Contig 007164:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011E23Sequence480007164 (6)ref|XP_002285833.1|1e-86PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis vinifera] emb|CBI1907
JMFN015E07Sequence632007164 (6)ref|XP_002285833.1|9e-83PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis vinifera] emb|CBI1907
JMSF025E03Sequence602007164 (6)ref|XP_002285833.1|6e-83PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis vinifera] emb|CBI1907666007164 (6)ref|XP_002285833.1|1e-82PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis vinifera] emb|CBI1907
JMSF033B03Sequence664007164 (6)gb|ADR30788.1|5e-78chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]716007164 (6)gb|ADR30788.1|1e-77chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]

Alignment

This contig is upended


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rJMSF025E03-                                                             AATTGAGTT
                      ____________________________________________________________
consensus                                                                AATTGAGTT
 
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rJMSF025E03-          TTTACATCATTCAAACAAAAAAGAAAGGGCCAAGAAAATATCCAAATTTGAAATTTGGAT
JMSF033B03+                                                                   GGAT
JMFN015E07+                                     GGGCCAAGAAAATATCCAAATTTGAAATTTGGAT
JMSF025E03+                                                                  TGGAT
rJMSF033B03-              CATCATTCAAACAAAAAAGAAAGGGCCAAGAAAATATCCAAATTTGAAATTTGGAT
                      ____________________________________________________________
consensus             TTTACATCATTCAAACAAAAAAGAAAGGGCCAAGAAAATATCCAAATTTGAAATTTGGAT
 
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rJMSF025E03-          ACAATGAAATAAAGGTGGTCATACATTATCAATGAACATTTTCGCAACAGGCATTGATAC
JMSF033B03+           ACAATGAAATAAAGGTGGTCATACATTATCAATGAACATTTTCGCAACAGGCATTGATAC
JMFN015E07+           ACAATGAAATAAAGGTGGTCATACATTATCAATGAACATTTTCGCAACAGGCATTGATAC
JMSF025E03+           ACAATGAAATAAAGGTGGTCATACATTATCAATGAACATTTTCGCAACAGGCATTGATAC
rJMSF033B03-          ACAATGAAATAAAGGTGGTCATACATTATCAATGAACATTTTCGCAACAGGCATTGATAC
                      ____________________________________________________________
consensus             ACAATGAAATAAAGGTGGTCATACATTATCAATGAACATTTTCGCAACAGGCATTGATAC
 
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rJMSF025E03-          AAGTCAGTTACAGAATCTAGTTCGGATTAACGAGGTGCTTTCTTCTTCCCTGCAATGGCC
JMSF033B03+           AAGTCAGTTACAGAATCTAGTTCGGATTAACGAGGTGCTTTCTTCTTCCCTGCAATGGCC
JMFN015E07+           AAGTCAGTTACAGAATCTAGTTCGGATTAACGAGGTGCTTTCTTCTTCCCTGCAATGGCC
JMFN011E23+                                                         TCCCTGCAATGGCC
JMSF025E03+           AAGTCAGTTACAGAATCTAGTTCGGATTAACGAGGTGCTTTCTTCTTCCCTGCAATGGCC
rJMSF033B03-          AAGTCAGTTACAGAATCTAGTTCGGATTAACGAGGTGCTTTCTTCTTCCCTGCAATGGCC
                      ____________________________________________________________
consensus             AAGTCAGTTACAGAATCTAGTTCGGATTAACGAGGTGCTTTCTTCTTCCCTGCAATGGCC
 
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rJMSF025E03-          ACCTTCTTGCCCTTTAGAGTACGGCAATTGTTCTTCGTCCGCTGTCCTCTGCATGGCAAT
JMSF033B03+           ACCTTCTTGCCCTTTAGAGTACGGCAATTGTTCTTCGTCCGCTGTCCTCTGCATGGCAAT
JMFN015E07+           ACCTTCTTGCCCTTTAGAGTACGGCAATTGTTCTTCGTCCGCTGTCCTCTGCATGGCAAT
JMFN011E23+           ACCTTCTTGCCCTTTAGAGTACGGCAATTGTTCTTCGTCCGCTGTCCTCTGCATGGCAAT
JMSF025E03+           ACCTTCTTGCCCTTTAGAGTACGGCAATTGTTCTTCGTCCGCTGTCCTCTGCATGGCAAT
rJMSF033B03-          ACCTTCTTGCCCTTTAGAGTACGGCAATTGTTCTTCGTCCGCTGTCCTCTGCATGGCAAT
                      ____________________________________________________________
consensus             ACCTTCTTGCCCTTTAGAGTACGGCAATTGTTCTTCGTCCGCTGTCCTCTGCATGGCAAT
 
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rJMSF025E03-          CCTTGAATGTGTCTTATGCCTCTGTAGCACTGAATCTCCTTCAGCCTCCTAATCGCAAGG
JMSF033B03+           CCTTGAATGTGTCTTATGCCTCTGTAGCACTGAATCTCCTTCAGCCTCCTAATCGCAAGG
JMFN015E07+           CCTTGAATGTGTCTTATGCCTCTGTAGCACTGAATCTCCTTCAGCCTCCTAATCGCAAGG
JMFN011E23+           CCTTGAATGTGTCTTATGCCTCTGTAGCACTGAATCTCCTTCAGCCTCCTAATCGCAAGG
JMSF025E03+           CCTTGAATGTGTCTTATGCCTCTGTAGCACTGAATCTCCTTCAGCCTCCTAATCGCAAGG
rJMSF033B03-          CCTTGAATGTGTCTTATGCCTCTGTAGCACTGAATCTCCTTCAGCCTCCTAATCGCAAGG
                      ____________________________________________________________
consensus             CCTTGAATGTGTCTTATGCCTCTGTAGCACTGAATCTCCTTCAGCCTCCTAATCGCAAGG
 
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rJMSF025E03-          GCGTTGAATCGCCTGAGGTCGCCTTCAATCATGTACTTTGAGACTTCGTCACGGAGAGTA
JMSF033B03+           GCGTTGAATCGCCTGAGGTCGCCTTCAATCATGTACTTTGAGACTTCGTCACGGAGAGTA
JMFN015E07+           GCGTTGAATCGCCTGAGGTCGCCTTCAATCATGTACTTTGAGACTTCGTCACGGAGAGTA
JMFN011E23+           GCGTTGAATCGCCTGAGGTCGCCTTCAATCATGTACTTTGAGACTTCGTCACGGAGAGTA
JMSF025E03+           GCGTTGAATCGCCTGAGGTCGCCTTCAATCATGTACTTTGAGACTTCGTCACGGAGAGTA
rJMSF033B03-          GCGTTGAATCGCCTGAGGTCGCCTTCAATCATGTACTTTGAGACTTCGTCACGGAGAGTA
                      ____________________________________________________________
consensus             GCGTTGAATCGCCTGAGGTCGCCTTCAATCATGTACTTTGAGACTTCGTCACGGAGAGTA
 
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rJMSF025E03-          ATGAGCTCCTCCTGGGACAATTCCTTGGTGATCTTGTTGTCCATGCCGATGTCGGAGAGT
JMSF033B03+           ATGAGCTCCTCCTGGGACAATTCCTTGGTGATCTTGTTGTCCATGCCGATGTCGGAGAGT
JMFN015E07+           ATGAGCTCCTCCTGGGACAATTCCTTGGTGATCTTGTTGTCCATGCCGATGTCGGAGAGT
JMFN011E23+           ATGAGCTCCTCCTGGGACAATTCCTTGGTGATCTTGTTGTCCATGCCGATGTCGGAGAGT
JMSF025E03+           ATGAGCTCCTCCTGGGACAATTCCTTGGTGATCTTGTTGTCCATGCCGATGTCGGAGAGT
rJMSF033B03-          ATGAGCTCCTCCTGGGACAATTCCTTGGTGATCTTGTTGTCCATGCCGATGTCGGAGAGT
                      ____________________________________________________________
consensus             ATGAGCTCCTCCTGGGACAATTCCTTGGTGATCTTGTTGTCCATGCCGATGTCGGAGAGT
 
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rJMSF025E03-          ATCTGTCTTGCTCTGCTGCGCCCAACCCCATGGATGTACTGCAGCGAGTACTCCACTCTC
JMSF033B03+           ATCTGTCTTGCTCTGCTGCGCCCAACCCCATGGATGTACTGCAGCGAGTACTCCACTCTC
JMFN015E07+           ATCTGTCTTGCTCTGCTGCGCCCAACCCCATGGATGTACTGCAGCGAGTACTCCACTCTC
JMFN011E23+           ATCTGTCTTGCTCTGCTGCGCCCAACCCCATGGATGTACTGCAGCGAGTACTCCACTCTC
JMSF025E03+           ATCTGTCTTGCTCTGCTGCGCCCAACCCCATGGATGTACTGCAGCGAGTACTCCACTCTC
rJMSF033B03-          ATCTGTCTTGCTCTGCTGCGCCCAACCCCATGGATGTACTGCAGCGAGTACTCCACTCTC
                      ____________________________________________________________
consensus             ATCTGTCTTGCTCTGCTGCGCCCAACCCCATGGATGTACTGCAGCGAGTACTCCACTCTC
 
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rJMSF025E03-          TTGTTGTTGGGTATCTCCACTCCCCCCACACGCACGCACTTGATGCTCAAACCCCCAATC
JMSF033B03+           TTGTTGTTGGGTATCTCCACTCCCCCCACACGCACGCACTTGATGCTCAAACCCCCAATC
JMFN015E07+           TTGTTGTTGGGTATCTCCACTCCCCCCACACGCACGCACTTGATGCTCAAACCCCCAATC
JMFN011E23+           TTGTTGTTGGGTATCTCCACTCCCCCCACACGCACGCACTTGATGCTCAAACCCCCAATC
JMSF025E03+           TTGTTGTTGGGTATCTCCACTCCCCCCACACGCACGCACTTGATGCTCAAACCCCCAATC
rJMSF033B03-          TTGTTGTTGGGTATCTCCACTCCCCCCACACGCACGCACTTGATGCTCAAACCCCCAATC
                      ____________________________________________________________
consensus             TTGTTGTTGGGTATCTCCACTCCCCCCACACGCACGCACTTGATGCTCAAACCCCCAATC
 
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rJMSF025E03-          TTTGGAGAAGTTGAAATGGGGAAGGAGAGAGAGGTCTTTCGGTTGGAGGAGGGGAGGGCA
JMSF033B03+           TTTGGAGAAGTTGAAATGGGGAAGGAGAGAGAGGTCTTTCGGTTGGAGGAGGGGAGGGCA
JMFN015E07+           TTTGGAGAAGTTGAAATGGGGAAGGAGAGAGAGGTCTTTCGGTTGGAGGAGGGGAGGGCA
JMFN011E23+           TTTGGAGAAGTTGAAATGGGGAAGGAGAGAGAGGTCTTTCGGTTGGAGGAGGGGAGGGCA
JMSF025E03+           TTTGGAGAAGTTGAAATGGGGAAGGAGAGAGAGGTCTTTCGGTTGGAGGAGGGGAGGGCA
rJMSF033B03-          TTTGGAGAAGTTGAAATGGGGAAGGAGAGAGAGGTCTTTCGGTTGGAGGAGGGGAGGGCA
                      ____________________________________________________________
consensus             TTTGGAGAAGTTGAAATGGGGAAGGAGAGAGAGGTCTTTCGGTTGGAGGAGGGGAGGGCA
 
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rJMSF025E03-          TTGGTGATAATGGAGAGTGATGGCAGAACTGGAGTTGCTAGCGCTTGCGCCATCGC    
JMSF033B03+           TTGGTGATAATGGAGAGTGATGGCAGAACTGGAGTTGCTAGCGCTTGCGCCATCGCAGAA
JMFN015E07+           TTGGTGATAATGGAGAGTGATGGCAGAACTGGAGTTGCTAGCGCTTGCGCCATCGC    
JMFN011E23+           TTGGTGATAATGGAGAGTGATGGCAGAACTGGAGTTGCTAGCGCTT              
JMSF025E03+           TTGGTGATAATGGAGAGTGATGGCAGAACTGGAGTTGCTAGCGCTTGCGCCATCGC    
rJMSF033B03-          TTGGTGATAATGGAGAGTGATGGCAGAACTGGAGTTGCTAGCGCTTGCGCCATCGCAGAA
                      ____________________________________________________________
consensus             TTGGTGATAATGGAGAGTGATGGCAGAACTGGAGTTGCTAGCGCTTGCGCCATCGCAGAA
 
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JMSF033B03+           GATAAGAGGGAGGAGATAGAATTGAAGGATGATGCCAATTAATTCTCTTATCCTTTGGTC
rJMSF033B03-          GATAAGAGGGAGGAGATAGAATTGAAGGATGATGCCAATTAATTCTCTTATCCTTTGGTC
                      ____________________________________________________________
consensus             GATAAGAGGGAGGAGATAGAATTGAAGGATGATGCCAATTAATTCTCTTATCCTTTGGTC