Contig 007172:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014P09Sequence362007967 (9)ref|XP_009593555.1|1e-13PREDICTED: receptor-like protein kinase HSL1 isoform X1 [Nicotiana tomentosifor775007172 (2)ref|XP_009593556.1|6e-101PREDICTED: receptor-like protein kinase HSL1 isoform X2 [Nicotiana tomentosifor
JMSF035C12Sequence677007967 (9)ref|XP_009593555.1|7e-29PREDICTED: receptor-like protein kinase HSL1 isoform X1 [Nicotiana tomentosifor725007172 (2)ref|XP_009593556.1|1e-90PREDICTED: receptor-like protein kinase HSL1 isoform X2 [Nicotiana tomentosifor

Alignment

This contig is upended


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rJMSF014P09+             TTTGCTGCACAGCTGCAAAGGCGGCTCGCTCGACTGGCCTGCCCGGTTCAAGATCGC
rJMSF035C12+                                                                 ATCGC
                      ____________________________________________________________
consensus                TTTGCTGCACAGCTGCAAAGGCGGCTCGCTCGACTGGCCTGCCCGGTTCAAGATCGC
 
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rJMSF014P09+          TTGTGATGCAGCCGAGGGCCTCTCCTATCTGCACCATGACTGCGTGCCGCCTATTGTCCA
rJMSF035C12+          TTGTGATGCAGCCGAGGGCCTCTCCTATCTGCACCATGACTGCGTGCCGCCTATTGTCCA
                      ____________________________________________________________
consensus             TTGTGATGCAGCCGAGGGCCTCTCCTATCTGCACCATGACTGCGTGCCGCCTATTGTCCA
 
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rJMSF014P09+          CCGGGATGTCAAGTCCAACAACATTCTGTTGAATGAGCATTTCGGTGCGAAAATCTCGGA
rJMSF035C12+          CCGGGATGTCAAGTCCAACAACATTCTGTTGAATGAGCATTTCGGTGCGAAAATCTCGGA
                      ____________________________________________________________
consensus             CCGGGATGTCAAGTCCAACAACATTCTGTTGAATGAGCATTTCGGTGCGAAAATCTCGGA
 
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rJMSF014P09+          TTTTGGAGTGGCAAAGGTTGTCCAAAGAACCAACAAAGGTTATGCCGAGTCCATGTCTGT
rJMSF035C12+          TTTTGGAGTGGCAAAGGTTGTCCAAAGAACCAACAAAGGTTATGCCGAGTCCATGTCTGT
                      ____________________________________________________________
consensus             TTTTGGAGTGGCAAAGGTTGTCCAAAGAACCAACAAAGGTTATGCCGAGTCCATGTCTGT
 
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rJMSF014P09+          CATTGCCGGTTCTTATGGCTACATTGCCCCAGAATATGCATACACTTTACATGTGAACGA
rJMSF035C12+          CATTGCCGGTTCTTATGGCTACATTGCCCCAGAATATGCATACACTTTACATGTGAACGA
                      ____________________________________________________________
consensus             CATTGCCGGTTCTTATGGCTACATTGCCCCAGAATATGCATACACTTTACATGTGAACGA
 
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rJMSF014P09+          GAAGAGCGATATATACAGTTTCGGGGTGGTGATGCTGGAGCTAGTGACAGGGAGAAGGCC
rJMSF035C12+          GAAGAGCGATATATACAGTTTCGGGGTGGTGATGCTGGAGCTAGTGACAGGGAGAAGGCC
                      ____________________________________________________________
consensus             GAAGAGCGATATATACAGTTTCGGGGTGGTGATGCTGGAGCTAGTGACAGGGAGAAGGCC
 
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rJMSF014P09+          CGTGGATCCCGAGTTTGGTGAGAAAGATCTGGCAAGCTGGGCATGTTCAACAGTGGACAA
rJMSF035C12+          CGTGGATCCCGAGTTTGGTGAGAAAGATCTGGCAAGCTGGGCATGTTCAACAGTGGACAA
                      ____________________________________________________________
consensus             CGTGGATCCCGAGTTTGGTGAGAAAGATCTGGCAAGCTGGGCATGTTCAACAGTGGACAA
 
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rJMSF014P09+          GAAAGGAGTTGATGAGGTGATTGATCCCAGGTTGGATTCCAGTTTCAGGGAACATATATG
rJMSF035C12+          GAAAGGAGTTGATGAGGTGATTGATCCCAGGTTGGATTCCAGTTTCAGGGAACATATATG
                      ____________________________________________________________
consensus             GAAAGGAGTTGATGAGGTGATTGATCCCAGGTTGGATTCCAGTTTCAGGGAACATATATG
 
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rJMSF014P09+          CAAGGTTCTTGATATTGCTCTCCTCTGCATTAGCCATACTCCGGTTAACCGGCCGTCAAT
rJMSF035C12+          CAAGGTTCTTGATATTGCTCTCCTCTGCATTAGCCATACTCCGGTTAACCGGCCGTCAAT
                      ____________________________________________________________
consensus             CAAGGTTCTTGATATTGCTCTCCTCTGCATTAGCCATACTCCGGTTAACCGGCCGTCAAT
 
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rJMSF014P09+          GCGTCGTGTGGTTAAACTGCTCCAAGAATCCGATGGGAATTTCAGCCCAATGACAGGGAA
rJMSF035C12+          GCGTCGTGTGGTTAAACTGCTCCAAGAATCCGATGGGAATTTCAGCCCAATGACAGGGAA
                      ____________________________________________________________
consensus             GCGTCGTGTGGTTAAACTGCTCCAAGAATCCGATGGGAATTTCAGCCCAATGACAGGGAA
 
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rJMSF014P09+          GAAATTAGACACAAAACTCTCTGTTGAGGATCTCTCAGAAATGGCACAAGTCATCAAAGT
rJMSF035C12+          GAAATTAGACACAAAACTCTCTGTTGAGGATCTCTCAGAAATGGCACAAGTCATCAAAGT
                      ____________________________________________________________
consensus             GAAATTAGACACAAAACTCTCTGTTGAGGATCTCTCAGAAATGGCACAAGTCATCAAAGT
 
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rJMSF014P09+          GTAAAGCTTTAGGGAACAAGCTAAGCTAAGCAGTATGTAGAAGCAATCCATTCTATCTTA
rJMSF035C12+          GTAAAGCTTTAGGGAACAAGCTAAGCTAAGCAGTATGTAGAAGCAATCCATTCTATCTTA
                      ____________________________________________________________
consensus             GTAAAGCTTTAGGGAACAAGCTAAGCTAAGCAGTATGTAGAAGCAATCCATTCTATCTTA
 
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rJMSF014P09+          TTTTGGTTTTCAATGGTTAGGCAGTACCTCATGGTTTCACTC                  
rJMSF035C12+          TTTTGGTTTTCAATGGTTAGGCAGTACCTCATGGTTTCACTCATGAATGTGAGACTAAGG
                      ____________________________________________________________
consensus             TTTTGGTTTTCAATGGTTAGGCAGTACCTCATGGTTTCACTCATGAATGTGAGACTAAGG