Contig 007168:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001K05Sequence365002043 (5)ref|XP_011079740.1|5e-44PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum]733007168 (5)gb|ADL70207.1|2e-75transport inhibitor response 1 [Arabidopsis thaliana] gb|ADL70211.1| transport i
JMSF001L05Sequence392002043 (5)ref|XP_011082496.1|1e-49PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum] ref|XP737007168 (5)gb|ADL70207.1|2e-75transport inhibitor response 1 [Arabidopsis thaliana] gb|ADL70211.1| transport i
JMSF031N17Sequence623002043 (5)gb|AFP19451.1|1e-91transport inhibitor response 1 [Camellia sinensis]734007168 (5)gb|ADL70207.1|2e-67transport inhibitor response 1 [Arabidopsis thaliana] gb|ADL70211.1| transport i
JMSF034F04Sequence707002043 (5)ref|XP_011082496.1|3e-112PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum] ref|XP725007168 (5)gb|ADL70207.1|5e-72transport inhibitor response 1 [Arabidopsis thaliana] gb|ADL70211.1| transport i
JMSF044F03Sequence791002043 (5)ref|XP_011082496.1|5e-135PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum] ref|XP675007168 (5)gb|ADL70207.1|8e-76transport inhibitor response 1 [Arabidopsis thaliana] gb|ADL70211.1| transport i

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF044F03+ ACTGATCGGGTGTTTGAGTAT
rJMSF001L05+ CCTCACTGATCGGGTGTTTGAGTAT
rJMSF001K05+ ACTGATCGGGTGTTTGAGTAT
rJMSF031N17+ ACTGATCGGGTGTTNGAGTAT
rJMSF034F04+ GAGTAT
                      ____________________________________________________________
consensus CCTCACTGATCGGGTGTTTGAGTAT
 
. : . : . : . : . : . :
rJMSF044F03+ ATTGGGACTTACGCGAAGAAGTTAGAGATGCTTTCTATAGCCTTTGCTGGGGATAGTGAC
rJMSF001L05+ ATTGGGACTTACGCGAAGAAGTTAGAGATGCTTTCTATAGCCTTTGCTGGGGATAGTGAC
rJMSF001K05+ ATTGGGACTTACGCGAAGAAGTTAGAGATGCTTTCTATAGCCTTTGCTGGGGATAGTGAC
rJMSF031N17+ ATT-GGACTTACGCGAAGAAGTTAGAGATGCTTTCTATAGCCTTTGCTGGGGATAGTGAC
rJMSF034F04+ ATTGGGACTTACGCGAAGAAGTTAGAGATGCTTTCTATAGCCTTTGCTGGGGATAGTGAC
                      ____________________________________________________________
consensus ATTGGGACTTACGCGAAGAAGTTAGAGATGCTTTCTATAGCCTTTGCTGGGGATAGTGAC
 
. : . : . : . : . : . :
rJMSF044F03+ TTGGGCCTCAACCACGTGCTGTCAGGTTGTGAAAGCCTCCGAAAGTTGGAGATAAGAGAC
rJMSF001L05+ TTGGGCCTCAACCACGTGCTGTCAGGTTGTGAAAGCCTCCGAAAGTTGGAGATAAGAGAC
rJMSF001K05+ TTGGGCCTCAACCACGTGCTGTCAGGTTGTGAAAGCCTCCGAAAGTTGGAGATAAGAGAC
rJMSF031N17+ TTGGGCCTCAACCACGTGCTGTCAGGTTGTGAAAGCCTCCGAAAGTTGGAGATAAGAGAC
rJMSF034F04+ TTGGGCCTCAACCACGTGCTGTCAGGTTGTGAAAGCCTCCGAAAGTTGGAGATAAGAGAC
                      ____________________________________________________________
consensus TTGGGCCTCAACCACGTGCTGTCAGGTTGTGAAAGCCTCCGAAAGTTGGAGATAAGAGAC
 
. : . : . : . : . : . :
rJMSF044F03+ TGCCCATTTGGGGATGATGCTCTCTTAGCCAACGCTGCAAAGCTGGAGACAATGCGATCC
rJMSF001L05+ TGCCCATTTGGGGATGATGCTCTCTTAGCCAACGCTGCAAAGCTGGAGACAATGCGATCC
rJMSF001K05+ TGCCCATTTGGGGATGATGCTCTCTTAGCCAACGCTGCAAAGCTGGAGACAATGCGATCC
rJMSF031N17+ TGCCCATTTGGGGATGATGCTCTCTTAGCCAACGCTGCAAAGCTGGTGACAATGCGATCC
rJMSF034F04+ TGCCCATTTGGGGATGATGCTCTCTTAGCCAACGCTGCAAAGCTGGAGACAATGCGATCC
                      ____________________________________________________________
consensus TGCCCATTTGGGGATGATGCTCTCTTAGCCAACGCTGCAAAGCTGGAGACAATGCGATCC
 
. : . : . : . : . : . :
rJMSF044F03+ CTTTGGATGTCTTCTTGTTCGGTAAGTTTTGGAGCATGCAAGATGCTAGCTAAGAAGATG
rJMSF001L05+ CTTTGGATGTCTTCTTGTTCGGTAAGTTTTGGAGCATGCAAGATGCTAGCTAAGAAGATG
rJMSF001K05+ CTTTGGATGTCTTCTTGTTCGGTAAGTTTTGGAGCATGCAAGATGCTAGCTAAGAAGATG
rJMSF031N17+ CTTTGGATGTCTTCTTGTTCGGTAAGTTTTGGAGCATGCAAGATGCTAGCTAAGAAGATG
rJMSF034F04+ CTTTGGATGTCTTCTTGTTCGGTAAGTTTTGGAGCATGCAAGATGCTAGCTAAGAAGATG
                      ____________________________________________________________
consensus CTTTGGATGTCTTCTTGTTCGGTAAGTTTTGGAGCATGCAAGATGCTAGCTAAGAAGATG
 
. : . : . : . : . : . :
rJMSF044F03+ CCCGGGCTTAACGTTGAAGTTATAGATGAAAGTGACCCTCCAGGTTCAAGGCTGGAAAGC
rJMSF001L05+ CCCGGGCTTAACGTTGAAGTTATAGATGAAAGTGACCCTCCAGGTTCAAGGCTGGAAAGC
rJMSF001K05+ CCCGGGCTTAACGTTGAAGTTATAGATGAAAGTGACCCTCCAGGTTCAAGGCTGGAAAGC
rJMSF031N17+ CCCGGGCTTAACGTTGAAGTTATAGATGAAAGTGACCCTCCAGGTTCAAGGCTGGAAAGC
rJMSF034F04+ CCCGGGCTTAACGTTGAAGTTATAGATGAAAGTGACCCTCCAGGTTCAAGGCTGGAAAGC
                      ____________________________________________________________
consensus CCCGGGCTTAACGTTGAAGTTATAGATGAAAGTGACCCTCCAGGTTCAAGGCTGGAAAGC
 
. : . : . : . : . : . :
rJMSF044F03+ ATTCCTGTTGAGAGATTATACATATACCGAACAGTTTCAGGACCTAGGTTCGATAAGCCT
rJMSF001L05+ ATTCCTGTTGAGAGATTATACATATACCGAACAGTTTCAGGACCTAGGTTCGATAAGCCT
rJMSF001K05+ ATTCCTGTTGAGAGATTATACATATACCGAACAGTTTCAGGACCTAGGTTCGATAAGCCT
rJMSF031N17+ ATTCCTGTTGAGAGATTATACATATACCGAACAGTTTCAGGACCTAGGTTCGATAAGCCT
rJMSF034F04+ ATTCCTGTTGAGAGATTATACATATACCGAACAGTTTCAGGACCTAGGTTCGATAAGCCT
                      ____________________________________________________________
consensus ATTCCTGTTGAGAGATTATACATATACCGAACAGTTTCAGGACCTAGGTTCGATAAGCCT
 
. : . : . : . : . : . :
rJMSF044F03+ GCCTTCGTTTGGATGATGGATAACGATGCAACACCAAGGTGTTCTTGACATTCTTCTTCT
rJMSF001L05+ GCCTTCGTTTGGATGATGGATAACGATGCAACACCAAGGTGTTCTTGACATTCTTCTTCT
rJMSF001K05+ GCCTTCGTTTGGATGATGGATAACGATGCAACACCAAGGTGTTCTTGACATTCTTCTTCT
rJMSF031N17+ GCCTTCGTTTGGATGATGGATAACGATGCAACACCAAGGTGTTCTTGACATTCTTCTTCT
rJMSF034F04+ GCCTTCGTTTGGATGATGGATAACGATGCAACACCAAGGTGTTCTTGACATTCTTCTTCT
                      ____________________________________________________________
consensus GCCTTCGTTTGGATGATGGATAACGATGCAACACCAAGGTGTTCTTGACATTCTTCTTCT
 
. : . : . : . : . : . :
rJMSF044F03+ GCAGGGAGAGGGGAGATTTGTATTTTTCTCGGCATTAATTAGTAGTTCTTGTGGTGGTTG
rJMSF001L05+ GCAGGGAGAGGGGAGATTTGTATTTTTCTCGGCATTAATTAGTAGTTCTTGTGGTGGTTG
rJMSF001K05+ GCAGGGAGAGGGGAGATTTGTATTTTTCTCGGCATTAATTAGTAGTTCTTGTGGTGGTTG
rJMSF031N17+ GCAGGGAGAGGGGAGATTTGTATTTTTCTCGGCATTAATTAGTAGTTCTTGTGGTGGTTG
rJMSF034F04+ GCAGGGAGAGGGGAGATTTGTATTTTTCTCGGCATTAATTAGTAGTTCTTGTGGTGGTTG
                      ____________________________________________________________
consensus GCAGGGAGAGGGGAGATTTGTATTTTTCTCGGCATTAATTAGTAGTTCTTGTGGTGGTTG
 
. : . : . : . : . : . :
rJMSF044F03+ AAGTGCTGAAAAGAGGCTACTCTAGGCATGAGGAGTTGAGAAGCCATATTATTTTAGCCT
rJMSF001L05+ AAGTGCTGAAAAGAGGCTACTCTAGGCATGAGGAGTTGAGAAGCCATATTATTTTAGCCT
rJMSF001K05+ AAGTGCTGAAAAGAGGCTACTCTAGGCATGAGGAGTTGAGAAGCCATATTATTTTAGCCT
rJMSF031N17+ AAGTGCTGAAAAGAGGCTACTCTAGGCATGAGGAGTTGAGAAGCCATATTATTTTAGCCT
rJMSF034F04+ AAGTGCTGAAAAGAGGCTACTCTAGGCATGAGGAGTTGAGAAGCCATATTATTTTAGCCT
                      ____________________________________________________________
consensus AAGTGCTGAAAAGAGGCTACTCTAGGCATGAGGAGTTGAGAAGCCATATTATTTTAGCCT
 
. : . : . : . : . : . :
rJMSF044F03+ TGGCTGAGGTATTCCACAGAAATTAGCAACTCCCATAGACTAAAAGAGATTAAACTCTTC
rJMSF001L05+ TGGCTGAGGTATTCCACAGAAATTAGCAACTCCCATAGACTAAAAGAGATTAAACTCTTC
rJMSF001K05+ TGGCTGAGGTATTCCACAGAAATTAGCAACTCCCATAGACTAAAAGAGATTAAACTCTTC
rJMSF031N17+ TGGCTGAGGTATTCCACAGAAATTAGCAACTCCCATAGACTAAAAGAGATTAAACTCTTC
rJMSF034F04+ TGGCTGAGGTATTCCACAGAAATTAGCAACTCCCATAGACTAAAAGAGATTAAACTCTTC
                      ____________________________________________________________
consensus TGGCTGAGGTATTCCACAGAAATTAGCAACTCCCATAGACTAAAAGAGATTAAACTCTTC
 
. : . : . : . : . : . :
rJMSF044F03+ ATATTGCANCTGTGTATCAATTGTTTTTTCTCTCATTTCCTCTCCAC
rJMSF001L05+ ATATTGCA-CTGTGTATCAATTGTTTTTTCTCTCATTTCCTCTCCACATCTCCCTATGTG
rJMSF001K05+ ATATTGCA-CTGTGTATCAATTGTTTTTTCTCTCATTTCCTCTCCACATCTCCCTATGTG
rJMSF031N17+ ATATTGCA-CTGTGTATCAATTGTTTTTTCTCTCATTTCCTCTCCACATCTCCCTATGTG
rJMSF034F04+ ATATTGCA-CTGTGTATCAATTGTTTTTTCTCTCATTTCCTCTCCACATCTCCCTATGTG
                      ____________________________________________________________
consensus ATATTGCA-CTGTGTATCAATTGTTTTTTCTCTCATTTCCTCTCCACATCTCCCTATGTG
 
. : . : . : . : . : . :
rJMSF001L05+ TTATTGATAGACTTGCAGATCAGTTTCAGCTCTTTGCAGGGCCAAATGCAGAC
rJMSF001K05+ TTATTGATAGACTTGCAGATCAGTTTCAGCTCTTTGCAGGGCCAAATGCAGAC
rJMSF031N17+ TTATTGATAGACTTGCAGATCAGTTTCAGCTCTTTGCAGGGCCAAATGCAGAC
rJMSF034F04+ TTATTGATAGACTTGCAGATCAGTTTCAGCTCTTTGCAGGGCCAAATGCAGACTTGTGCT
                      ____________________________________________________________
consensus TTATTGATAGACTTGCAGATCAGTTTCAGCTCTTTGCAGGGCCAAATGCAGACTTGTGCT