Contig 007169:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001H05Sequence458012890 (5)ref|XP_006348235.1|9e-09PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Solanum tuberosum]657007169 (5)ref|XP_010242958.1|1e-104PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Nelumbo nucifera] ref|XP_0102
JMFF025K24Sequence454012890 (5)ref|XP_004244215.1|1e-05PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum]296007169 (5)ref|XP_010241980.1|2e-46PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X4 [Nelumbo nucif
JMSF034G16Sequence457012890 (5)ref|XP_004244215.1|8e-04PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum]749007169 (5)ref|XP_010242958.1|2e-103PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Nelumbo nucifera] ref|XP_0102
JMSF035C17Sequence405012890 (5)707007169 (5)ref|XP_009804874.1|3e-76PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform X2 [Nicotiana syl
JMSF045O24Sequence487012890 (5)ref|XP_004244215.1|3e-07PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum]614007169 (5)ref|XP_009804874.1|2e-51PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform X2 [Nicotiana syl

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF035C17+ CGTGCAATCCAGTCGTTAGGAGGAA
                      ____________________________________________________________
consensus CGTGCAATCCAGTCGTTAGGAGGAA
 
. : . : . : . : . : . :
rJMSF035C17+ GGGCATTCATCTGCTCCGTGTGTCTGCTGGCGATGAGCATGTTGTAGCACTCGATTCCAA
                      ____________________________________________________________
consensus GGGCATTCATCTGCTCCGTGTGTCTGCTGGCGATGAGCATGTTGTAGCACTCGATTCCAA
 
. : . : . : . : . : . :
rJMSF035C17+ CGGATATGTAAGTCATCAAACCGTAATAAATTGAATAACGGATTCTTTGTCTGTTCCACT
                      ____________________________________________________________
consensus CGGATATGTAAGTCATCAAACCGTAATAAATTGAATAACGGATTCTTTGTCTGTTCCACT
 
. : . : . : . : . : . :
rJMSF035C17+ AACTGTTTATGGTCTTCTATCGGTTATTGCAGGTGTACACTTGGGGAAAAGGTTATTGTG
rJMFF025K24+ GTACACNTGGGGAAAAGGTTATTGNG
rJMFF001H05+ GTGTACACTTGGGGAAAAGGTTATTGTG
rJMSF034G16+ GTGTACACTTGGGGAAAAGGTTATTGTG
                      ____________________________________________________________
consensus AACTGTTTATGGTCTTCTATCGGTTATTGCAGGTGTACACTTGGGGAAAAGGTTATTGTG
 
. : . : . : . : . : . :
rJMSF035C17+ GTGCACTCGGGCACGGAGATGAGATCGATAAGACTACTCCAGAACTTGTCGACAACCTTA
rJMFF025K24+ GTGCACTCGGGCACGGAGATGAGATCGATAAGACTACTCCAGAACTTGTCGACANCCTTA
rJMFF001H05+ GTGCACTCGGGCACGGAGATGAGATCGATAAGACTACTCCAGAACTTGTCGACAACCTTA
rJMSF034G16+ GTGCACTCGGGCACGGAGATGAGATCGATAAGACTACTCCAGAACTTGTCGACAACCTTA
                      ____________________________________________________________
consensus GTGCACTCGGGCACGGAGATGAGATCGATAAGACTACTCCAGAACTTGTCGACAACCTTA
 
. : . : . : . : . : . :
rJMSF035C17+ AGAGCCACCTTGCCATTCAGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTAGTGGATG
rJMFF025K24+ AGAGCCACCTTGCCATTCAGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTNGTGGATG
rJMFF001H05+ AGAGCCACCTTGCCATTCAGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTAGTGGATG
rJMSF045O24+ AGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTAGTGGATG
rJMSF034G16+ AGAGCCACCTTGCCATTCAGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTAGTGGATG
                      ____________________________________________________________
consensus AGAGCCACCTTGCCATTCAGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTAGTGGATG
 
. : . : . : . : . : . :
rJMSF035C17+ ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTCGGGTTCCTTGACAGAG
rJMFF025K24+ ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTNGGNTTCCTNNACAGAN
rJMFF001H05+ ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTCGGGTTCCTTGACAGAG
rJMSF045O24+ ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTCGGGTTCCTTGACAGAG
rJMSF034G16+ ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTCGGGTTCCTTGACAGAG
                      ____________________________________________________________
consensus ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTCGGGTTCCTTGACAGAG
 
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rJMSF035C17+ GAGTATCCGATAAAGTTGCAAGGCCTCGGGTCCTCGACAGCCTGAGATCCCATCACATAT
rJMFF025K24+ GAGTATCCGATAAAGTTGCAAGGCCTCGGNTCCTCGA
rJMFF001H05+ GAGTATCCGATAAAGTTGCAAGGCCTCGGGTCCTCGACAGCCTGAGATCCCATCACATAT
rJMSF045O24+ GAGTATCCGATAAAGTTGCAAGGCCTCGGGTCCTCGACAGCCTGAGATCCCATCACATAT
rJMSF034G16+ GAGTATCCGATAAAGTTGCAAGGCCTCGGGTCCTCGACAGCCTGAGATCCCATCACATAT
                      ____________________________________________________________
consensus GAGTATCCGATAAAGTTGCAAGGCCTCGGGTCCTCGACAGCCTGAGATCCCATCACATAT
 
. : . : . : . : . : . :
rJMSF035C17+ CCCAGATTAGCACCGCCCTGTACCACACCATAGTAATCACGAGTCGCGGGCAAATCTTCG
rJMFF001H05+ CCCAGATTAGCACCGCCCTGTACCACACCATAGTAATCACGAGTCGCGGGCAAATCTTCG
rJMSF045O24+ CCCAGATTAGCACCGCCCTGTACCACACCATAGTAATCACGAGTCGCGGGCAAATCTTCG
rJMSF034G16+ CCCAGATTAGCACCGCCCTGTACCACACCATAGTAATCACGAGTCGCGGGCAAATCTTCG
                      ____________________________________________________________
consensus CCCAGATTAGCACCGCCCTGTACCACACCATAGTAATCACGAGTCGCGGGCAAATCTTCG
 
. : . : . : . : . : . :
rJMSF035C17+ GGTTTGGAGATAACGAAAGAGCGCAACTTGGAATAGATACGCTCCGGGGATGCCTAAATC
rJMFF001H05+ GGTTTGGAGATAACGAAAGAGCGCAACTTGGAATAGATACGCTCCGGGGATGCCTAAATC
rJMSF045O24+ GGTTTGGAGATAACGAAAGAGCGCAACTTGGAATAGATACGCTCCGGGGATGCCTAAATC
rJMSF034G16+ GGTTTGGAGATAACGAAAGAGCGCAACTTGGAATAGATACGCTCCGGGGATGCCTAAATC
                      ____________________________________________________________
consensus GGTTTGGAGATAACGAAAGAGCGCAACTTGGAATAGATACGCTCCGGGGATGCCTAAATC
 
. : . : . : . : . : . :
rJMSF035C17+ CTACAGAAATTCAGCTGCAGAAAGCATCACCAATGTAGAATACTGGTAAAAGTTTAAGTT
rJMFF001H05+ CTACAGAAATTCAGCTGCAGAAAGCATCACCAATGTAGAATACTGGTAAAAGTTTAAGTT
rJMSF045O24+ CTACAGAAATTCAGCTGCAGAAAGCATCACCAATGTAGAATACTGGTAAAAGTTTAAGTT
rJMSF034G16+ CTACAGAAATTCAGCTGCAGAAAGCATCACCAATGTAGAATACTGGTAAAAGTTTAAGTT
                      ____________________________________________________________
consensus CTACAGAAATTCAGCTGCAGAAAGCATCACCAATGTAGAATACTGGTAAAAGTTTAAGTT
 
. : . : . : . : . : . :
rJMSF035C17+ GATTTACCATTAGGAGTTTAGCCATTGTCATACCTATTTCATATCATTCCAAGAACTAAT
rJMFF001H05+ GATTTACCATTAGGAGTTTAGCCATTGTCATACCTATTTCATATCATTCCAAGAACTAAT
rJMSF045O24+ GATTTACCATTAGGAGTTTAGCCATTGTCATACCTATTTCATATCATTCCAAGAACTAAT
rJMSF034G16+ GATTTACCATTAGGAGTTTAGCCATTGTCATACCTATTTCATATCATTCCAAGAACTAAT
                      ____________________________________________________________
consensus GATTTACCATTAGGAGTTTAGCCATTGTCATACCTATTTCATATCATTCCAAGAACTAAT
 
. : . : . : . : . : . :
rJMSF035C17+ TGTGGTGCTGTAGTTCTAGGAT
rJMFF001H05+ TGTGGTGCTGTAGTTCTAGGAT
rJMSF045O24+ TGTGGTGCTGTAGTTCTAGGATCTGTTGTGAATTGTGACTGTTTATGTTCACCAAAAACA
rJMSF034G16+ TGTGGTGCTGTAGTTCTAGGATCTGTTGTGAATTGTGACTGTTTATGTTCACCAAAAACA
                      ____________________________________________________________
consensus TGTGGTGCTGTAGTTCTAGGATCTGTTGTGAATTGTGACTGTTTATGTTCACCAAAAACA
 
. : . : . : . : . : . :
rJMSF045O24+ ACTTTGTTTCCTATTTTCTTCTTGTTTTGCACTTGTACTATCTTTAC
rJMSF034G16+ ACTTTGTTTCCTATTTTCTTCTTGTTTTGCACTTGTACTATCTTTACAAATGCAAGTATG
                      ____________________________________________________________
consensus ACTTTGTTTCCTATTTTCTTCTTGTTTTGCACTTGTACTATCTTTACAAATGCAAGTATG