Contig 007180:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004D13Sequence349005212 (4)390007180 (5)ref|XP_010649126.1|4e-19PREDICTED: transmembrane protein 53 [Vitis vinifera]
JMSF004D15Sequence323007180 (5)ref|XP_010649126.1|5e-22PREDICTED: transmembrane protein 53 [Vitis vinifera]
JMSF013J14Sequence552005212 (4)ref|XP_004232422.1|4e-26PREDICTED: transmembrane protein 53 [Solanum lycopersicum]761007180 (5)ref|XP_011099637.1|4e-71PREDICTED: transmembrane protein 53 [Sesamum indicum]
JMSF035P23Sequence648005212 (4)ref|XP_004232422.1|1e-41PREDICTED: transmembrane protein 53 [Solanum lycopersicum]526007180 (5)ref|XP_011099637.1|3e-37PREDICTED: transmembrane protein 53 [Sesamum indicum]
JMSF036P23Sequence648005212 (4)ref|XP_004232422.1|1e-41PREDICTED: transmembrane protein 53 [Solanum lycopersicum]522007180 (5)ref|XP_011099637.1|1e-36PREDICTED: transmembrane protein 53 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF013J14+                           CGAAAGGATCTATTGGACAAAATCAAGGGATGTGTTGTTGATT
                      ____________________________________________________________
consensus                              CGAAAGGATCTATTGGACAAAATCAAGGGATGTGTTGTTGATT
 
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rJMSF013J14+          CAGGAGCAGACCCACACATAGACCCCAAGGTGTGGGCAGCAGGCTTCACTGTGGCACTGC
                      ____________________________________________________________
consensus             CAGGAGCAGACCCACACATAGACCCCAAGGTGTGGGCAGCAGGCTTCACTGTGGCACTGC
 
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rJMSF013J14+          TGAAGAAGCGTAGCTCTTTAGTAGATCCTGGAGAAGGGAATGAATTGGATTCTCGTTCCT
                      ____________________________________________________________
consensus             TGAAGAAGCGTAGCTCTTTAGTAGATCCTGGAGAAGGGAATGAATTGGATTCTCGTTCCT
 
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rJMSF013J14+          CAAAAATACAAGAAAAGAAGTCTTCGTTCGTTGAAACCTTGCTTTTAGATGGATTTGAAA
                      ____________________________________________________________
consensus             CAAAAATACAAGAAAAGAAGTCTTCGTTCGTTGAAACCTTGCTTTTAGATGGATTTGAAA
 
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rJMSF013J14+          AACTTTTCTCTATTCTTCTGAACTTGCCAAATGAAAATCGGAGGTTGGTGAAGATCATTT
rJMSF035P23+                            TGAACTTGCCAAATGAAAATCGGAGGTTGGTGAAGATCATTT
rJMSF036P23+                            TGAACTTGCCAAATGAAAATCGGAGGTTGGTGAAGATCATTT
                      ____________________________________________________________
consensus             AACTTTTCTCTATTCTTCTGAACTTGCCAAATGAAAATCGGAGGTTGGTGAAGATCATTT
 
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rJMSF004D13+                                                     TTATAGTACATCAGACA
rJMSF004D15+                                            ACTTNATCTTTATAGTACATCAGACA
rJMSF013J14+          CTGCTCTCATGAATGACCAGCCACCTTGTCCTCAACTTTATCTTTATAGTACATCAGACA
rJMSF035P23+          CTGCTCTCATGAATGACCAGCCACCTTGTCCTCAACTTTATCTTTATAGTACATCAGACA
rJMSF036P23+          CTGCTCTCATGAATGACCAGCCACCTTGTCCTCAACTTTATCTTTATAGTACATCAGACA
                      ____________________________________________________________
consensus             CTGCTCTCATGAATGACCAGCCACCTTGTCCTCAACTTTATCTTTATAGTACATCAGACA
 
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rJMSF004D13+          TGGTCATTCCTTATCAGTCCANTGAATTGTTCATCAAAGAGCAGTCAGTGAGAGGGAGAA
rJMSF004D15+          TGGTCATTCCTTATCAGTCCATTGAATTGTTCATCAAAGAGCAGTCAGTGAGAGGGAGAA
rJMSF013J14+          TGGTCATTCCTTATCAGTCCATTGAATTGTTCATCAAAGAGCAGTCAGTGAGAGGGAGAA
rJMSF035P23+          TGGTCATTCCTTATCAGTCCATTGAATTGTTCATCAAAGAGCAGTCAGTGAGAGGGAGAA
rJMSF036P23+          TGGTCATTCCTTATCAGTCCATTGAATTGTTCATCAAAGAGCAGTCAGTGAGAGGGAGAA
                      ____________________________________________________________
consensus             TGGTCATTCCTTATCAGTCCATTGAATTGTTCATCAAAGAGCAGTCAGTGAGAGGGAGAA
 
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rJMSF004D13+          AAGTGTCATCATTCAACTTTGGTACATCTCCTCGTGTAGACCANTACAGAACTTTCCCCT
rJMSF004D15+          AAGTGTCATCATTCAACTTTGGTACATCTCCTCGTGTAGACCACTACAGAACTTTCCCCT
rJMSF013J14+          AAGTGTCATCATTCAACTTTGGTACATCTCCTCATGTAGACCACTACAGAACTTTCCCCT
rJMSF035P23+          AAGTGTCATCATTCAACTTTGGTACATCTCCTCATGTAGACCACTACAGAACTTTCCCCT
rJMSF036P23+          AAGTGTCATCATTCAACTTTGGTACATCTCCTCATGTAGACCACTACAGAACTTTCCCCT
                      ____________________________________________________________
consensus             AAGTGTCATCATTCAACTTTGGTACATCTCCTCATGTAGACCACTACAGAACTTTCCCCT
 
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rJMSF004D13+          CCACNTATGCGTCACTGCTGCAGAACTTTCTCGAGGAATGTTTGGTCATGGTTAAGAAAC
rJMSF004D15+          CCACCTATGCGTCACTGCTGCAGAACTTTCTCGAGGAATGTTTGGTCATGGTTAAGAAAC
rJMSF013J14+          CCACCTATGCGTCACTGCTGCAGAACTTTCTCGAGGAATGTTTGGTCATGGTTAAGAAAC
rJMSF035P23+          CCACCTATGCGTCACTGCTGCAGAACTTTCTCGAGGAATGTTTGGTCATGGTTAAGAAAC
rJMSF036P23+          CCACCTATGCGTCACTGCTGCAGAACTTTCTCGAGGAATGTTTGGTCATGGTTAAGAAAC
                      ____________________________________________________________
consensus             CCACCTATGCGTCACTGCTGCAGAACTTTCTCGAGGAATGTTTGGTCATGGTTAAGAAAC
 
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rJMSF004D13+          CATAAGGATCAGTTAACCGATGACAAGTTAAATGATCATAGAAGTTACAATTGTCGAGTT
rJMSF004D15+          CATAAGGATCAGTTNACCGCTGACAAGTTAAATGATCATAGAAGTTNCAATTGTCGAGTT
rJMSF013J14+          CATAAGGATCAGTTAACCGATGACAAGTTAAATGATCATAGAAGTTACAATTGTCGAGTT
rJMSF035P23+          CATAAGGATCAGTTAACCGATGACAAGTTAAATGATCATAGAAGTTACAATTGTCGAGTT
rJMSF036P23+          CATAAGGATCAGTTAACCGATGACAAGTTAAATGATCATAGAAGTTACAATTGTCGAGTT
                      ____________________________________________________________
consensus             CATAAGGATCAGTTAACCGATGACAAGTTAAATGATCATAGAAGTTACAATTGTCGAGTT
 
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rJMSF004D13+          CCTATACTTAGCTGTGAATTAAAGTGACCATCGGAATGTCTGTTATCATTCATCTTGTTG
rJMSF004D15+          CCT                                                         
rJMSF013J14+          CCTATACTTAGCTGTGAATTAAAGTGACCATTGGAATGTCTGTTATCATTCATCTTGTTG
rJMSF035P23+          CCTATACTTAGCTGTGAATTAAAGTGACCATTGGAATGTCTGTTATCATTCATCTTGTTG
rJMSF036P23+          CCTATACTTAGCTGTGAATTAAAGTGACCATTGGAATGTCTGTTATCATTCATCTTGTTG
                      ____________________________________________________________
consensus             CCTATACTTAGCTGTGAATTAAAGTGACCATTGGAATGTCTGTTATCATTCATCTTGTTG
 
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rJMSF004D13+          TGACTGGTAATGAAGCTGTTTAATTCTCATTCGGCTGCCCCTTTGTGAGCAGAGATGGGT
rJMSF013J14+          TGACTGGTAATGAAGCTGTTTAATTCTCATTCGGCTGCCCCTTTGTGAGCAGAGATGGGT
rJMSF035P23+          TGACTGGTAATGAAGCTGTTTAATTCTCATTCGGCTGCCCCTTTGTGAGCAGAGATGGGT
rJMSF036P23+          TGACTGGTAATGAAGCTGTTTAATTCTCATTCGGCTGCCCCTTTGTGAGCAGAGATGGGT
                      ____________________________________________________________
consensus             TGACTGGTAATGAAGCTGTTTAATTCTCATTCGGCTGCCCCTTTGTGAGCAGAGATGGGT
 
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rJMSF004D13+          GGAA                                                        
rJMSF013J14+          GGAACTATGAAACTCGAACTGTCCTTAAAGAAGACTCTGT                    
rJMSF035P23+          GGAACTATGAAACTCGAACTGTCCTTAAAGAAGACTCTGT                    
rJMSF036P23+          GGAACTATGAAACTCGAACTGTCCTTAAAGAAGACTCTGTGGAATAAATGAATCATCCAT
                      ____________________________________________________________
consensus             GGAACTATGAAACTCGAACTGTCCTTAAAGAAGACTCTGTGGAATAAATGAATCATCCAT