Contig 007173:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035G10Sequence678007173 (6)ref|XP_004250099.1|5e-63PREDICTED: protein TIC 20-II, chloroplastic [Solanum lycopersicum]676007173 (6)ref|XP_004250099.1|9e-65PREDICTED: protein TIC 20-II, chloroplastic [Solanum lycopersicum]
JMSF040M20Sequence644007173 (6)ref|XP_004250099.1|7e-57PREDICTED: protein TIC 20-II, chloroplastic [Solanum lycopersicum]756007173 (6)ref|XP_004250099.1|2e-64PREDICTED: protein TIC 20-II, chloroplastic [Solanum lycopersicum]
JMSF046I14Sequence730007173 (6)ref|XP_004250099.1|5e-63PREDICTED: protein TIC 20-II, chloroplastic [Solanum lycopersicum]625007173 (6)ref|XP_004250099.1|7e-65PREDICTED: protein TIC 20-II, chloroplastic [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF040M20+                                               ANAAAGANGNGNAANNANAANGG
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consensus                                                  ANAAAGANGNGNAANNANAANGG
 
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rJMSF040M20+          TNNTAAGGNANNGAGTNGAGGTNGAGGGNNAAATNGGNNATNANGGGNCAAAANCNTNTT
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consensus             TNNTAAGGNANNGAGTNGAGGTNGAGGGNNAAATNGGNNATNANGGGNCAAAANCNTNTT
 
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rJMSF040M20+          NGCAANGGNTTNNANCATTNNGNTNNGCNTNTNTNNTNNGNNGAACAGANCANCANNGAN
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consensus             NGCAANGGNTTNNANCATTNNGNTNNGCNTNTNTNNTNNGNNGAACAGANCANCANNGAN
 
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rJMSF040M20+          CANCANCAAAGNCACNTCNGGNGACCGNCATTCNTATCACCACCGCCGCNTCCTCCTCCC
JMSF040M20-                                 GACCGCCATTCCTATCACCACCGCCGCCTCCTCCTCCC
JMSF035G10-                                 GACCGCCATTCCTATCACCACCGCCGCCTCCTCCTCCC
rJMSF046I14+                             GGCGACCGCCATTCNTATCACCACCGCCGCNTCCTCCTCCC
JMSF046I14-                                 GACCGCCATTCCTATCACCACCGCCGCCTCCTCCTCCC
rJMSF035G10+                                                               TCCTCCC
                      ____________________________________________________________
consensus             CANCANCAAAGNCACNTCNGGCGACCGCCATTCCTATCACCACCGCCGCCTCCTCCTCCC
 
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rJMSF040M20+          CCATCCTCTCAAACCCATCTTACCAAAACTCTCCCAAATCCGATCCCCACCCAAGCCCAC
JMSF040M20-           CCATCCTCTCAAACCCATCTTACCAAAACTCTCCCAAATCCGATCCCCACCCAAGCCCAC
JMSF035G10-           CCATCCTCTCAAACCCATCTTACCAAAACTCTCCCAAATCCGATCCCCACCCAAGCCCAC
rJMSF046I14+          CCATCCTCTCAAACCCATCTTACCAAAACTCTCCCAAATCCGATCCCCACCCAAGCCCAC
JMSF046I14-           CCATCCTCTCAAACCCATCTTACCAAAACTCTCCCAAATCCGATCCCCACCCAAGCCCAC
rJMSF035G10+          CCATCCTCTCAAACCCATCTTACCAAAACTCTCCCAAATCCGATCCCCACCCAAGCCCAC
                      ____________________________________________________________
consensus             CCATCCTCTCAAACCCATCTTACCAAAACTCTCCCAAATCCGATCCCCACCCAAGCCCAC
 
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rJMSF040M20+          CACGACGGCCCCCATCACCGCCTCCTACAGCACAACGCCGGCGACAGACCGCCTAATCTC
JMSF040M20-           CACGACGGCCCCCATCACCGCCTCCTACAGCACAACGCCGGCGACAGACCGCCTAATCTC
JMSF035G10-           CACGACGGCCCCCATCACCGCCTCCTACAGCACAACGCCGGCGACAGACCGCCTAATCTC
rJMSF046I14+          CACGACGGCCCCCATCACCGCCTCCTACAGCACAACGCCGGCGACAGACCGCCTAATCTC
JMSF046I14-           CACGACGGCCCCCATCACCGCCTCCTACAGCACAACGCCGGCGACAGACCGCCTAATCTC
rJMSF035G10+          CACGACGGCCCCCATCACCGCCTCCTACAGCACAACGCCGGCGACAGACCGCCTAATCTC
                      ____________________________________________________________
consensus             CACGACGGCCCCCATCACCGCCTCCTACAGCACAACGCCGGCGACAGACCGCCTAATCTC
 
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rJMSF040M20+          CGCCGTGGCCTACTTCCTCCCCTTCTTCAACGGCCTCCAATACGGGCGATTCCTGTTCGC
JMSF040M20-           CGCCGTGGCCTACTTCCTCCCCTTCTTCAACGGCCTCCAATACGGGCGATTCCTGTTCGC
JMSF035G10-           CGCCGTGGCCTACTTCCTCCCCTTCTTCAACGGCCTCCAATACGGGCGATTCCTGTTCGC
rJMSF046I14+          CGCCGTGGCCTACTTCCTCCCCTTCTTCAACGGCCTCCAATACGGGCGATTCCTGTTCGC
JMSF046I14-           CGCCGTGGNCTACTTCCTCCCCTTCTTCAACGGCCTCCAATACGGGCGATTCCTGTTCGC
rJMSF035G10+          CGCCGTGGCCTACTTCCTCCCCTTCTTCAACGGCCTCCAATACGGGCGATTCCTGTTCGC
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consensus             CGCCGTGGCCTACTTCCTCCCCTTCTTCAACGGCCTCCAATACGGGCGATTCCTGTTCGC
 
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rJMSF040M20+          CCAATTCCCAGCGCTGGCCATCCCATTGGAGCCCATCCTCCCACTCCTCTCCCTCTACCG
JMSF040M20-           CCAATTCCCAGCGCTGGCCATCCCATTGGAGCCCATCCTCCCACTCCTCTCCCTCTACCG
JMSF035G10-           CCAATTCCCAGCGCTGGCCATCCCATTGGAGCCCATCCTCCCACTCCTCTCCCTCTACCG
rJMSF046I14+          CCAATTCCCAGCGCTGGCCATCCCATTGGAGCCCATCCTCCCACTCCTCTCCCTCTACCG
JMSF046I14-           CCAATTCCCAGCGCTGGCCATCCCATTGGAGCCCATCCTCCCACTCCTCTCCCTCTACCG
rJMSF035G10+          CCAATTCCCAGCGCTGGCCATCCCATTGGAGCCCATCCTCCCACTCCTCTCCCTCTACCG
                      ____________________________________________________________
consensus             CCAATTCCCAGCGCTGGCCATCCCATTGGAGCCCATCCTCCCACTCCTCTCCCTCTACCG
 
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rJMSF040M20+          CTCCATCCCTTTCGCGAGCTTCGTCACCTTCTTCGCCCTCTACTTGGGCATCGTCCGCAA
JMSF040M20-           CTCCATCCCTTTCGCGAGCTTCGTCACCTTCTTCGCCCTCTACTTGGGCATCGTCCGCAA
JMSF035G10-           CTCCATCCCTTTCGCGAGCTTCGTCACCTTCTTCGCCCTCTACTTGGGCATCGTCCGCAA
rJMSF046I14+          CTCCATCCCTTTCGCGAGCTTCGTCACCTTCTTCGCCCTCTACTTGGGCATCGTCCGCAA
JMSF046I14-           CTCCATCCCTTTCGCGAGCTTCGTCACCTTCTTCGCCCTCTACTTGGGCATCGTCCGCAA
rJMSF035G10+          CTCCATCCCTTTCGCGAGCTTCGTCACCTTCTTCGCCCTCTACTTGGGCATCGTCCGCAA
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consensus             CTCCATCCCTTTCGCGAGCTTCGTCACCTTCTTCGCCCTCTACTTGGGCATCGTCCGCAA
 
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rJMSF040M20+          CCAGAGCCTGAGCCATTACGCCCGCTTCAACGCCCTCCAGGCTTTGGTCCTCGATATCCT
JMSF040M20-           CCAGAGCCTGAGCCATTACGCCCGCTTCAACGCCCTCCAGGCTTTGGTCCTCGATATCCT
JMSF035G10-           CCAGAGCCTGAGCCATTACGCCCGCTTCAACGCCCTCCAGGCTTTGGTCCTCGATATCCT
rJMSF046I14+          CCAGAGCCTGAGCCATTACGCCCGCTTCAACGCCCTCCAGGCTTTGGTCCTCGATATCCT
JMSF046I14-           CCAGAGCCTGAGCCATTACGCCCGCTTCAACGCCCTCCAGGCTTTGGTCCTCGATATCCT
rJMSF035G10+          CCAGAGCCTGAGCCATTACGCCCGCTTCAACGCCCTCCAGGCTTTGGTCCTCGATATCCT
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consensus             CCAGAGCCTGAGCCATTACGCCCGCTTCAACGCCCTCCAGGCTTTGGTCCTCGATATCCT
 
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rJMSF040M20+          CTTGGTGGTGCCGCTCTTGCTGCAGCGGATCCTCTCTCCGGGCCAGAGTGGTATTGGGCT
JMSF040M20-           CTTGGTGGTGCCGCTCTTGCTGCAGCGGATCCTCTCTCCGGGCCAGAGTGGTATTGGGCT
JMSF035G10-           CTTGGTGGTGCCGCTCTTGCTGCAGCGGATCCTCTCTCCGGGCCAGAGTGGTATTGGGCT
rJMSF046I14+          CTTGGTGGTGCCGCTCTTGCTGCAGCGGATCCTCTCTCCGGGCCAGAGTGGTATTGGGCT
JMSF046I14-           CTTGGTGGTGCCGCTCTTGCTGCAGCGGATCCTCTCTCCGGGCCAGAGTGGTATTGGGCT
rJMSF035G10+          CTTGGTGGTGCCGCTCTTGCTGCAGCGGATCCTCTCTCCGGGCCAGAGTGGTATTGGGCT
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consensus             CTTGGTGGTGCCGCTCTTGCTGCAGCGGATCCTCTCTCCGGGCCAGAGTGGTATTGGGCT
 
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rJMSF040M20+          CAAGCTAACGATTTGGCTCTATAATGGGCTTTTTCTTTTCGTAGTGGGCTGCTTTCTTTA
JMSF040M20-           CAAGCTAACGATTTGGCTCTATAATGGGCTTTTTCTTTTCGTAGTGGGCTGCTTTCTTTA
JMSF035G10-           CAAGCTAACGATTTGGCTCTATAATGGGCTTTTTCTTTTCGTAGTGGGCTGCTTTCTTTA
rJMSF046I14+          CAAGCTAACGATTTGGCTCTATAATGGGCTTTTTCTTTTCGTAGTGGGCTGCTTTCTTTA
JMSF046I14-           CAAGCTAACGATTTGGCTCTATAATGGGCTTTTTCTTTTCGTAGTGGGCTGCTTTCTTTA
rJMSF035G10+          CAAGCTAACGATTTGGCTCTATAATGGGCTTTTTCTTTTCGTAGTGGGCTGCTTTCTTTA
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consensus             CAAGCTAACGATTTGGCTCTATAATGGGCTTTTTCTTTTCGTAGTGGGCTGCTTTCTTTA
 
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rJMSF040M20+          TGGGCTTGTTTCTAGTATCATTGGCAAAACCCCTTACTTCCCCCTCGTCACTGACGCTGC
JMSF040M20-           TGGGCTTGTTTCTAGTATCATTGGCAAA                                
JMSF035G10-           TGGGCTTGTTTCTAGTATCATTGGCAAAACCCCTTACTTCCCCCTCGTCACTGACGCTGC
rJMSF046I14+          TGGGCTTGTTTCTAGTATCATTGGCAAAACCCCTTACTTCCCCCTCGTCACTGACGCTGC
JMSF046I14-           TGGGCTTGTTTCTAGTATCATTGGCAAAACCCCTTACTTCCCCCTCGTCNCTGACGCTGC
rJMSF035G10+          TGGGCTTGTTTCTAGTATCATTGGCAAAACCCCTTACTTCCCCCTCGTCACTGACGCTGC
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consensus             TGGGCTTGTTTCTAGTATCATTGGCAAAACCCCTTACTTCCCCCTCGTCACTGACGCTGC
 
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rJMSF040M20+          CAAGAACCAAATG                                               
JMSF035G10-           C                                                           
rJMSF046I14+          CAAGAACCAAATGTAGTTGTAGTAGTAATAATATGATATTT                   
JMSF046I14-           CAAGAACCAAATGTAGTTGTAGTAGTAATAATATGATATTTTGTTTTCTTATGT      
rJMSF035G10+          CAAGAACCAAATGTAGTTGTAGTAGTAATAATATGATATTTTGTTTTCTTATGTAATGAA
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consensus             CAAGAACCAAATGTAGTTGTAGTAGTAATAATATGATATTTTGTTTTCTTATGTAATGAA