| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014E24 | Sequence | 825 | 007165 (6) | ref|XP_009595312.1| | 1e-111 | PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial | |||||
| JMFF036L07 | Sequence | 752 | 007165 (6) | ref|XP_009595312.1| | 3e-98 | PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial | |||||
| JMSF026L24 | Sequence | 688 | 007165 (6) | ref|XP_006352610.1| | 3e-102 | PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial | 736 | 007165 (6) | ref|XP_009595312.1| | 2e-97 | PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial |
| JMSF033F10 | Sequence | 675 | 007165 (6) | ref|XP_006352610.1| | 3e-102 | PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial | 762 | 007165 (6) | emb|CDP04379.1| | 1e-91 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF033F10- CAGCATTCTCT
JMSF026L24- GAGCTTTTGCTCCCAGCATTCTCT
____________________________________________________________
consensus GAGCTTTTGCTCCCAGCATTCTCT
. : . : . : . : . : . :
JMSF033F10- GTTTCTAAAAGACTAAAACCCTAAATCTCATATCCAAAGCCTAACAACAATGGCAGCAAC
JMSF026L24- GTTTCTAAAAGACTAAAACCCTAAATCTCATATCCAAAGCCTAACAACAATGGCAGCAAC
____________________________________________________________
consensus GTTTCTAAAAGACTAAAACCCTAAATCTCATATCCAAAGCCTAACAACAATGGCAGCAAC
. : . : . : . : . : . :
JMSF033F10- GATTCGCAGCAAACTCCGATCCATTACACTGCATCATCAGCCGCATTTCCGCCGCTTTGC
JMSF026L24- GATTCGCAGCAAACTCCGATCCATTACACTGCATCATCAGCCGCATTTCCGCCGCTTTGC
____________________________________________________________
consensus GATTCGCAGCAAACTCCGATCCATTACACTGCATCATCAGCCGCATTTCCGCCGCTTTGC
. : . : . : . : . : . :
JMSF033F10- GACCTCGATTTTGAATCCAGATTCCAAAACCCCGCTCTCAAGCAAAGAGAAATCTCGGGC
JMSF026L24- GACCTCGATTTTGAATCCAGATTCCAAAACCCCGCTCTCAAGCAAAGAGAAATCTCGGGC
____________________________________________________________
consensus GACCTCGATTTTGAATCCAGATTCCAAAACCCCGCTCTCAAGCAAAGAGAAATCTCGGGC
. : . : . : . : . : . :
JMSF033F10- TGCTCTTTCTCTGCTCCGGACCGAGACCAACCCGGAACGCATCATCGATATATGCAGGGC
JMSF026L24- TGCTCTTTCTCTGCTCCGGACCGAGACCAACCCGGAACGCATCATCGATATATGCAGGGC
____________________________________________________________
consensus TGCTCTTTCTCTGCTCCGGACCGAGACCAACCCGGAACGCATCATCGATATATGCAGGGC
. : . : . : . : . : . :
JMSF033F10- CGCCTCGTTAACCCCGGAGTCACACCTCGACCGAATCGCCTACTCCAAGGCCATTGCAAA
JMSF026L24- CGCCTCGTTAACCCCGGAGTCACACCTCGACCGAATCGCCTACTCCAAGGCCATTGCAAA
____________________________________________________________
consensus CGCCTCGTTAACCCCGGAGTCACACCTCGACCGAATCGCCTACTCCAAGGCCATTGCAAA
. : . : . : . : . : . :
JMSF033F10- GCTCCGGAACTCTAGTTACTTCGGGGGAATCCGGGAATTTCTCGAAGAGTCCAAGTCCCA
JMSF026L24- GCTCCGGAACTCTAGTTACTTCGGGGGAATCCGGGAATTTCTCGAAGAGTCCAAGTCCCA
____________________________________________________________
consensus GCTCCGGAACTCTAGTTACTTCGGGGGAATCCGGGAATTTCTCGAAGAGTCCAAGTCCCA
. : . : . : . : . : . :
JMSF033F10- ACCTGGTTTCAGGTCAGAAAGATTTATTTCTCATTTTGTTGTTCTCTATGGGCAAGCTGG
JMSF026L24- ACCTGGTTTCAGGTCAGAAAGATTTATTTCTCATTTTGTTGTTCTCTATGGGCAAGCTGG
____________________________________________________________
consensus ACCTGGTTTCAGGTCAGAAAGATTTATTTCTCATTTTGTTGTTCTCTATGGGCAAGCTGG
. : . : . : . : . : . :
JMSF033F10- AATGCTCAATGACGCGATTCAGACCTTTGAGCAAATGGAGGAGATGGGCATCCAACGATC
JMSF026L24- AATGCTCAATGACGCGATTCAGACCTTTGAGCAAATGGAGGAGATGGGCATCCAACGATC
____________________________________________________________
consensus AATGCTCAATGACGCGATTCAGACCTTTGAGCAAATGGAGGAGATGGGCATCCAACGATC
. : . : . : . : . : . :
JMSF033F10- GGTGAAATCACTCAACTCTCTGTTATTTTCTTGCCTTGCAGCTAAAAATTATGGAGAAAT
JMSF026L24- GGTGAAATCACTCAACTCTCTGTTATTTTCTTGCCTTGCAGCTAAAAATTATGGAGAAAT
____________________________________________________________
consensus GGTGAAATCACTCAACTCTCTGTTATTTTCTTGCCTTGCAGCTAAAAATTATGGAGAAAT
. : . : . : . : . : . :
JMSF033F10- GAAGAGAATTTTCGTGGAATTTCCTAAAAAATATGGGATTATTCCTAACTTAGATACCTA
JMSF026L24- GAAGAGAATTTTCGTGGAATTTCCTAAAAAATATGGGATTATTCCTAACTTAGATACCTA
____________________________________________________________
consensus GAAGAGAATTTTCGTGGAATTTCCTAAAAAATATGGGATTATTCCTAACTTAGATACCTA
. : . : . : . : . : . :
JMSF033F10- TAATACGATGATTGAGGGGTTTTGCGACTCGGGTTCTTCTAGTTCTGTTTATTCCATATT
JMSF026L24- TAATACGATGATTGAGGGGTTTTGCGACTCGGGTTCTTCTAGTTCTGTTTATTCCATATT
rJMFF014E24+ ATACGATGATTGAGGGGTTTTGCGACTCGGGTTCTTCTAGTTCTGTTTATTCCATATT
____________________________________________________________
consensus TAATACGATGATTGAGGGGTTTTGCGACTCGGGTTCTTCTAGTTCTGTTTATTCCATATT
. : . : . : . : . : . :
JMSF033F10- GGAT
JMSF026L24- GGAT
rJMSF026L24+ ATAAAGTTAAGCCGAATGCTACAACTTTTGGAAACTGCCTTTC
rJMFF036L07+ GGAATAAAGTTAAGCCGAATGCTACAACTTTTGGAAACTGCCTTTC
rJMFF014E24+ GGATGAAATGAATAGGAATAAAGTTAAGCCGAATGCTACAACTTTTGGAAACTGCCTTTC
rJMSF033F10+ ATAAAGTTAAGCCGAATGCTACAAC-TTTGGAAACTGCCTTTC
____________________________________________________________
consensus GGATGAAATGAATAGGAATAAAGTTAAGCCGAATGCTACAACTTTTGGAAACTGCCTTTC
. : . : . : . : . : . :
rJMSF026L24+ AGGTTTTTACAAGGAAGAGAAGTTTGAGGATGTTGGGAAAATATTGGAGATGATGAAGCA
rJMFF036L07+ AGGTTTTTACAAGGAAGAGAAGTTTGAGGATGTTGGGAAAATATTGGAGATGATGAAGCA
rJMFF014E24+ AGGTTTTTACAAGGAAGAGAAGTTTGAGGATGTTGGGAAAATATTGGAGATGATGAAGCA
rJMSF033F10+ AGGTTTTTACAAGGAAGAGAAGTTTGAGGATGTTGGGAAAATATTGGAGATGATGAAGCA
____________________________________________________________
consensus AGGTTTTTACAAGGAAGAGAAGTTTGAGGATGTTGGGAAAATATTGGAGATGATGAAGCA
. : . : . : . : . : . :
rJMSF026L24+ ACATGGTGTTGCTTCTGGGATTGGTACTTACAACATAAGGATTGAGAGCTTGTGTAAGCT
rJMFF036L07+ ACATGGTGTTGCTTCTGGGATTGGTACTTACAACATAAGGATTGAGAGCTTGTGTAAGCT
rJMFF014E24+ ACATGGTGTTGCTTCTGGGATTGGTACTTACAACATAAGGATTGAGAGCTTGTGTAAGCT
rJMSF033F10+ ACATGGTGTTGCTTCTGGGATTGGTACTTACAACATAAGGATTGAGAGCTTGTGTAAGCT
____________________________________________________________
consensus ACATGGTGTTGCTTCTGGGATTGGTACTTACAACATAAGGATTGAGAGCTTGTGTAAGCT
. : . : . : . : . : . :
rJMSF026L24+ CAAGAGGTCGAAGGAGGCAAAGGCATTGCTTGGTGGAATTTTGTCTAGGGGTGTGAAACC
rJMFF036L07+ CAAGAGGTCGAAGGAGGCAAAGGCATTGCTTGGTGGAATTTTGTCTAGGGGTGTGAAACC
rJMFF014E24+ CAAGAGGTCGAAGGAGGCAAAGGCATTGCTTGGTGGAATTTTGTCTAGGGGTGTGAAACC
rJMSF033F10+ CAAGAGGTCGAAGGAGGCAAAGGCATTGCTTGGTGGAATTTTGTCTAGGGGTGTGAAACC
____________________________________________________________
consensus CAAGAGGTCGAAGGAGGCAAAGGCATTGCTTGGTGGAATTTTGTCTAGGGGTGTGAAACC
. : . : . : . : . : . :
rJMSF026L24+ TAATTCTGTTACCTATACCCATTTGATTCATGGATTTTGTAAGGAAGGTGATTTGGAAGG
rJMFF036L07+ TAATTCTGTTACCTATACCCATTTGATTCATGGATTTTGTAAGGAAGGTGATTTGGAAGG
rJMFF014E24+ TAATTCTGTTACCTATACCCATTTGATTCATGGATTTTGTAAGGAAGGTGATTTGGAAGG
rJMSF033F10+ TAATTCTGTTACCTATACCCATTTGATTCATGGATTTTGTAAGGAAGGTGATTTGGAAGG
____________________________________________________________
consensus TAATTCTGTTACCTATACCCATTTGATTCATGGATTTTGTAAGGAAGGTGATTTGGAAGG
. : . : . : . : . : . :
rJMSF026L24+ GGCAAAGAGTCTGTTTAAGGAGATGGTTGATAGTGGCTGCCAACCAGGTAGCGAATGCTA
rJMFF036L07+ GGCAAAGAGTCTGTTTAAGGAGATGGTTGATAGTGGCTGCCAACCAGGTAGCGAATGCTA
rJMFF014E24+ GGCAAAGAGTCTGTTTAAGGAGATGGTTGATAGTGGCTGCCAACCAGGTAGCGAATGCTA
rJMSF033F10+ GGCAAAGAGTCTGTTTAAGGAGATGGTTGATAGTGGCTGCCAACCAGGTAGCGAATGCTA
____________________________________________________________
consensus GGCAAAGAGTCTGTTTAAGGAGATGGTTGATAGTGGCTGCCAACCAGGTAGCGAATGCTA
. : . : . : . : . : . :
rJMSF026L24+ TTTTTCGCTGGTTTACTTTTTATGTAAAGGTAAGGATTTTGAGGCTGCAGTGAAGATCTG
rJMFF036L07+ TTTTTCGCTGGTTTACTTTTTATGTAAAGGTAAGGATTTTGAGGCTGCAGTGAAGATCTG
rJMFF014E24+ TTTTTCGCTGGTTTACTTTTTATGTAAAGGTAAGGATTTTGAGGCTGCAGTGAAGATCTG
rJMSF033F10+ TTTTTCGCTGGTTTACTTTTTATGTAAAGGTAAGGATTTTGAGGCTGCAGTGAAGATCTG
____________________________________________________________
consensus TTTTTCGCTGGTTTACTTTTTATGTAAAGGTAAGGATTTTGAGGCTGCAGTGAAGATCTG
. : . : . : . : . : . :
rJMSF026L24+ CAAGGAATGTATGGCAAAGGGCTGGGTACCAAATTTCACCACTATGAAGTTGCTTGTGGA
rJMFF036L07+ CAAGGAATGTATGGCAAAGGGCTGGGTACCAAATTTCACCACTATGAAGTTGCTTGTGGA
rJMFF014E24+ CAAGGAATGTATGGCAAAGGGCTGGGTACCAAATTTCACCACTATGAAGTTGCTTGTGGA
rJMSF033F10+ CAAGGAATGTATGGCAAAGGGCTGGGTACCAAATTTCACCACTATGAAGTTGCTTGTGGA
____________________________________________________________
consensus CAAGGAATGTATGGCAAAGGGCTGGGTACCAAATTTCACCACTATGAAGTTGCTTGTGGA
. : . : . : . : . : . :
rJMSF026L24+ TGGTCTTGCAAGCACTTCAAAGGTCGAGGAGGCAAAGGAAATCATTGGACAGTTGAAGGA
rJMFF036L07+ TGGTCTTGCAAGCACTTCAAAGGTCGAGGAGGCAAAGGAAATCATTGGACAGTTGAAGGA
rJMFF014E24+ TGGTCTTGCAAGCACTTCAAAGGTCGAGGAGGCAAAGGAAATCATTGGACAGTTGAAGGA
rJMSF033F10+ TGGTCTTGCAAGCACTTCAAAGGTCGAGGAGGCAAAGGAAATCATTGGACAGTTGAAGGA
____________________________________________________________
consensus TGGTCTTGCAAGCACTTCAAAGGTCGAGGAGGCAAAGGAAATCATTGGACAGTTGAAGGA
. : . : . : . : . : . :
rJMSF026L24+ GAAGTTCTCTAGAAACGCTGACAGGTGGACTGAGATTGAAGAGGGGCTAGCCAAGTAGGG
rJMFF036L07+ GAAGTTCTCTAGAAACGCTGACAGGTGGACTGAGATTGAAGAGGGGCTAGCCAAGTAGGG
rJMFF014E24+ GAAGTTCTCTAGAAACGCTGACAGGTGGACTGAGATTGAAGAGGGGCTAGCCAAGTAGGG
rJMSF033F10+ GAAGTTCTCTAGAAACGCTGACAGGTGGACTGAGATTGAAGAGGGGCTAGCCAAGTAGGG
____________________________________________________________
consensus GAAGTTCTCTAGAAACGCTGACAGGTGGACTGAGATTGAAGAGGGGCTAGCCAAGTAGGG
. : . : . : . : . : . :
rJMSF026L24+ AAAGGAAGCATGGTAAACTTGTCTAGTTGTCTAGATTTTGAATAATGTTGTGGTATTGAA
rJMFF036L07+ AAAGGAAGCATGGTAAACTTGTCTAGTTGTCTAGATTTTGAATAATGTTGTGGTATTGAA
rJMFF014E24+ AAAGGAAGCATGGTAAACTTGTCTAGTTGTCTAGATTTTGAATAATGTTGTGGTATTGAA
rJMSF033F10+ AAAGGAAGCATGGTAAACTTGTCTAGTTGTCTAGATTTTGAATAATGTTGTGGTATTGAA
____________________________________________________________
consensus AAAGGAAGCATGGTAAACTTGTCTAGTTGTCTAGATTTTGAATAATGTTGTGGTATTGAA
. : . : . : . : . : . :
rJMSF026L24+ TTTTTTGATCTTTCATGTTTAGCTGTTTAAATAGTTAGCATTGACTGTCTCCTGCTGGTT
rJMFF036L07+ TTTTTTGATCTTTCATGTTTAGCTGTTTAAATAGTTAGCATTGACTGTCTCCTGCTGGTT
rJMFF014E24+ TTTTTTGATCTTTCATGTTTAGCTGTTTAAATAGTTAGCATTGACTGTCTCCTGCTGGTT
rJMSF033F10+ TTTTTTGATCTTTCATGTTTAGCTGTTTAAATAGTTAGCATTGACTGTCTCCTGCTGGTT
____________________________________________________________
consensus TTTTTTGATCTTTCATGTTTAGCTGTTTAAATAGTTAGCATTGACTGTCTCCTGCTGGTT
. : . : . : . : . : . :
rJMSF026L24+ TAAAAGAATTTGATGGTGATATTTATCAAA
rJMFF036L07+ TAAAAGAATTTGATGGTGATATTTATCAAATACTCTTCTCC
rJMFF014E24+ TAAAAGAATTTGATGGTGATATTTATCAAATACTCTTCTCC
rJMSF033F10+ TAAAAGAATTTGATGGTGATATTTATCAAATACTCTTCTCCATAATTAATCCATTTGCAC
____________________________________________________________
consensus TAAAAGAATTTGATGGTGATATTTATCAAATACTCTTCTCCATAATTAATCCATTTGCAC