Contig 007166:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033H13Sequence675007166 (2)gb|KJB44076.1|6e-91hypothetical protein B456_007G233200 [Gossypium raimondii] gb|KJB44077.1| hypoth655007166 (2)ref|XP_009761345.1|68.9PREDICTED: uncharacterized protein LOC104213527 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-                                                              GAAATCGAG
                      ____________________________________________________________
consensus                                                                GAAATCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           AAGTGAGAGCGGCCCACAGAAGAATGCATGTGGCTGCCGGAAAGACTAATTTGATAATCT
                      ____________________________________________________________
consensus             AAGTGAGAGCGGCCCACAGAAGAATGCATGTGGCTGCCGGAAAGACTAATTTGATAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           CCATAATCCCAATCCCTCTTCCACGGCTGAGCCACCACCGCTGCTATCTACGCCGCCGCC
                      ____________________________________________________________
consensus             CCATAATCCCAATCCCTCTTCCACGGCTGAGCCACCACCGCTGCTATCTACGCCGCCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           CCCTCCTCATTCTCTCCTCGCCTATAACATTCCCAACCGCCAAGAGATCAATGGTCATCG
                      ____________________________________________________________
consensus             CCCTCCTCATTCTCTCCTCGCCTATAACATTCCCAACCGCCAAGAGATCAATGGTCATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           CTAGCAGCAGCTCCAATCCCAACACCCAAGGAGCATTCACAACAATTGAAGGCAGATTCA
                      ____________________________________________________________
consensus             CTAGCAGCAGCTCCAATCCCAACACCCAAGGAGCATTCACAACAATTGAAGGCAGATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           CTTGCGAAAAGGAGATCAAGAAGAGCAAATTCATCGCCATTGCTGGCCATATCTCCGACC
                      ____________________________________________________________
consensus             CTTGCGAAAAGGAGATCAAGAAGAGCAAATTCATCGCCATTGCTGGCCATATCTCCGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           AACGCCAAGCCGAATCCTTCCTTTCCGAGGTTGGGGATCCTCGTGCCACACATAATTGTT
                      ____________________________________________________________
consensus             AACGCCAAGCCGAATCCTTCCTTTCCGAGGTTGGGGATCCTCGTGCCACACATAATTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           GGGCGTACAAGGTCGGGGATCAATACCGGAGTAATGATGATGGTGAACCATCTGGTACGG
                      ____________________________________________________________
consensus             GGGCGTACAAGGTCGGGGATCAATACCGGAGTAATGATGATGGTGAACCATCTGGTACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           CTGGCAAACCGATACATTCTGCAATTGTTTCTTCGGGATTAGACAGAGTCATGGTTGTTG
                      ____________________________________________________________
consensus             CTGGCAAACCGATACATTCTGCAATTGTTTCTTCGGGATTAGACAGAGTCATGGTTGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           TAATCAGGTATTTTGGAGGAATTAAACTTGGTACTGGCGGACTAGTTAGAGCTTATGGAG
                      ____________________________________________________________
consensus             TAATCAGGTATTTTGGAGGAATTAAACTTGGTACTGGCGGACTAGTTAGAGCTTATGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           GAACTGCTGCAGAATGCTTGAGAAATGCTCCTACGCAGCTTGTAAAATCTAAGGTTCCTA
                      ____________________________________________________________
consensus             GAACTGCTGCAGAATGCTTGAGAAATGCTCCTACGCAGCTTGTAAAATCTAAGGTTCCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           TGGGTGTAGAGGTTCCTTTTGATCTTATAGGGGTTCTGTACCACCAGGTAAGTTCAGTGT
rJMSF033H13+               GTAGAGGTTCCTTTTGATNTTATAGGGGTTCTGTACCNCCAGGTAAGTTCAGTGT
                      ____________________________________________________________
consensus             TGGGTGTAGAGGTTCCTTTTGATCTTATAGGGGTTCTGTACCACCAGGTAAGTTCAGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H13-           GAGCTT                                                      
rJMSF033H13+          GAGCTTGAAACCGCTAAATTCCTTTNTAGTATTTGTCAACATATTCATTTCCAAGGTAAC
                      ____________________________________________________________
consensus             GAGCTTGAAACCGCTAAATTCCTTTNTAGTATTTGTCAACATATTCATTTCCAAGGTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H13+          NGGGTCTCTTTACGTTATGATTTCATATATTAATATNTGAANGTAGTATGNGCNGCAATT
                      ____________________________________________________________
consensus             NGGGTCTCTTTACGTTATGATTTCATATATTAATATNTGAANGTAGTATGNGCNGCAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H13+          ATAAAGNTGATTTACGAACCTTTGCTCTNTCATAACTATAATAAACTGTTACGNGAGTTT
                      ____________________________________________________________
consensus             ATAAAGNTGATTTACGAACCTTTGCTCTNTCATAACTATAATAAACTGTTACGNGAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H13+          TGATTCTCTTGTCTTTCTCNNTTCNTTAATTTTGCCCTTNTCCNTGGNGACTTGNTGCAG
                      ____________________________________________________________
consensus             TGATTCTCTTGTCTTTCTCNNTTCNTTAATTTTGCCCTTNTCCNTGGNGACTTGNTGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H13+          CTCCAAACTTATAAAGTTGAAGNCNTTAAACNGGNTTNCGATACNGGGAAAGGNGGNGTC
                      ____________________________________________________________
consensus             CTCCAAACTTATAAAGTTGAAGNCNTTAAACNGGNTTNCGATACNGGGAAAGGNGGNGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H13+          NCGATGGTTACTTTCAAAGTTGATTTTGNCCGCNTGCAAAGTTTAGNGGAAGCTATCAAA
                      ____________________________________________________________
consensus             NCGATGGTTACTTTCAAAGTTGATTTTGNCCGCNTGCAAAGTTTAGNGGAAGCTATCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H13+          ACCAATTGCNGTCGGGATATTGCAATTTTCAAGCGNTGAAATATTNTTACGNGCTCNCTN
                      ____________________________________________________________
consensus             ACCAATTGCNGTCGGGATATTGCAATTTTCAAGCGNTGAAATATTNTTACGNGCTCNCTN
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H13+          TCAAGGAAGCCCGCTNTGTNTTACNGNGAATTGNGGCCNTGTTCTGTATTCCTGATTCCN
                      ____________________________________________________________
consensus             TCAAGGAAGCCCGCTNTGTNTTACNGNGAATTGNGGCCNTGTTCTGTATTCCTGATTCCN
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H13+          AGNTACTATAGTTTTTTGGNGATAGCCCCCTCCTAGAATCCTAGGNAGATATATACNACN
                      ____________________________________________________________
consensus             AGNTACTATAGTTTTTTGGNGATAGCCCCCTCCTAGAATCCTAGGNAGATATATACNACN
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H13+          AACTTTTTTTTTTTTCTGTATCCAAATATTTCCCGCAGATGGACAAGAATACTTATCGTT
                      ____________________________________________________________
consensus             AACTTTTTTTTTTTTCTGTATCCAAATATTTCCCGCAGATGGACAAGAATACTTATCGTT