTTTTCTGGAAGTCTGTCTA
 
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rJMSF037L13+          CATGTTTTAACTTTCTTCGTCTATGTATTTTTGTGATTTGGCCATGTATCTTGTCTGTAC
                      ____________________________________________________________
consensus             CATGTTTTAACTTTCTTCGTCTATGTATTTTTGTGATTTGGCCATGTATCTTGTCTGTAC