Contig 007158:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031K17Sequence669012065 (3)ref|XP_004248109.1|3e-115PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 [Solanum lycopersicu689007158 (2)ref|XP_009798713.1|5e-47PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X2 [Nicotian
JMSF052I07Sequence690012065 (3)ref|XP_004248109.1|8e-122PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 [Solanum lycopersicu923007158 (2)ref|XP_009798713.1|3e-58PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X2 [Nicotian

Alignment

This contig is upended


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rJMSF052I07+                                GAATATGAGAGTTTGGCCTATGAGCATCATTTTTATAG
                      ____________________________________________________________
consensus                                   GAATATGAGAGTTTGGCCTATGAGCATCATTTTTATAG
 
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rJMSF052I07+          CCATGAACTGCATATTTGCATTTCTATTTTATTTAAGCCTTCCATATCTTATGTCTGATG
                      ____________________________________________________________
consensus             CCATGAACTGCATATTTGCATTTCTATTTTATTTAAGCCTTCCATATCTTATGTCTGATG
 
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rJMSF052I07+          TGTGTTTAATCAAAGTGTTTCCTTGACTCTATTAAAAACTAGAAATATTAGAGAGAATAG
                      ____________________________________________________________
consensus             TGTGTTTAATCAAAGTGTTTCCTTGACTCTATTAAAAACTAGAAATATTAGAGAGAATAG
 
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rJMSF052I07+          TTTGCTGGGGGAAATTGAGACCTGCTTCAAAGAATATGTATCAACCAATTATGATGTTAT
                      ____________________________________________________________
consensus             TTTGCTGGGGGAAATTGAGACCTGCTTCAAAGAATATGTATCAACCAATTATGATGTTAT
 
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rJMSF052I07+          GTATTTCTATCACATTTAAAATCCTTAGACACAAAGTATGTACTATATTGTTATTAATTG
                      ____________________________________________________________
consensus             GTATTTCTATCACATTTAAAATCCTTAGACACAAAGTATGTACTATATTGTTATTAATTG
 
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rJMSF052I07+          TTTATTAGCTTTTACATTGAAGCAAGGCTTAACCAATACATTGCAGAGTAATATTTCAAT
                      ____________________________________________________________
consensus             TTTATTAGCTTTTACATTGAAGCAAGGCTTAACCAATACATTGCAGAGTAATATTTCAAT
 
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rJMSF052I07+          GCATGAATATGCCACTTGAGCATACTTTCTTACTCTTTATTCTTTTTTGCTTGATTTTAT
                      ____________________________________________________________
consensus             GCATGAATATGCCACTTGAGCATACTTTCTTACTCTTTATTCTTTTTTGCTTGATTTTAT
 
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rJMSF052I07+          TTGGTTTTTTAATACATGTTTTATTTGGCAGTTTCTGGATCTAAAAGAAAGGCTAAGAGC
                      ____________________________________________________________
consensus             TTGGTTTTTTAATACATGTTTTATTTGGCAGTTTCTGGATCTAAAAGAAAGGCTAAGAGC
 
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rJMSF052I07+          TTCAAAGATGATGAGTACTTCATAAGCGCTGTACCAACAAATCAGCATTTTGAGGCTGGA
                      ____________________________________________________________
consensus             TTCAAAGATGATGAGTACTTCATAAGCGCTGTACCAACAAATCAGCATTTTGAGGCTGGA
 
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rJMSF052I07+          CTTTCTGTGAAAGCTAACCAAGGATTTGAATCCAATAGGTTGGATGCTGCTGTTCTAGAT
rJMSF031K17+                                         CCAATAGGTTGGATGCTGCTGTTCTAGAT
                      ____________________________________________________________
consensus             CTTTCTGTGAAAGCTAACCAAGGATTTGAATCCAATAGGTTGGATGCTGCTGTTCTAGAT
 
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rJMSF052I07+          TTAGTAGCTGATGATAAAGAAGGGCTGCATAGACAAAAAACTACGTATCACTGGGACAAG
rJMSF031K17+          TTAGTAGCTGATGATAAAGAAGGGCTGCATAGACAAAAAACTACGTATCACTGGGACAAG
                      ____________________________________________________________
consensus             TTAGTAGCTGATGATAAAGAAGGGCTGCATAGACAAAAAACTACGTATCACTGGGACAAG
 
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rJMSF052I07+          AGGAGCAAAAAGTACATCAAGCTGAATAATGGGGATCGTGTGACTGCTAGTGGGAAGATA
rJMSF031K17+          AGGAGCAAAAAGTACATCAAGCTGAATAATGGGGATCGTGTGACTGCTAGTGGGAAGATA
                      ____________________________________________________________
consensus             AGGAGCAAAAAGTACATCAAGCTGAATAATGGGGATCGTGTGACTGCTAGTGGGAAGATA
 
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rJMSF052I07+          AAGACAGAGGGCGGTGCAAAGGTGAAAGCTAATAAAACTGGGATATACAAAAAATGGAAA
rJMSF031K17+          AAGACAGAGGGCGGTGCAAAGGTGAAAGCTAATAAAACTGGGATATACAAAAAATGGAAA
                      ____________________________________________________________
consensus             AAGACAGAGGGCGGTGCAAAGGTGAAAGCTAATAAAACTGGGATATACAAAAAATGGAAA
 
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rJMSF052I07+          GAACAGTCACACAAGAAAGTGTCCCTCAAAGGAACCAACATGGATGATAGTATTGGAGAA
rJMSF031K17+          GAACAGTCACACAAGAAAGTGTCCCTCAAAGGAACCAACATGGATGATAGTATTGGAGAA
                      ____________________________________________________________
consensus             GAACAGTCACACAAGAAAGTGTCCCTCAAAGGAACCAACATGGATGATAGTATTGGAGAA
 
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rJMSF052I07+          TCAACAAGTTCAGCTGGTAAAGGTGGTTTGGGAGTTAAAGGTGGCAATATGAAATTCCAA
rJMSF031K17+          TCAACAAGTTCAGCTGGTAAAGGTGGTTTGGGAGTTAAAGGTGGCAATATGAAATTCCAA
                      ____________________________________________________________
consensus             TCAACAAGTTCAGCTGGTAAAGGTGGTTTGGGAGTTAAAGGTGGCAATATGAAATTCCAA
 
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rJMSF052I07+          CGTGGAAGGAAGAATACTAGATCAATACCCAATGCCCACG                    
rJMSF031K17+          CGTGGAAGGAAGAATACTAGATCAATACCCAATGCCCACGTACGTTCAGAAATTAAAGAC
                      ____________________________________________________________
consensus             CGTGGAAGGAAGAATACTAGATCAATACCCAATGCCCACGTACGTTCAGAAATTAAAGAC
 
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rJMSF031K17+          CACGAACAAATTCGAAAAGAGAGGGAGAAGAAGGCAAACAGAATAGCTCATTTGAAGAGT
                      ____________________________________________________________
consensus             CACGAACAAATTCGAAAAGAGAGGGAGAAGAAGGCAAACAGAATAGCTCATTTGAAGAGT
 
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rJMSF031K17+          AAGCCCAGCAAGGGAAAAAAATTCAAAAGAAGCAGCAACAAAGGGGGGAAGGGAAGGCGA
                      ____________________________________________________________
consensus             AAGCCCAGCAAGGGAAAAAAATTCAAAAGAAGCAGCAACAAAGGGGGGAAGGGAAGGCGA
 
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rJMSF031K17+          AGTAACTGATTTGATGTATAGCCTGAATATAGAGTAAGGCTTTAAATTTTGTTGATGTCT
                      ____________________________________________________________
consensus             AGTAACTGATTTGATGTATAGCCTGAATATAGAGTAAGGCTTTAAATTTTGTTGATGTCT
 
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rJMSF031K17+          GTGTTTTTCTTGTTAAGTGTGTGTGTGTAGGGGTTCCTTTATAACACATCTTATTGAAGC
                      ____________________________________________________________
consensus             GTGTTTTTCTTGTTAAGTGTGTGTGTGTAGGGGTTCCTTTATAACACATCTTATTGAAGC
 
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rJMSF031K17+          TTAAGAGTCCTTCAAGGGGGAGGGATGGGCGGCACTGCTTCGTTAAGCTGCCACTAAATG
                      ____________________________________________________________
consensus             TTAAGAGTCCTTCAAGGGGGAGGGATGGGCGGCACTGCTTCGTTAAGCTGCCACTAAATG