Contig 007160:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031L16Sequence520007160 (4)gb|KJB83786.1|4e-49hypothetical protein B456_013G264400, partial [Gossypium raimondii]489007160 (4)gb|KJB83786.1|3e-49hypothetical protein B456_013G264400, partial [Gossypium raimondii]
JMSF032H06Sequence514007160 (4)gb|KJB83786.1|3e-49hypothetical protein B456_013G264400, partial [Gossypium raimondii]457007160 (4)gb|KJB83786.1|2e-49hypothetical protein B456_013G264400, partial [Gossypium raimondii]

Alignment

This contig is upended


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JMSF032H06-                                  GACCAATTCTTCAATCTTCCAATCGAAACCCTAGAAA
JMFF031L16-                                      AATTCTTCAATCTTCCAATCGAAACCCTAGAAA
rJMFF031L16+                                     AATTCTTCAATCTTCCAATCGAAACCCTAGAAA
rJMSF032H06+                                     AATTCTTCAATCTTCCAATCGAAACCCTAGAAA
                      ____________________________________________________________
consensus                                    GACCAATTCTTCAATCTTCCAATCGAAACCCTAGAAA
 
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JMSF032H06-           GCTTTTCTCATCAAATTTCTCAGTGCGAAAATGTCAGGCCGTGGAAAGGGAGGCAAGGGC
JMFF031L16-           GCTTTTCTCATCAAATTTCTCAGTGCGAAAATGTCAGGCCGTGGAAAGGGAGGCAAGGGC
rJMFF031L16+          GCTTTTCTCATCAAATTTCTCAGTGCGAAAATGTCAGGCCGTGGAAAGGGAGGCAAGGGC
rJMSF032H06+          GCTTTTCTCATCAAATTTCTCAGTGCGAAAATGTCAGGCCGTGGAAAGGGAGGCAAGGGC
                      ____________________________________________________________
consensus             GCTTTTCTCATCAAATTTCTCAGTGCGAAAATGTCAGGCCGTGGAAAGGGAGGCAAGGGC
 
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JMSF032H06-           TTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATC
JMFF031L16-           TTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATC
rJMFF031L16+          TTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATC
rJMSF032H06+          TTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATC
                      ____________________________________________________________
consensus             TTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATC
 
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JMSF032H06-           ACCAAGCCCGCCATCCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTC
JMFF031L16-           ACCAAGCCCGCCATCCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTC
rJMFF031L16+          ACCAAGCCCGCCATCCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTC
rJMSF032H06+          ACCAAGCCCGCCATCCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTC
                      ____________________________________________________________
consensus             ACCAAGCCCGCCATCCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTC
 
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JMSF032H06-           ATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCG
JMFF031L16-           ATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCG
rJMFF031L16+          ATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCG
rJMSF032H06+          ATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCG
                      ____________________________________________________________
consensus             ATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCG
 
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JMSF032H06-           GTGACCTACACGGAGCACGCCCGGAGAAAGACCGTTACGGCGATGGACGTGGTTTACGCG
JMFF031L16-           GTGACCTACACGGAGCACGCCCGGAGAAAGACCGTTACGGCGATGGACGTGGTTTACGCG
rJMFF031L16+          GTGACCTACACGGAGCACGCCCGGAGAAAGACCGTTACGGCGATGGACGTGGTTTACGCG
rJMSF032H06+          GTGACCTACACGGAGCACGCCCGGAGAAAGACCGTTACGGCGATGGACGTGGTTTACGCG
                      ____________________________________________________________
consensus             GTGACCTACACGGAGCACGCCCGGAGAAAGACCGTTACGGCGATGGACGTGGTTTACGCG
 
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JMSF032H06-           CTCAAGAGGCAGGGAAGGACTTTGTACGG                               
JMFF031L16-           CTCAAGAGGCAGGGAAGGACTTTGTACGG                               
rJMFF031L16+          CTCAAGAGGCAGGGAAGGACTTTGTACGGATTTGGTGGTTAGGAGCTTCATAAACTAGGG
rJMSF032H06+          CTCAAGAGGCAGGGAAGGACTTTGTACGGATTTGGTGGTTAGGAGCTTCATAAACTAGGG
                      ____________________________________________________________
consensus             CTCAAGAGGCAGGGAAGGACTTTGTACGGATTTGGTGGTTAGGAGCTTCATAAACTAGGG
 
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rJMFF031L16+          TTTATGCTTCTTTTCTGAAATCAGTGGATTATTTGTGCTTCTGCATTAGTTCTATTT   
rJMSF032H06+          TTTATGCTTCTTTTCTGAAATCAGTGGATTATTTGTGCTTCTGCATTAGTTCTATTTACT
                      ____________________________________________________________
consensus             TTTATGCTTCTTTTCTGAAATCAGTGGATTATTTGTGCTTCTGCATTAGTTCTATTTACT