| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001H05 | Sequence | 458 | 012890 (5) | ref|XP_006348235.1| | 9e-09 | PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Solanum tuberosum] | 657 | 007169 (5) | ref|XP_010242958.1| | 1e-104 | PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Nelumbo nucifera] ref|XP_0102 |
| JMFF025K24 | Sequence | 454 | 012890 (5) | ref|XP_004244215.1| | 1e-05 | PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum] | 296 | 007169 (5) | ref|XP_010241980.1| | 2e-46 | PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X4 [Nelumbo nucif |
| JMSF034G16 | Sequence | 457 | 012890 (5) | ref|XP_004244215.1| | 8e-04 | PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum] | 749 | 007169 (5) | ref|XP_010242958.1| | 2e-103 | PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Nelumbo nucifera] ref|XP_0102 |
| JMSF035C17 | Sequence | 405 | 012890 (5) | 707 | 007169 (5) | ref|XP_009804874.1| | 3e-76 | PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform X2 [Nicotiana syl | |||
| JMSF045O24 | Sequence | 487 | 012890 (5) | ref|XP_004244215.1| | 3e-07 | PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum] | 614 | 007169 (5) | ref|XP_009804874.1| | 2e-51 | PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform X2 [Nicotiana syl |
This contig is upended
. : . : . : . : . : . :
rJMSF035C17+ CGTGCAATCCAGTCGTTAGGAGGAA
____________________________________________________________
consensus CGTGCAATCCAGTCGTTAGGAGGAA
. : . : . : . : . : . :
rJMSF035C17+ GGGCATTCATCTGCTCCGTGTGTCTGCTGGCGATGAGCATGTTGTAGCACTCGATTCCAA
____________________________________________________________
consensus GGGCATTCATCTGCTCCGTGTGTCTGCTGGCGATGAGCATGTTGTAGCACTCGATTCCAA
. : . : . : . : . : . :
rJMSF035C17+ CGGATATGTAAGTCATCAAACCGTAATAAATTGAATAACGGATTCTTTGTCTGTTCCACT
____________________________________________________________
consensus CGGATATGTAAGTCATCAAACCGTAATAAATTGAATAACGGATTCTTTGTCTGTTCCACT
. : . : . : . : . : . :
rJMSF035C17+ AACTGTTTATGGTCTTCTATCGGTTATTGCAGGTGTACACTTGGGGAAAAGGTTATTGTG
rJMFF025K24+ GTACACNTGGGGAAAAGGTTATTGNG
rJMFF001H05+ GTGTACACTTGGGGAAAAGGTTATTGTG
rJMSF034G16+ GTGTACACTTGGGGAAAAGGTTATTGTG
____________________________________________________________
consensus AACTGTTTATGGTCTTCTATCGGTTATTGCAGGTGTACACTTGGGGAAAAGGTTATTGTG
. : . : . : . : . : . :
rJMSF035C17+ GTGCACTCGGGCACGGAGATGAGATCGATAAGACTACTCCAGAACTTGTCGACAACCTTA
rJMFF025K24+ GTGCACTCGGGCACGGAGATGAGATCGATAAGACTACTCCAGAACTTGTCGACANCCTTA
rJMFF001H05+ GTGCACTCGGGCACGGAGATGAGATCGATAAGACTACTCCAGAACTTGTCGACAACCTTA
rJMSF034G16+ GTGCACTCGGGCACGGAGATGAGATCGATAAGACTACTCCAGAACTTGTCGACAACCTTA
____________________________________________________________
consensus GTGCACTCGGGCACGGAGATGAGATCGATAAGACTACTCCAGAACTTGTCGACAACCTTA
. : . : . : . : . : . :
rJMSF035C17+ AGAGCCACCTTGCCATTCAGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTAGTGGATG
rJMFF025K24+ AGAGCCACCTTGCCATTCAGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTNGTGGATG
rJMFF001H05+ AGAGCCACCTTGCCATTCAGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTAGTGGATG
rJMSF045O24+ AGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTAGTGGATG
rJMSF034G16+ AGAGCCACCTTGCCATTCAGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTAGTGGATG
____________________________________________________________
consensus AGAGCCACCTTGCCATTCAGGTTTGTGCCAGTAAGAGGAAAAGTTTCGTGTTAGTGGATG
. : . : . : . : . : . :
rJMSF035C17+ ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTCGGGTTCCTTGACAGAG
rJMFF025K24+ ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTNGGNTTCCTNNACAGAN
rJMFF001H05+ ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTCGGGTTCCTTGACAGAG
rJMSF045O24+ ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTCGGGTTCCTTGACAGAG
rJMSF034G16+ ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTCGGGTTCCTTGACAGAG
____________________________________________________________
consensus ATGGTTCGGTGTTTGGCTTTGGGTGGATGGGTTTTGGTAGCCTCGGGTTCCTTGACAGAG
. : . : . : . : . : . :
rJMSF035C17+ GAGTATCCGATAAAGTTGCAAGGCCTCGGGTCCTCGACAGCCTGAGATCCCATCACATAT
rJMFF025K24+ GAGTATCCGATAAAGTTGCAAGGCCTCGGNTCCTCGA
rJMFF001H05+ GAGTATCCGATAAAGTTGCAAGGCCTCGGGTCCTCGACAGCCTGAGATCCCATCACATAT
rJMSF045O24+ GAGTATCCGATAAAGTTGCAAGGCCTCGGGTCCTCGACAGCCTGAGATCCCATCACATAT
rJMSF034G16+ GAGTATCCGATAAAGTTGCAAGGCCTCGGGTCCTCGACAGCCTGAGATCCCATCACATAT
____________________________________________________________
consensus GAGTATCCGATAAAGTTGCAAGGCCTCGGGTCCTCGACAGCCTGAGATCCCATCACATAT
. : . : . : . : . : . :
rJMSF035C17+ CCCAGATTAGCACCGCCCTGTACCACACCATAGTAATCACGAGTCGCGGGCAAATCTTCG
rJMFF001H05+ CCCAGATTAGCACCGCCCTGTACCACACCATAGTAATCACGAGTCGCGGGCAAATCTTCG
rJMSF045O24+ CCCAGATTAGCACCGCCCTGTACCACACCATAGTAATCACGAGTCGCGGGCAAATCTTCG
rJMSF034G16+ CCCAGATTAGCACCGCCCTGTACCACACCATAGTAATCACGAGTCGCGGGCAAATCTTCG
____________________________________________________________
consensus CCCAGATTAGCACCGCCCTGTACCACACCATAGTAATCACGAGTCGCGGGCAAATCTTCG
. : . : . : . : . : . :
rJMSF035C17+ GGTTTGGAGATAACGAAAGAGCGCAACTTGGAATAGATACGCTCCGGGGATGCCTAAATC
rJMFF001H05+ GGTTTGGAGATAACGAAAGAGCGCAACTTGGAATAGATACGCTCCGGGGATGCCTAAATC
rJMSF045O24+ GGTTTGGAGATAACGAAAGAGCGCAACTTGGAATAGATACGCTCCGGGGATGCCTAAATC
rJMSF034G16+ GGTTTGGAGATAACGAAAGAGCGCAACTTGGAATAGATACGCTCCGGGGATGCCTAAATC
____________________________________________________________
consensus GGTTTGGAGATAACGAAAGAGCGCAACTTGGAATAGATACGCTCCGGGGATGCCTAAATC
. : . : . : . : . : . :
rJMSF035C17+ CTACAGAAATTCAGCTGCAGAAAGCATCACCAATGTAGAATACTGGTAAAAGTTTAAGTT
rJMFF001H05+ CTACAGAAATTCAGCTGCAGAAAGCATCACCAATGTAGAATACTGGTAAAAGTTTAAGTT
rJMSF045O24+ CTACAGAAATTCAGCTGCAGAAAGCATCACCAATGTAGAATACTGGTAAAAGTTTAAGTT
rJMSF034G16+ CTACAGAAATTCAGCTGCAGAAAGCATCACCAATGTAGAATACTGGTAAAAGTTTAAGTT
____________________________________________________________
consensus CTACAGAAATTCAGCTGCAGAAAGCATCACCAATGTAGAATACTGGTAAAAGTTTAAGTT
. : . : . : . : . : . :
rJMSF035C17+ GATTTACCATTAGGAGTTTAGCCATTGTCATACCTATTTCATATCATTCCAAGAACTAAT
rJMFF001H05+ GATTTACCATTAGGAGTTTAGCCATTGTCATACCTATTTCATATCATTCCAAGAACTAAT
rJMSF045O24+ GATTTACCATTAGGAGTTTAGCCATTGTCATACCTATTTCATATCATTCCAAGAACTAAT
rJMSF034G16+ GATTTACCATTAGGAGTTTAGCCATTGTCATACCTATTTCATATCATTCCAAGAACTAAT
____________________________________________________________
consensus GATTTACCATTAGGAGTTTAGCCATTGTCATACCTATTTCATATCATTCCAAGAACTAAT
. : . : . : . : . : . :
rJMSF035C17+ TGTGGTGCTGTAGTTCTAGGAT
rJMFF001H05+ TGTGGTGCTGTAGTTCTAGGAT
rJMSF045O24+ TGTGGTGCTGTAGTTCTAGGATCTGTTGTGAATTGTGACTGTTTATGTTCACCAAAAACA
rJMSF034G16+ TGTGGTGCTGTAGTTCTAGGATCTGTTGTGAATTGTGACTGTTTATGTTCACCAAAAACA
____________________________________________________________
consensus TGTGGTGCTGTAGTTCTAGGATCTGTTGTGAATTGTGACTGTTTATGTTCACCAAAAACA
. : . : . : . : . : . :
rJMSF045O24+ ACTTTGTTTCCTATTTTCTTCTTGTTTTGCACTTGTACTATCTTTAC
rJMSF034G16+ ACTTTGTTTCCTATTTTCTTCTTGTTTTGCACTTGTACTATCTTTACAAATGCAAGTATG
____________________________________________________________
consensus ACTTTGTTTCCTATTTTCTTCTTGTTTTGCACTTGTACTATCTTTACAAATGCAAGTATG