| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF013B02 | Sequence | 498 | 007810 (2) | ref|XP_006358558.1| | 2e-27 | PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog | 768 | 007184 (3) | ref|XP_009771014.1| | 1e-55 | PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog |
| JMSF037J04 | Sequence | 623 | 007810 (2) | ref|XP_006358558.1| | 3e-52 | PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog | 707 | 007184 (3) | ref|XP_009771014.1| | 5e-44 | PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog |
| JMSF040E14 | Sequence | 889 | 007184 (3) | ref|XP_004230345.1| | 1e-108 | PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF040E14+ AGAATGGTCAGGT
____________________________________________________________
consensus AGAATGGTCAGGT
. : . : . : . : . : . :
rJMSF040E14+ GCNTGGTGCAGAACCACATTCTCAAAATTGGCCAACAAAGCCCAGGGCCGCCAAATTATA
____________________________________________________________
consensus GCNTGGTGCAGAACCACATTCTCAAAATTGGCCAACAAAGCCCAGGGCCGCCAAATTATA
. : . : . : . : . : . :
rJMSF040E14+ ATCTGTTTGATTCTGAGGATACTTGGTATGACAGTCCACCAGAGGAGTTTAATTTATCTT
____________________________________________________________
consensus ATCTGTTTGATTCTGAGGATACTTGGTATGACAGTCCACCAGAGGAGTTTAATTTATCTT
. : . : . : . : . : . :
rJMSF040E14+ TGTCACCCTTCTCAACAATGTTTATGGCACTATTTGCATGGATCTCATCATCATCCTTGG
____________________________________________________________
consensus TGTCACCCTTCTCAACAATGTTTATGGCACTATTTGCATGGATCTCATCATCATCCTTGG
. : . : . : . : . : . :
rJMSF040E14+ CCTTTATATATGGGCGTGATGAAAGTGCCCATGAAGAATATTCATTTATAAATGGGAGGG
____________________________________________________________
consensus CCTTTATATATGGGCGTGATGAAAGTGCCCATGAAGAATATTCATTTATAAATGGGAGGG
. : . : . : . : . : . :
rJMSF040E14+ AATATCCAAGACAGATTGTACTAACAGATGGTCTCTCGGCTGNGATTAAACAAACTCTTG
____________________________________________________________
consensus AATATCCAAGACAGATTGTACTAACAGATGGTCTCTCGGCTGNGATTAAACAAACTCTTG
. : . : . : . : . : . :
rJMSF040E14+ CTGGTTGTCTATCTCGGGCCTNGCCGGTATTGGNTGCTGATCTTAGGCTGCCAGTACCAA
rJMSF013B02+ TCTCGGGCCTTGCCNGTATTGGTTGCTGATCTTAGGCTGCCAGTACCAA
____________________________________________________________
consensus CTGGTTGTCTATCTCGGGCCTTGCCGGTATTGGTTGCTGATCTTAGGCTGCCAGTACCAA
. : . : . : . : . : . :
rJMSF040E14+ TATCAACTTTGGAAAAGGGAATGGCTAGTTTGATNGACACAATGTCTTTTGTGGACCCGC
rJMSF013B02+ TATCAACTTTGGAAAAGGGAATGGCTAGTTTGATTGACACAATGTCTTTTGTGGACCCGC
rJMSF037J04+ AAAGGGAATGGCTAGTTTGATTGACACAATGTCTTTTGTGGACCCGC
____________________________________________________________
consensus TATCAACTTTGGAAAAGGGAATGGCTAGTTTGATTGACACAATGTCTTTTGTGGACCCGC
. : . : . : . : . : . :
rJMSF040E14+ TCCCCTCATTCAGAATGAAGCAGTGGCAGTTGATTGTTCTTCTTTTTCTTGATGCGCTCT
rJMSF013B02+ TCCCCTCATTCAGAATGAAGCAGTGGCAGTTGATTGTTCTTCTTTTTCTTGATGCGCTCT
rJMSF037J04+ TCCCCTCATTCAGAATGAAGCAGTGGCAGTTGATTGTTCTTCTTTTTCTTGATGCGCTCT
____________________________________________________________
consensus TCCCCTCATTCAGAATGAAGCAGTGGCAGTTGATTGTTCTTCTTTTTCTTGATGCGCTCT
. : . : . : . : . : . :
rJMSF040E14+ CTATATGTAGGATTCCTTNGCTGACCCCATATATGACAGGAAGGAGAATTCTGCTTCCAA
rJMSF013B02+ CTATATGTAGGATTCCTTTGCTGACCCCATATATGACAGGAAGGAGAATTCTGCTTCCAA
rJMSF037J04+ CTATATGTAGGATTCCTTTGCTGACCCCATATATGACAGGAAGGAGAATTCTGCTTCCAA
____________________________________________________________
consensus CTATATGTAGGATTCCTTTGCTGACCCCATATATGACAGGAAGGAGAATTCTGCTTCCAA
. : . : . : . : . : . :
rJMSF040E14+ AGGTTCTAGATGGCGCACAAATAAGTGCTGAAGAGTACGAGATTATGAAGGATCTCATAA
rJMSF013B02+ AGGTTCTAGATGGCGCACAAATAAGTGCTGAAGAGTACGAGATTATGAAGGATCTCATAA
rJMSF037J04+ AGGTTCTAGATGGCGCACAAATAAGTGCTGAAGAGTACGAGATTATGAAGGATCTCATAA
____________________________________________________________
consensus AGGTTCTAGATGGCGCACAAATAAGTGCTGAAGAGTACGAGATTATGAAGGATCTCATAA
. : . : . : . : . : . :
rJMSF040E14+ TTCCGTTAGGCCGAGTACCTGAGTTCACAATGCAAAGTGGAGCATAATGCACGGGGGAGT
rJMSF013B02+ TTCCGTTAGGCCGAGTACCTGAGTTCACAATGCAAAGTGGAGCATAATGCACGGGGGAGT
rJMSF037J04+ TTCCGTTAGGCCGAGTACCTGAGTTCACAATGCAAAGTGGAGCATAATGCACGGGGGAGT
____________________________________________________________
consensus TTCCGTTAGGCCGAGTACCTGAGTTCACAATGCAAAGTGGAGCATAATGCACGGGGGAGT
. : . : . : . : . : . :
rJMSF040E14+ ACATCACTCCACTAGGCTGAGTCGCTATCTTGATGTGGTTTAGTGATTATTTTTGCCACG
rJMSF013B02+ ACATCACTCCACTAGGCTGAGTCGCTATCTTGATGTGGTTTAGTGATTATTTTTGCCACG
rJMSF037J04+ ACATCACTCCACTAGGCTGAGTCGCTATCTTGATGTGGTTTAGTGATTATTTTTGCCACG
____________________________________________________________
consensus ACATCACTCCACTAGGCTGAGTCGCTATCTTGATGTGGTTTAGTGATTATTTTTGCCACG
. : . : . : . : . : . :
rJMSF040E14+ AAATTCCAAGAGAATAATGTTGAACATGTCTGTTGGAGTTTGATTCAAAGCTGCTCTTCT
rJMSF013B02+ AAATTCCAAGAGAATAATGTTGAACATGTCTGTTGGAGTTTGATTCAAAGCTGCTCTTCT
rJMSF037J04+ AAATTCCAAGAGAATAATGTTGAACATGTCTGTTGGAGTTTGATTCAAAGCTGCTCTTCT
____________________________________________________________
consensus AAATTCCAAGAGAATAATGTTGAACATGTCTGTTGGAGTTTGATTCAAAGCTGCTCTTCT
. : . : . : . : . : . :
rJMSF040E14+ GCTATGTAGCATATTTTTTTGTCTGTGAATCTGCTGTTGGGATGATGGAGAATTGTGTAA
rJMSF013B02+ GCTATGTAGCATATTTTTTTGTCTGTGAATCTGCTGTTGGGATGATGGAGAATTGTGTAA
rJMSF037J04+ GCTATGTAGCATATTTTTTTGTCTGTGAATCTGCTGTTGGGATGATGGAGAATTGTGTAA
____________________________________________________________
consensus GCTATGTAGCATATTTTTTTGTCTGTGAATCTGCTGTTGGGATGATGGAGAATTGTGTAA
. : . : . : . : . : . :
rJMSF040E14+ TGGCATGATGTTTAGTGAGATGATGTGTAAAATCAT
rJMSF013B02+ TGGCATGATGTTTAGTGAGATGATGTGTAAAATCATTCTGTGCTTTGAAAATGAACAAAG
rJMSF037J04+ TGGCATGATGTTTAGTGAGATGATGTGTAAAATCATTCTGTGCTTTGAAAATGAACAAAG
____________________________________________________________
consensus TGGCATGATGTTTAGTGAGATGATGTGTAAAATCATTCTGTGCTTTGAAAATGAACAAAG
. : . : . : . : . : . :
rJMSF013B02+ GTTTGTCTGGTTTGGCATTATTTGTTAGGTTGTTATGTTTGAGAGCAGAGCTACATTAAG
rJMSF037J04+ GTTTGTCTGGTTTGGCATTATTTGTTAGGTTGTTATGTTTGAGAGCAGAGCTACATTAAG
____________________________________________________________
consensus GTTTGTCTGGTTTGGCATTATTTGTTAGGTTGTTATGTTTGAGAGCAGAGCTACATTAAG
. : . : . : . : . : . :
rJMSF013B02+ AGCAATTAAGCGAGGATGAACCATCACTGTTCACTTTCTCTATATATATTTGGGAGGGTT
rJMSF037J04+ AGCAATTAAGCGAGGATGAACCATCACTGTTCACTTTCTCTATATATATTTGGGAGGGTT
____________________________________________________________
consensus AGCAATTAAGCGAGGATGAACCATCACTGTTCACTTTCTCTATATATATTTGGGAGGGTT
. : . : . : . : . : . :
rJMSF013B02+ CAGATGAGATTGTGAGAACATTTCCCGAAAAGTGTTGACATGTCCATATGACCATACCC
rJMSF037J04+ CAGATGAGATTGTGAGAACATTTCCCGAAAAGTGTTGACATGTCCATATGACCATACCCT
____________________________________________________________
consensus CAGATGAGATTGTGAGAACATTTCCCGAAAAGTGTTGACATGTCCATATGACCATACCCT