Contig 007170:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF034O04Sequence706005194 (2)ref|XP_009617534.1|2e-05PREDICTED: protein SUPPRESSOR OF PHYA-105 1-like isoform X2 [Nicotiana tomentos696007170 (2)dbj|BAD94577.1|5e-12putative photomorphogenesis repressor protein [Arabidopsis thaliana]
JMSF037M08Sequence671005194 (2)ref|XP_009792667.1|3e-05PREDICTED: protein SUPPRESSOR OF PHYA-105 1-like isoform X2 [Nicotiana sylvestr689007170 (2)gb|KDO76457.1|1e-12hypothetical protein CISIN_1g0013662mg, partial [Citrus sinensis]

Alignment

This contig is upended


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rJMSF037M08+                             TTTGAATCTATCGATCCTATCTCTGGCGATGAGATCATTGA
rJMSF034O04+                                  ATCTATCGATCCTATCTCTGGCGATGAGATCATTGA
                      ____________________________________________________________
consensus                                TTTGAATCTATCGATCCTATCTCTGGCGATGAGATCATTGA
 
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rJMSF037M08+          TAATAACGGACCGTTTGTCTCAAGTGTTTGCTGGAGAAGGAAATCTAATATGGTTGTTGC
rJMSF034O04+          TAATAACGGACCGTTTGTTTCAAGTGTTTGCTGGAGAAGGAAATCTAATATGGTTGTTGC
                      ____________________________________________________________
consensus             TAATAACGGACCGTTTGTTTCAAGTGTTTGCTGGAGAAGGAAATCTAATATGGTTGTTGC
 
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rJMSF037M08+          TGCCAACTCAACTGGATGTATTAAGCTGTTGCGTTGGTCTAATTAAAAGCCCATTTAACT
rJMSF034O04+          TGCCAACTCAACTGGATGTATTAAGCTGTTGCGTTGGTCTAATTAAAAGCCCATTTAACT
                      ____________________________________________________________
consensus             TGCCAACTCAACTGGATGTATTAAGCTGTTGCGTTGGTCTAATTAAAAGCCCATTTAACT
 
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rJMSF037M08+          TACATTGTTTTCATCAATTGTTCCCTGGGTTTTTACTCTAGCAGAGTTGCATAAACTAAG
rJMSF034O04+          TACATTGTTTTCATCAATTGTTCCCTGGGTTTTTACTCTAGCAGAGTTGCATAAACTAAG
                      ____________________________________________________________
consensus             TACATTGTTTTCATCAATTGTTCCCTGGGTTTTTACTCTAGCAGAGTTGCATAAACTAAG
 
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rJMSF037M08+          GTTGCACAAGTTAAGCTTTCGACGATAGAGCAAAGTCTGTAGTCAGAGGATCCAGGACTT
rJMSF034O04+          GTTGCACAAGTTAAGCTTTCGACGATAGAGCAAAGTCTGTAGTCAGAGGATCCAGGACTT
                      ____________________________________________________________
consensus             GTTGCACAAGTTAAGCTTTCGACGATAGAGCAAAGTCTGTAGTCAGAGGATCCAGGACTT
 
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rJMSF037M08+          GTGCACAGACCGCTTCATTGTCGTCTCTTCTGTAAAATGCTCCTTAAGACCAGGTTGGAG
rJMSF034O04+          GTGCACAGACCGCTTCATTGTCGTCTCTTCTGTAAAATGCTCCTTAAGACCAGGTTGGAG
                      ____________________________________________________________
consensus             GTGCACAGACCGCTTCATTGTCGTCTCTTCTGTAAAATGCTCCTTAAGACCAGGTTGGAG
 
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rJMSF037M08+          TTTTTCCTAGATGTTTTTATTGTGAAGCTGGAAGAGACGTAAGTGATATGTGAAGAAATG
rJMSF034O04+          TTTTTCCTAGATGTTTTTATTGTGAAGCTGGAAGAGACGTAAGTGATATGTGAAGAAATG
                      ____________________________________________________________
consensus             TTTTTCCTAGATGTTTTTATTGTGAAGCTGGAAGAGACGTAAGTGATATGTGAAGAAATG
 
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rJMSF037M08+          CAGCCATCTGTTTTGTACTGTTTTGTTTTCGGGAATAAAGAAGGATTTACAAGTGAAAAA
rJMSF034O04+          CAGCCATCTGTTTTGTACTGTTTTGTTTTCGGGAATAAAGAAGGATTTACAAGTGAAAAA
                      ____________________________________________________________
consensus             CAGCCATCTGTTTTGTACTGTTTTGTTTTCGGGAATAAAGAAGGATTTACAAGTGAAAAA
 
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rJMSF037M08+          CGAGAGCTGCTCTCCAAGATTATTTTTGTAGTTAAGTCTATAATGCGTATTTCTGCAGAT
rJMSF034O04+          CGAGAGCTGCTCTCCAAGATTATTTTTGTAGTTAAGTCTATAATGCGTATTTCTGCAGAT
                      ____________________________________________________________
consensus             CGAGAGCTGCTCTCCAAGATTATTTTTGTAGTTAAGTCTATAATGCGTATTTCTGCAGAT
 
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rJMSF037M08+          AAAACTGAAAGTCTTTGGAGCTTTGCATTGCAAGGACTTCCATTACATGTGACCTCCAGA
rJMSF034O04+          AAAACTGAAAGTCTTTGGAGCTTTGCATTGCAAGGACTTCCATTACATGTGACCTCCAGA
                      ____________________________________________________________
consensus             AAAACTGAAAGTCTTTGGAGCTTTGCATTGCAAGGACTTCCATTACATGTGACCTCCAGA
 
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rJMSF037M08+          ACTCTTTCAATTCTACATGTCTAAAGTCTAGAGTATAAGATCAGTATTTTTGTTTACCAA
rJMSF034O04+          ACTCTTTCAATTCTACATGTCTAAAGTCTAGAGTATAAGATCAGTATTTTTGTTTACCAA
                      ____________________________________________________________
consensus             ACTCTTTCAATTCTACATGTCTAAAGTCTAGAGTATAAGATCAGTATTTTTGTTTACCAA
 
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rJMSF037M08+          ATGATGTCTGTATTCAAGATGTTCTTGCATTCTTGCACTTT                   
rJMSF034O04+          ATGATGTCTGTATTCAAGATGTTCTTGCATTCTTGCACTTTTGATCGATGAAAGCAGAAC
                      ____________________________________________________________
consensus             ATGATGTCTGTATTCAAGATGTTCTTGCATTCTTGCACTTTTGATCGATGAAAGCAGAAC